HEADER HYDROLASE 02-DEC-13 4NT9 TITLE CRYSTAL STRUCTURE OF AN L,D-CARBOXYPEPTIDASE DACB FROM STREPTOCOCCUS TITLE 2 PNEUMONIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: B, A, C; COMPND 4 FRAGMENT: UNP RESIDUES 27-238; COMPND 5 SYNONYM: L,D-CARBOXYPEPTIDASE DACB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP_0629; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS HYDROLASE, ZINC-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.YANG,J.ZHANG,Y.L.JIANG,C.Z.ZHOU,Y.CHEN REVDAT 2 20-MAR-24 4NT9 1 REMARK SEQADV LINK REVDAT 1 12-NOV-14 4NT9 0 JRNL AUTH Y.H.YANG,J.ZHANG,Y.L.JIANG,C.Z.ZHOU,Y.CHEN JRNL TITL CRYSTAL STRUCTURE OF AN L,D-CARBOXYPEPTIDASE DACB FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 58192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4816 - 4.7018 0.97 2786 144 0.1786 0.1977 REMARK 3 2 4.7018 - 3.7327 0.95 2677 138 0.1476 0.1739 REMARK 3 3 3.7327 - 3.2611 0.97 2713 149 0.1527 0.1806 REMARK 3 4 3.2611 - 2.9630 0.98 2739 153 0.1702 0.1948 REMARK 3 5 2.9630 - 2.7507 0.98 2682 176 0.1714 0.2161 REMARK 3 6 2.7507 - 2.5886 0.98 2728 137 0.1761 0.2105 REMARK 3 7 2.5886 - 2.4589 0.97 2717 155 0.1745 0.2187 REMARK 3 8 2.4589 - 2.3519 0.97 2709 127 0.1783 0.2030 REMARK 3 9 2.3519 - 2.2614 0.97 2706 156 0.1694 0.1971 REMARK 3 10 2.2614 - 2.1833 0.97 2682 136 0.1690 0.2625 REMARK 3 11 2.1833 - 2.1151 0.97 2690 128 0.1760 0.2207 REMARK 3 12 2.1151 - 2.0546 0.97 2674 150 0.1850 0.2240 REMARK 3 13 2.0546 - 2.0005 0.96 2670 148 0.1887 0.2336 REMARK 3 14 2.0005 - 1.9517 0.96 2660 141 0.1944 0.2468 REMARK 3 15 1.9517 - 1.9074 0.96 2665 139 0.2034 0.2382 REMARK 3 16 1.9074 - 1.8668 0.96 2694 129 0.2217 0.2339 REMARK 3 17 1.8668 - 1.8294 0.96 2652 143 0.2328 0.2807 REMARK 3 18 1.8294 - 1.7949 0.96 2650 145 0.2384 0.2699 REMARK 3 19 1.7949 - 1.7628 0.95 2657 136 0.2486 0.2492 REMARK 3 20 1.7628 - 1.7330 0.80 2177 123 0.2587 0.3221 REMARK 3 21 1.7330 - 1.7050 0.69 1915 96 0.2448 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4538 REMARK 3 ANGLE : 1.375 6119 REMARK 3 CHIRALITY : 0.091 609 REMARK 3 PLANARITY : 0.007 801 REMARK 3 DIHEDRAL : 14.498 1649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4NT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.705 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-CL, PH 8.5, 30% PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.04000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 THR B 31 REMARK 465 LYS B 32 REMARK 465 THR B 33 REMARK 465 GLU B 34 REMARK 465 GLN B 35 REMARK 465 THR B 36 REMARK 465 ALA B 37 REMARK 465 LYS B 38 REMARK 465 ALA B 39 REMARK 465 ASP B 40 REMARK 465 GLY B 41 REMARK 465 THR B 42 REMARK 465 VAL B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 LYS B 46 REMARK 465 SER B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 ALA B 50 REMARK 465 ALA B 51 REMARK 465 GLN B 52 REMARK 465 LYS B 53 REMARK 465 ASP B 238 REMARK 