HEADER IMMUNE SYSTEM 03-DEC-13 4NUG TITLE CRYSTAL STRUCTURE OF HIV-1 BROADLY NEUTRALIZING ANTIBODY PGT151 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGT151 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PGT151 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS IMMUNOGLOBULIN, FAB FRAGMENT, IMMUNE SYSTEM, HIV ENVELOPE EXPDTA X-RAY DIFFRACTION AUTHOR C.BLATTNER,I.A.WILSON REVDAT 5 30-OCT-24 4NUG 1 REMARK REVDAT 4 20-SEP-23 4NUG 1 REMARK DBREF SHEET REVDAT 3 02-AUG-17 4NUG 1 SOURCE REMARK REVDAT 2 04-JUN-14 4NUG 1 JRNL REVDAT 1 14-MAY-14 4NUG 0 JRNL AUTH C.BLATTNER,J.H.LEE,K.SLIEPEN,R.DERKING,E.FALKOWSKA, JRNL AUTH 2 A.T.DE LA PENA,A.CUPO,J.P.JULIEN,M.VAN GILS,P.S.LEE,W.PENG, JRNL AUTH 3 J.C.PAULSON,P.POIGNARD,D.R.BURTON,J.P.MOORE,R.W.SANDERS, JRNL AUTH 4 I.A.WILSON,A.B.WARD JRNL TITL STRUCTURAL DELINEATION OF A QUATERNARY, CLEAVAGE-DEPENDENT JRNL TITL 2 EPITOPE AT THE GP41-GP120 INTERFACE ON INTACT HIV-1 ENV JRNL TITL 3 TRIMERS. JRNL REF IMMUNITY V. 40 669 2014 JRNL REFN ISSN 1074-7613 JRNL PMID 24768348 JRNL DOI 10.1016/J.IMMUNI.2014.04.008 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 39127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4939 - 4.4835 0.99 2777 146 0.1560 0.1972 REMARK 3 2 4.4835 - 3.5600 0.99 2716 144 0.1340 0.1586 REMARK 3 3 3.5600 - 3.1104 0.99 2714 142 0.1545 0.1932 REMARK 3 4 3.1104 - 2.8261 0.99 2701 142 0.1691 0.2062 REMARK 3 5 2.8261 - 2.6237 0.99 2680 142 0.1754 0.2108 REMARK 3 6 2.6237 - 2.4690 0.99 2692 141 0.1731 0.2673 REMARK 3 7 2.4690 - 2.3454 0.98 2659 140 0.1685 0.2425 REMARK 3 8 2.3454 - 2.2433 0.98 2654 140 0.1648 0.2327 REMARK 3 9 2.2433 - 2.1570 0.98 2667 140 0.1723 0.2395 REMARK 3 10 2.1570 - 2.0826 0.98 2664 140 0.1534 0.2307 REMARK 3 11 2.0826 - 2.0175 0.98 2638 139 0.1547 0.1933 REMARK 3 12 2.0175 - 1.9598 0.98 2648 139 0.1564 0.2002 REMARK 3 13 1.9598 - 1.9082 0.97 2622 139 0.1683 0.2193 REMARK 3 14 1.9082 - 1.8617 0.87 2338 123 0.1865 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3635 REMARK 3 ANGLE : 1.095 4923 REMARK 3 CHIRALITY : 0.075 542 REMARK 3 PLANARITY : 0.004 631 REMARK 3 DIHEDRAL : 12.816 1333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESSEQ 1:80) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7534 -33.7020 25.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1977 REMARK 3 T33: 0.1674 T12: -0.0213 REMARK 3 T13: -0.0228 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.6563 L22: 0.5008 REMARK 3 L33: 0.4513 L12: -0.3157 REMARK 3 L13: -0.0285 L23: 0.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.1879 S13: -0.2276 REMARK 3 S21: -0.0411 S22: -0.0351 S23: 0.0407 REMARK 3 S31: -0.0253 S32: 0.0379 S33: 0.0464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESSEQ 81:106) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7443 -27.7896 23.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.1757 REMARK 3 T33: 0.1220 T12: -0.0171 REMARK 3 T13: 0.0049 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4456 L22: 0.2211 REMARK 3 L33: 0.0884 L12: 0.2853 REMARK 3 L13: 0.0048 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.1725 S12: -0.1270 S13: -0.2237 REMARK 3 S21: 0.0257 S22: -0.1419 S23: -0.0472 REMARK 3 S31: -0.0705 S32: 0.0756 S33: 0.0168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESSEQ 107:166) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1389 -25.2143 18.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1587 REMARK 3 T33: 0.1360 T12: 0.0147 REMARK 3 T13: 0.0014 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.0090 L22: 2.5367 REMARK 3 L33: 0.5324 L12: 0.5661 REMARK 3 L13: 0.1813 L23: 0.3499 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.0927 S13: 0.1356 REMARK 3 S21: -0.0484 S22: 0.0424 S23: 0.1107 REMARK 3 S31: -0.0494 S32: 0.0509 S33: -0.0079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESSEQ 167:213) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5676 -25.0047 19.6178 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1770 REMARK 3 T33: 0.0997 T12: 0.0057 REMARK 3 T13: 0.0175 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.4080 L22: 4.0838 REMARK 3 L33: 1.1231 L12: 1.6133 REMARK 3 L13: 0.2168 L23: -0.2896 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.1160 S13: 0.0113 REMARK 3 S21: 0.1650 S22: -0.0686 S23: -0.1387 REMARK 3 S31: -0.0795 S32: 0.1724 S33: 0.0666 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESSEQ 1:99) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5029 -12.9802 13.