HEADER RNA BINDING PROTEIN 04-DEC-13 4NUT TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN SNU13P AND THE PEP DOMAIN OF TITLE 2 RSA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 13 KDA RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RIBOSOME ASSEMBLY 1 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PEP DOMAIN, UNP RESIDUES 238-290; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SNU13, YEL026W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 559292; SOURCE 13 STRAIN: ATCC 204508 / S288C; SOURCE 14 GENE: RSA1, YPL193W; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SNORNP ASSEMBLY, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHARRON,M.E.CHAGOT,X.MANIVAL,C.BRANLANT,B.CHARPENTIER REVDAT 2 20-MAR-24 4NUT 1 REMARK SEQADV REVDAT 1 10-DEC-14 4NUT 0 JRNL AUTH J.BIZARRO,C.CHARRON,S.BOULON,B.WESTMAN,B.PRADET-BALADE, JRNL AUTH 2 F.VANDERMOERE,M.E.CHAGOT,M.HALLAIS,Y.AHMAD,H.LEONHARDT, JRNL AUTH 3 A.LAMOND,X.MANIVAL,C.BRANLANT,B.CHARPENTIER,C.VERHEGGEN, JRNL AUTH 4 E.BERTRAND JRNL TITL PROTEOMIC AND 3D STRUCTURE ANALYSES HIGHLIGHT THE C/D BOX JRNL TITL 2 SNORNP ASSEMBLY MECHANISM AND ITS CONTROL JRNL REF J.CELL BIOL. V. 207 463 2014 JRNL REFN ISSN 0021-9525 JRNL PMID 25404746 JRNL DOI 10.1083/JCB.201404160 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1190 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1215 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1609 ; 2.206 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2799 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 5.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;40.119 ;25.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 229 ;14.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1306 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 594 ; 1.970 ; 1.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 593 ; 1.967 ; 1.651 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 739 ; 2.751 ; 2.467 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 740 ; 2.751 ; 2.471 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 595 ; 3.332 ; 2.144 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 591 ; 3.331 ; 2.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 864 ; 5.195 ; 3.026 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1444 ; 7.202 ;14.986 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1396 ; 7.185 ;14.454 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5441 -9.8966 -14.6792 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0228 REMARK 3 T33: 0.0458 T12: -0.0108 REMARK 3 T13: -0.0208 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4929 L22: 0.6824 REMARK 3 L33: 1.3597 L12: 0.3030 REMARK 3 L13: 0.5142 L23: 0.7111 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.0175 S13: -0.0160 REMARK 3 S21: -0.0708 S22: -0.0509 S23: 0.0209 REMARK 3 S31: -0.0913 S32: 0.0175 S33: 0.1001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 239 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3013 -14.0984 -9.5539 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.1154 REMARK 3 T33: 0.1159 T12: -0.0346 REMARK 3 T13: -0.0246 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.5708 L22: 0.6939 REMARK 3 L33: 0.1272 L12: 0.6423 REMARK 3 L13: 0.0646 L23: 0.