465 GLY A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 THR A 31 REMARK 465 LYS A 32 REMARK 465 THR A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 ALA A 37 REMARK 465 LYS A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 40 REMARK 465 GLY A 41 REMARK 465 THR A 42 REMARK 465 VAL A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 SER A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLN A 52 REMARK 465 LYS A 53 REMARK 465 ASP A 238 REMARK 465 GLY C 20 REMARK 465 HIS C 21 REMARK 465 HIS C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 HIS C 25 REMARK 465 HIS C 26 REMARK 465 GLU C 27 REMARK 465 ASP C 28 REMARK 465 GLY C 29 REMARK 465 GLU C 30 REMARK 465 THR C 31 REMARK 465 LYS C 32 REMARK 465 THR C 33 REMARK 465 GLU C 34 REMARK 465 GLN C 35 REMARK 465 THR C 36 REMARK 465 ALA C 37 REMARK 465 LYS C 38 REMARK 465 ALA C 39 REMARK 465 ASP C 40 REMARK 465 GLY C 41 REMARK 465 THR C 42 REMARK 465 VAL C 43 REMARK 465 GLY C 44 REMARK 465 SER C 45 REMARK 465 LYS C 46 REMARK 465 SER C 47 REMARK 465 GLN C 48 REMARK 465 GLY C 49 REMARK 465 ALA C 50 REMARK 465 ALA C 51 REMARK 465 GLN C 52 REMARK 465 LYS C 53 REMARK 465 ASP C 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 477 O HOH C 491 2.05 REMARK 500 OE1 GLU A 123 O HOH A 514 2.06 REMARK 500 O HOH B 481 O HOH B 485 2.12 REMARK 500 O HOH C 427 O HOH C 537 2.15 REMARK 500 OD1 ASP A 235 O HOH A 460 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 54 O HOH A 463 2546 2.11 REMARK 500 O HOH A 428 O HOH C 510 2456 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 160 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 145 -162.08 -105.33 REMARK 500 SER A 145 -169.06 -112.99 REMARK 500 SER C 145 -157.08 -110.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 ASP B 160 OD1 87.0 REMARK 620 3 GLU B 204 OE1 175.8 93.3 REMARK 620 4 HIS B 207 ND1 94.2 98.4 89.9 REMARK 620 5 HOH B 406 O 91.0 91.3 84.8 169.2 REMARK 620 6 HOH B 416 O 93.2 176.3 86.2 85.3 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 ASP A 160 OD1 87.3 REMARK 620 3 GLU A 204 OE1 171.8 93.7 REMARK 620 4 HIS A 207 ND1 99.7 98.8 88.1 REMARK 620 5 HOH A 413 O 88.1 90.4 83.8 168.1 REMARK 620 6 HOH A 434 O 93.1 172.5 84.9 88.5 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 153 NE2 REMARK 620 2 ASP C 160 OD1 90.0 REMARK 620 3 GLU C 204 OE1 171.6 92.4 REMARK 620 4 HIS C 207 ND1 93.9 98.0 93.8 REMARK 620 5 HOH C 413 O 86.9 90.8 84.9 171.2 REMARK 620 6 HOH C 430 O 90.8 178.3 86.6 83.