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0945 REMARK 3 T33: 0.1078 T12: 0.0025 REMARK 3 T13: -0.0070 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.2501 L22: 0.3256 REMARK 3 L33: 0.3892 L12: 0.0157 REMARK 3 L13: -0.0993 L23: -0.2705 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0364 S13: 0.0120 REMARK 3 S21: -0.0829 S22: 0.0320 S23: 0.0442 REMARK 3 S31: -0.0459 S32: -0.0761 S33: 0.0063 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESSEQ 100:119) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1486 -15.4852 18.1375 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1329 REMARK 3 T33: 0.1700 T12: -0.0287 REMARK 3 T13: 0.0366 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0553 L22: 0.2628 REMARK 3 L33: 0.1270 L12: -0.0631 REMARK 3 L13: 0.0638 L23: -0.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: -0.0426 S13: 0.1500 REMARK 3 S21: 0.0473 S22: 0.0401 S23: 0.1355 REMARK 3 S31: 0.0152 S32: -0.0570 S33: 0.0132 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESSEQ 120:213) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5452 -23.7353 4.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.1133 REMARK 3 T33: 0.1190 T12: 0.0204 REMARK 3 T13: -0.0121 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.2871 L22: 0.2617 REMARK 3 L33: 0.0315 L12: 0.1380 REMARK 3 L13: -0.0951 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.0375 S13: -0.0341 REMARK 3 S21: -0.0508 S22: -0.0480 S23: 0.0006 REMARK 3 S31: -0.0126 S32: 0.0214 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESSEQ 214:228) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8978 -18.1066 -2.3124 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.2408 REMARK 3 T33: 0.1519 T12: 0.0536 REMARK 3 T13: 0.0200 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.0228 L22: 0.2236 REMARK 3 L33: 0.0166 L12: 0.0712 REMARK 3 L13: 0.0199 L23: 0.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.0102 S13: -0.0494 REMARK 3 S21: -0.3174 S22: -0.0116 S23: -0.1690 REMARK 3 S31: -0.0826 S32: 0.1724 S33: -0.0057 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 33.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 74.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FX7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 3350, 0.1M PHOSPHATE-CITRATE, REMARK 280 PH 4.2, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.32250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.48850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.32250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.48850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 669 O HOH H 676 2.06 REMARK 500 O HOH H 624 O HOH H 681 2.10 REMARK 500 NH2 ARG L 61 OD2 ASP L 82 2.11 REMARK 500 O HOH H 436 O HOH H 630 2.12 REMARK 500 OG SER L 32 OG SER L 91 2.14 REMARK 500 OD2 ASP H 100E O HOH H 647 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -57.47 74.22 REMARK 500 ASN L 152 -1.34 76.35 REMARK 500 ASP H 26 33.60 73.40 REMARK 500 ASP H 101 -62.93 -103.