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: 0.0751 S13: -0.3729 REMARK 3 S21: -0.0498 S22: 0.1054 S23: -0.1360 REMARK 3 S31: -0.0318 S32: 0.0837 S33: -0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : A CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM SULFATE, 70MM SODIUM REMARK 280 CITRATE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.27450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.86600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.86600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.41175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.86600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.86600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.13725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.86600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.86600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.41175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.86600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.86600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.13725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.27450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 367 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 126 REMARK 465 GLY B 234 REMARK 465 PRO B 235 REMARK 465 HIS B 236 REMARK 465 MET B 237 REMARK 465 THR B 238 REMARK 465 GLN B 266 REMARK 465 GLU B 267 REMARK 465 MET B 268 REMARK 465 GLY B 269 REMARK 465 ILE B 270 REMARK 465 LYS B 271 REMARK 465 GLU B 272 REMARK 465 ASP B 273 REMARK 465 GLU B 274 REMARK 465 LEU B 275 REMARK 465 LYS B 276 REMARK 465 SER B 277 REMARK 465 GLN B 278 REMARK 465 PRO B 279 REMARK 465 SER B 280 REMARK 465 ILE B 281 REMARK 465 PHE B 282 REMARK 465 LYS B 283 REMARK 465 GLU B 284 REMARK 465 SER B 285 REMARK 465 ARG B 286 REMARK 465 LYS B 287 REMARK 465 GLU B 288 REMARK 465 LYS B 289 REMARK 465 GLN B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 73 O HOH A 364 2.03 REMARK 500 O HOH A 348 O HOH A 375 2.03 REMARK 500 O ALA A 12 O HOH A 350 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 241 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 DBREF 4NUT A 1 126 UNP P39990 SNU13_YEAST 1 126 DBREF 4NUT B 238 290 UNP Q08932 RSA1_YEAST 238 290 SEQADV 4NUT GLY A -2 UNP P39990 EXPRESSION TAG SEQADV 4NUT PRO A -1 UNP P39990 EXPRESSION TAG SEQADV 4NUT HIS A 0 UNP P39990 EXPRESSION TAG SEQADV 4NUT GLY B 234 UNP Q08932 EXPRESSION TAG SEQADV 4NUT PRO B 235 UNP Q08932 EXPRESSION TAG SEQADV 4NUT HIS B 236 UNP Q08932 EXPRESSION TAG SEQADV 4NUT MET B 237 UNP Q08932 EXPRESSION TAG SEQRES 1 A 129 GLY PRO HIS MET SER ALA PRO ASN PRO LYS ALA PHE PRO SEQRES 2 A 129 LEU ALA ASP ALA ALA LEU THR GLN GLN ILE LEU ASP VAL SEQRES 3 A 129 VAL GLN GLN ALA ALA ASN LEU ARG GLN LEU LYS LYS GLY SEQRES 4 A 129 ALA ASN GLU ALA THR LYS THR LEU ASN ARG GLY ILE SER SEQRES 5 A 129 GLU PHE ILE ILE MET ALA ALA ASP CYS GLU PRO ILE GLU SEQRES 6 A 129 ILE LEU LEU HIS LEU PRO LEU LEU CYS GLU ASP LYS ASN SEQRES 7 A 129 VAL PRO TYR VAL PHE VAL PRO SER ARG VAL ALA LEU GLY SEQRES 8 A 129 ARG ALA CYS GLY VAL SER ARG PRO VAL ILE ALA ALA SER SEQRES 9 A 129 ILE THR THR ASN ASP ALA SER ALA ILE LYS THR GLN ILE SEQRES 10 A 129 TYR ALA VAL LYS ASP LYS ILE GLU THR LEU LEU ILE SEQRES 1 B 57 GLY PRO HIS MET THR ASP GLU ASP VAL LYS LYS TRP ARG SEQRES 2 B 57 GLU GLU ARG LYS LYS MET TRP LEU LEU LYS ILE SER ASN SEQRES 3 B 57 ASN LYS GLN LYS HIS MET GLN GLU MET GLY ILE LYS GLU SEQRES 4 B 57 ASP GLU LEU LYS SER GLN PRO SER ILE PHE LYS GLU SER SEQRES 5 B 57 ARG LYS GLU LYS GLN HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *95(H2 O) HELIX 1 1 ASP A 13 LEU A 30 1 18 HELIX 2 2 GLY A 36 GLY A 47 1 12 HELIX 3 3 PRO A 60 LEU A 64 5 5 HELIX 4 4 LEU A 65 ASN A 75 1 11 HELIX 5 5 SER A 83 CYS A 91 1 9 HELIX 6 6 ALA A 109 LEU A 125 1 17 HELIX 7 7 GLU B 240 ILE B 257 1 18 HELIX 8 8 ASN B 260 MET B 265 1 6 SHEET 1 A 4 LEU A 33 LYS A 35 0 SHEET 2 A 4 ALA A 99 THR A 103 -1 O SER A 101 N LYS A 34 SHEET 3 A 4 SER A 49 ALA A 55 -1 N GLU A 50 O ILE A 102 SHEET 4 A 4 TYR A 78 VAL A 81 1 O VAL A 81 N MET A 54 CISPEP 1 PHE A 9 PRO A 10 0 -7.56 CISPEP 2 GLU A 59 PRO A 60 0 -5.08 SITE 1 AC1 10 GLY A 36 ALA A 37 ASN A 38 GLU A 39 SITE 2 AC1 10 HOH A 305 HOH A 321 HOH A 327 HOH A 351 SITE 3 AC1 10 HOH A 355 HOH A 384 CRYST1 59.732 59.732 92.549 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010805 0.00000