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 303 DBREF 4NT9 B 27 238 UNP Q97RZ7 Q97RZ7_STRPN 27 238 DBREF 4NT9 A 27 238 UNP Q97RZ7 Q97RZ7_STRPN 27 238 DBREF 4NT9 C 27 238 UNP Q97RZ7 Q97RZ7_STRPN 27 238 SEQADV 4NT9 GLY B 20 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 21 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 22 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 23 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 24 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 25 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS B 26 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 GLY A 20 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 21 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 22 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 23 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 24 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 25 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS A 26 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 GLY C 20 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 21 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 22 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 23 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 24 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 25 UNP Q97RZ7 EXPRESSION TAG SEQADV 4NT9 HIS C 26 UNP Q97RZ7 EXPRESSION TAG SEQRES 1 B 219 GLY HIS HIS HIS HIS HIS HIS GLU ASP GLY GLU THR LYS SEQRES 2 B 219 THR GLU GLN THR ALA LYS ALA ASP GLY THR VAL GLY SER SEQRES 3 B 219 LYS SER GLN GLY ALA ALA GLN LYS LYS ALA GLU VAL VAL SEQRES 4 B 219 ASN LYS GLY ASP TYR TYR SER ILE GLN GLY LYS TYR ASP SEQRES 5 B 219 GLU ILE ILE VAL ALA ASN LYS HIS TYR PRO LEU SER LYS SEQRES 6 B 219 ASP TYR ASN PRO GLY GLU ASN PRO THR ALA LYS ALA GLU SEQRES 7 B 219 LEU VAL LYS LEU ILE LYS ALA MET GLN GLU ALA GLY PHE SEQRES 8 B 219 PRO ILE SER ASP HIS TYR SER GLY PHE ARG SER TYR GLU SEQRES 9 B 219 THR GLN THR LYS LEU TYR GLN ASP TYR VAL ASN GLN ASP SEQRES 10 B 219 GLY LYS ALA ALA ALA ASP ARG TYR SER ALA ARG PRO GLY SEQRES 11 B 219 TYR SER GLU HIS GLN THR GLY LEU ALA PHE ASP VAL ILE SEQRES 12 B 219 GLY THR ASP GLY ASP LEU VAL THR GLU GLU LYS ALA ALA SEQRES 13 B 219 GLN TRP LEU LEU ASP HIS ALA ALA ASP TYR GLY PHE VAL SEQRES 14 B 219 VAL ARG TYR LEU LYS GLY LYS GLU LYS GLU THR GLY TYR SEQRES 15 B 219 MET ALA GLU GLU TRP HIS LEU ARG TYR VAL GLY LYS GLU SEQRES 16 B 219 ALA LYS GLU ILE ALA ALA SER GLY LEU SER LEU GLU GLU SEQRES 17 B 219 TYR TYR GLY PHE GLU GLY GLY ASP TYR VAL ASP SEQRES 1 A 219 GLY HIS HIS HIS HIS HIS HIS GLU ASP GLY GLU THR LYS SEQRES 2 A 219 THR GLU GLN THR ALA LYS ALA ASP GLY THR VAL GLY SER SEQRES 3 A 219 LYS SER GLN GLY ALA ALA GLN LYS LYS ALA GLU VAL VAL SEQRES 4 A 219 ASN LYS GLY ASP TYR TYR SER ILE GLN GLY LYS TYR ASP SEQRES 5 A 219 GLU ILE ILE VAL ALA ASN LYS HIS TYR PRO LEU SER LYS SEQRES 6 A 219 ASP TYR ASN PRO GLY GLU ASN PRO THR ALA LYS ALA GLU SEQRES 7 A 219 LEU VAL LYS LEU ILE LYS ALA MET GLN GLU ALA GLY PHE SEQRES 8 A 219 PRO ILE SER ASP HIS TYR SER GLY PHE ARG SER TYR GLU SEQRES 9 A 219 THR GLN THR LYS LEU TYR GLN ASP TYR VAL ASN GLN ASP SEQRES 10 A 219 GLY LYS ALA ALA ALA ASP ARG TYR SER ALA ARG PRO GLY SEQRES 11 A 219 TYR SER GLU HIS GLN THR GLY LEU ALA PHE ASP VAL ILE SEQRES 12 A 219 GLY THR