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G L 301 REMARK 610 P6G H 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G H 301 DBREF 4NUG L 1 106 PDB 4NUG 4NUG 1 106 DBREF 4NUG L 107 214 UNP Q8TCD0 Q8TCD0_HUMAN 132 239 DBREF 4NUG H 1 100P PDB 4NUG 4NUG 1 100 DBREF 4NUG H 100Q 232 UNP S6BAM6 S6BAM6_HUMAN 130 249 SEQRES 1 L 219 ASP ILE VAL MET THR GLN THR PRO LEU SER LEU SER VAL SEQRES 2 L 219 THR PRO GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 219 GLU SER LEU ARG GLN SER ASN GLY LYS THR SER LEU TYR SEQRES 4 L 219 TRP TYR ARG GLN LYS PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 219 VAL PHE GLU VAL SER ASN ARG PHE SER GLY VAL SER ASP SEQRES 6 L 219 ARG PHE VAL GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY PHE TYR SEQRES 8 L 219 TYR CYS MET GLN SER LYS ASP PHE PRO LEU THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS VAL ASP LEU LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 240 ARG VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 240 PRO GLY LYS SER VAL ARG LEU SER CYS VAL VAL SER ASP SEQRES 3 H 240 PHE PRO PHE SER LYS TYR PRO MET TYR TRP VAL ARG GLN SEQRES 4 H 240 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ALA ILE SER SEQRES 5 H 240 GLY ASP ALA TRP HIS VAL VAL TYR SER ASN SER VAL GLN SEQRES 6 H 240 GLY ARG PHE LEU VAL SER ARG ASP ASN VAL LYS ASN THR SEQRES 7 H 240 LEU TYR LEU GLU MET ASN SER LEU LYS ILE GLU ASP THR SEQRES 8 H 240 ALA VAL TYR ARG CYS ALA ARG MET PHE GLN GLU SER GLY SEQRES 9 H 240 PRO PRO ARG LEU ASP ARG TRP SER GLY ARG ASN TYR TYR SEQRES 10 H 240 TYR TYR SER GLY MET ASP VAL TRP GLY GLN GLY THR THR SEQRES 11 H 240 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 12 H 240 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 13 H 240 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 14 H 240 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 15 H 240 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 16 H 240 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 17 H 240 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 18 H 240 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 19 H 240 PRO LYS SER CYS ASP LYS HET P6G L 301 14 HET P6G H 301 18 HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 P6G 2(C12 H26 O7) FORMUL 5 HOH *485(H2 O) HELIX 1 1 GLU L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 HIS L 189 1 7 HELIX 4 4 PRO H 28 TYR H 32 5 5 HELIX 5 5 LYS H 83 THR H 87 5 5 HELIX 6 6 SER H 127 LYS H 129 5 3 HELIX 7 7 SER H 163 ALA H 165 5 3 HELIX 8 8 SER H 196 LEU H 198 5 3 HELIX 9 9 LYS H 213 ASN H 216 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N VAL L 63 O ARG L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 GLN L 45 PHE L 49 -1 O GLN L 45 N ARG L 37 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N PHE L 49 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O VAL H 23 N VAL H 5 SHEET 3 F 4 THR H 77 MET H 82 -1 O MET H 82 N VAL H 18 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 MET H 95 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 MET H 34 GLN H 39 -1 N VAL H 37 O ARG H 91 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 VAL H 57 TYR H 59 -1 O VAL H 58 N ALA H 50 SHEET 1 H 3 GLY H 10 VAL H 12 0 SHEET 2 H 3 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 H 3 ALA H 88 MET H 95 -1 N TYR H 90 O THR H 107 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 I 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 J 4 THR H 133 SER H 134 0 SHEET 2 J 4 THR H 137 TYR H 147 -1 O THR H 137 N SER H 134 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 K 3 THR H 153 TRP H 157 0 SHEET 2 K 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 K 3 THR H 217 ARG H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.03 CISPEP 1 THR L 7 PRO L 8 0 -3.99 CISPEP 2 PHE L 94 PRO L 95 0 -0.69 CISPEP 3 TYR L 140 PRO L 141 0 2.24 CISPEP 4 PHE H 148 PRO H 149 0 -5.96 CISPEP 5 GLU H 150 PRO H 151 0 0.95 SITE 1 AC1 8 TRP H 55 THR H 133 SER H 134 PRO L 113 SITE 2 AC1 8 SER L 114 VAL L 115 VAL L 205 LYS L 207 SITE 1 AC2 10 GLY H 8 GLY H 9 GLY H 10 VAL H 11 SITE 2 AC2 10 VAL H 74 LYS H 75 SER H 196 SER H 197 SITE 3 AC2 10 THR H 200 HOH H 536 CRYST1 118.645 66.977 84.552 90.00 133.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008429 0.000000 0.008113 0.00000 SCALE2 0.000000 0.014930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016416 0.00000