ASP GLY ASP LEU VAL THR GLU GLU LYS ALA ALA SEQRES 13 A 219 GLN TRP LEU LEU ASP HIS ALA ALA ASP TYR GLY PHE VAL SEQRES 14 A 219 VAL ARG TYR LEU LYS GLY LYS GLU LYS GLU THR GLY TYR SEQRES 15 A 219 MET ALA GLU GLU TRP HIS LEU ARG TYR VAL GLY LYS GLU SEQRES 16 A 219 ALA LYS GLU ILE ALA ALA SER GLY LEU SER LEU GLU GLU SEQRES 17 A 219 TYR TYR GLY PHE GLU GLY GLY ASP TYR VAL ASP SEQRES 1 C 219 GLY HIS HIS HIS HIS HIS HIS GLU ASP GLY GLU THR LYS SEQRES 2 C 219 THR GLU GLN THR ALA LYS ALA ASP GLY THR VAL GLY SER SEQRES 3 C 219 LYS SER GLN GLY ALA ALA GLN LYS LYS ALA GLU VAL VAL SEQRES 4 C 219 ASN LYS GLY ASP TYR TYR SER ILE GLN GLY LYS TYR ASP SEQRES 5 C 219 GLU ILE ILE VAL ALA ASN LYS HIS TYR PRO LEU SER LYS SEQRES 6 C 219 ASP TYR ASN PRO GLY GLU ASN PRO THR ALA LYS ALA GLU SEQRES 7 C 219 LEU VAL LYS LEU ILE LYS ALA MET GLN GLU ALA GLY PHE SEQRES 8 C 219 PRO ILE SER ASP HIS TYR SER GLY PHE ARG SER TYR GLU SEQRES 9 C 219 THR GLN THR LYS LEU TYR GLN ASP TYR VAL ASN GLN ASP SEQRES 10 C 219 GLY LYS ALA ALA ALA ASP ARG TYR SER ALA ARG PRO GLY SEQRES 11 C 219 TYR SER GLU HIS GLN THR GLY LEU ALA PHE ASP VAL ILE SEQRES 12 C 219 GLY THR ASP GLY ASP LEU VAL THR GLU GLU LYS ALA ALA SEQRES 13 C 219 GLN TRP LEU LEU ASP HIS ALA ALA ASP TYR GLY PHE VAL SEQRES 14 C 219 VAL ARG TYR LEU LYS GLY LYS GLU LYS GLU THR GLY TYR SEQRES 15 C 219 MET ALA GLU GLU TRP HIS LEU ARG TYR VAL GLY LYS GLU SEQRES 16 C 219 ALA LYS GLU ILE ALA ALA SER GLY LEU SER LEU GLU GLU SEQRES 17 C 219 TYR TYR GLY PHE GLU GLY GLY ASP TYR VAL ASP HET ZN B 301 1 HET ACT B 302 4 HET GOL B 303 6 HET ZN A 301 1 HET ACT A 302 4 HET GOL A 303 6 HET GOL A 304 6 HET ZN C 301 1 HET ACT C 302 4 HET GOL C 303 6 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 14 HOH *393(H2 O) HELIX 1 1 ASN B 91 ALA B 108 1 18 HELIX 2 2 SER B 121 GLY B 137 1 17 HELIX 3 3 GLY B 137 SER B 145 1 9 HELIX 4 4 SER B 151 GLY B 156 5 6 HELIX 5 5 GLU B 171 ALA B 182 1 12 HELIX 6 6 ALA B 183 TYR B 185 5 3 HELIX 7 7 LYS B 195 GLY B 200 1 6 HELIX 8 8 GLU B 214 GLY B 222 1 9 HELIX 9 9 SER B 224 GLY B 230 1 7 HELIX 10 10 ASN A 91 ALA A 108 1 18 HELIX 11 11 SER A 121 GLY A 137 1 17 HELIX 12 12 GLY A 137 SER A 145 1 9 HELIX 13 13 SER A 151 GLY A 156 5 6 HELIX 14 14 GLU A 171 ALA A 182 1 12 HELIX 15 15 ALA A 183 TYR A 185 5 3 HELIX 16 16 LYS A 195 GLY A 200 1 6 HELIX 17 17 GLU A 214 GLY A 222 1 9 HELIX 18 18 SER A 224 GLY A 230 1 7 HELIX 19 19 ASN C 91 ALA C 108 1 18 HELIX 20 20 SER C 121 GLY C 137 1 17 HELIX 21 21 GLY C 137 SER C 145 1 9 HELIX 22 22 SER C 151 GLY C 156 5 6 HELIX 23 23 GLU C 171 ALA C 182 1 12 HELIX 24 24 ALA C 183 TYR C 185 5 3 HELIX 25 25 LYS C 195 GLY C 200 1 6 HELIX 26 26 GLU C 214 GLY C 222 1 9 HELIX 27 27 SER C 224 GLY C 230 1 7 SHEET 1 A 3 VAL B 58 ASN B 59 0 SHEET 2 A 3 TYR B 64 GLN B 67 -1 O SER B 65 N VAL B 58 SHEET 3 A 3 GLU B 72 VAL B 75 -1 O ILE B 73 N ILE B 66 SHEET 1 B 4 ILE B 112 SER B 117 0 SHEET 2 B 4 ALA B 158 GLY B 163 -1 O ASP B 160 N SER B 117 SHEET 3 B 4 HIS B 207 TYR B 210 -1 O LEU B 208 N PHE B 159 SHEET 4 B 4 PHE B 187 VAL B 189 -1 N VAL B 188 O ARG B 209 SHEET 1 C 3 VAL A 58 ASN A 59 0 SHEET 2 C 3 TYR A 64 GLN A 67 -1 O SER A 65 N VAL A 58 SHEET 3 C 3 GLU A 72 VAL A 75 -1 O ILE A 73 N ILE A 66 SHEET 1 D 4 ILE A 112 SER A 117 0 SHEET 2 D 4 ALA A 158 GLY A 163 -1 O ASP A 160 N SER A 117 SHEET 3 D 4 HIS A 207 TYR A 210 -1 O LEU A 208 N PHE A 159 SHEET 4 D 4 PHE A 187 VAL A 189 -1 N VAL A 188 O ARG A 209 SHEET 1 E 3 VAL C 58 ASN C 59 0 SHEET 2 E 3 TYR C 64 GLN C 67 -1 O SER C 65 N VAL C 58 SHEET 3 E 3 GLU C 72 VAL C 75 -1 O ILE C 73 N ILE C 66 SHEET 1 F 4 ILE C 112 SER C 117 0 SHEET 2 F 4 ALA C 158 GLY C 163 -1 O ASP C 160 N SER C 117 SHEET 3 F 4 HIS C 207 TYR C 210 -1 O LEU C 208 N PHE C 159 SHEET 4 F 4 PHE C 187 VAL C 189 -1 N VAL C 188 O ARG C 209 LINK NE2 HIS B 153 ZN ZN B 301 1555 1555 2.12 LINK OD1 ASP B 160 ZN ZN B 301 1555 1555 2.12 LINK OE1 GLU B 204 ZN ZN B 301 1555 1555 2.21 LINK ND1 HIS B 207 ZN ZN B 301 1555 1555 2.03 LINK ZN ZN B 301 O HOH B 406 1555 1555 2.02 LINK ZN ZN B 301 O HOH B 416 1555 1555 2.13 LINK NE2 HIS A 153 ZN ZN A 301 1555 1555 2.10 LINK OD1 ASP A 160 ZN ZN A 301 1555 1555 2.06 LINK OE1 GLU A 204 ZN ZN A 301 1555 1555 2.35 LINK ND1 HIS A 207 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 O HOH A 413 1555 1555 2.15 LINK ZN ZN A 301 O HOH A 434 1555 1555 2.20 LINK NE2 HIS C 153 ZN ZN C 301 1555 1555 2.15 LINK OD1 ASP C 160 ZN ZN C 301 1555 1555 2.09 LINK OE1 GLU C 204 ZN ZN C 301 1555 1555 2.26 LINK ND1 HIS C 207 ZN ZN C 301 1555 1555 1.99 LINK ZN ZN C 301 O HOH C 413 1555 1555 2.12 LINK ZN ZN C 301 O HOH C 430 1555 1555 2.23 SITE 1 AC1 6 HIS B 153 ASP B 160 GLU B 204 HIS B 207 SITE 2 AC1 6 HOH B 406 HOH B 416 SITE 1 AC2 8 ARG B 120 GLN B 125 ALA B 146 SER B 151 SITE 2 AC2 8 HIS B 153 GLU B 204 GOL B 303 HOH B 416 SITE 1 AC3 7 TYR B 132 TYR B 144 SER B 145 GLU B 204 SITE 2 AC3 7 ACT B 302 HOH B 406 HOH B 465 SITE 1 AC4 6 HIS A 153 ASP A 160 GLU A 204 HIS A 207 SITE 2 AC4 6 HOH A 413 HOH A 434 SITE 1 AC5 8 ARG A 120 GLN A 125 ALA A 146 SER A 151 SITE 2 AC5 8 HIS A 153 HOH A 417 HOH A 434 HOH A 505 SITE 1 AC6 8 HIS A 115 TYR A 116 HOH A 527 PRO B 88 SITE 2 AC6 8 GLY B 89 GLU B 90 ASN B 91 HOH B 494 SITE 1 AC7 7 LYS A 78 HIS A 79 TYR A 236 VAL A 237 SITE 2 AC7 7 HOH A 492 TYR B 185 HOH B 523 SITE 1 AC8 6 HIS C 153 ASP C 160 GLU C 204 HIS C 207 SITE 2 AC8 6 HOH C 413 HOH C 430 SITE 1 AC9 9 ARG C 120 GLN C 125 SER C 145 ALA C 146 SITE 2 AC9 9 SER C 151 HIS C 153 GLU C 204 HOH C 430 SITE 3 AC9 9 HOH C 459 SITE 1 BC1 5 GLU C 107 TYR C 185 HOH C 434 HOH C 449 SITE 2 BC1 5 HOH C 524 CRYST1 55.110 68.080 80.350 90.00 108.41 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018146 0.000000 0.006040 0.00000 SCALE2 0.000000 0.014689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013117 0.00000