HEADER LYASE 04-DEC-13 4NUW TITLE CRYSTAL STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM TITLE 2 METHANOBACTERIUM THERMOAUTOTROPHICUM COMPLEXED WITH URIDINE 5'- TITLE 3 MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: PYRF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE, URIDINE 5'- KEYWDS 2 MONOPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,K.K.CHAN,J.A.GERLT,S.C.ALMO REVDAT 2 20-SEP-23 4NUW 1 REMARK SEQADV REVDAT 1 18-DEC-13 4NUW 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,K.K.CHAN,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE JRNL TITL 2 DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM JRNL TITL 3 COMPLEXED WITH URIDINE 5'-MONOPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0810 - 3.6406 0.99 4647 146 0.1641 0.1664 REMARK 3 2 3.6406 - 2.8899 1.00 4609 160 0.1739 0.1916 REMARK 3 3 2.8899 - 2.5246 1.00 4589 127 0.1779 0.2004 REMARK 3 4 2.5246 - 2.2938 1.00 4546 142 0.1754 0.2002 REMARK 3 5 2.2938 - 2.1294 1.00 4550 171 0.1725 0.1977 REMARK 3 6 2.1294 - 2.0039 1.00 4570 156 0.1783 0.2067 REMARK 3 7 2.0039 - 1.9035 1.00 4542 149 0.1814 0.2173 REMARK 3 8 1.9035 - 1.8207 1.00 4555 147 0.1885 0.2133 REMARK 3 9 1.8207 - 1.7506 1.00 4559 119 0.1921 0.2354 REMARK 3 10 1.7506 - 1.6902 1.00 4565 138 0.1875 0.2344 REMARK 3 11 1.6902 - 1.6373 1.00 4542 145 0.1817 0.2370 REMARK 3 12 1.6373 - 1.5905 0.99 4435 145 0.1744 0.1925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3483 REMARK 3 ANGLE : 1.054 4707 REMARK 3 CHIRALITY : 0.074 533 REMARK 3 PLANARITY : 0.006 620 REMARK 3 DIHEDRAL : 11.958 1305 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2953 5.1989 72.0843 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.1179 REMARK 3 T33: 0.0934 T12: 0.0176 REMARK 3 T13: 0.0159 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.3751 L22: 4.8487 REMARK 3 L33: 4.2470 L12: 0.1780 REMARK 3 L13: 1.2991 L23: -3.3694 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.1601 S13: 0.0651 REMARK 3 S21: 0.1398 S22: -0.0358 S23: -0.1957 REMARK 3 S31: -0.1390 S32: 0.1325 S33: 0.0833 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7913 5.8124 76.9041 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1150 REMARK 3 T33: 0.0812 T12: -0.0157 REMARK 3 T13: -0.0051 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 3.4956 L22: 2.4223 REMARK 3 L33: 1.1983 L12: 0.3836 REMARK 3 L13: 0.3743 L23: 0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.1559 S13: 0.0102 REMARK 3 S21: 0.1139 S22: -0.0467 S23: -0.2333 REMARK 3 S31: -0.0813 S32: 0.1980 S33: 0.0184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7315 9.2752 78.6295 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.0812 REMARK 3 T33: 0.1012 T12: 0.0048 REMARK 3 T13: 0.0220 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 4.5446 L22: 2.5943 REMARK 3 L33: 4.6209 L12: 0.3970 REMARK 3 L13: 3.6471 L23: 1.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: -0.4406 S13: 0.3262 REMARK 3 S21: 0.1546 S22: -0.0361 S23: 0.2945 REMARK 3 S31: -0.2004 S32: -0.1184 S33: 0.1275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5805 8.3440 67.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.0563 REMARK 3 T33: 0.0823 T12: -0.0057 REMARK 3 T13: 0.0005 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.8769 L22: 1.9856 REMARK 3 L33: 1.5976 L12: 0.6962 REMARK 3 L13: 0.4122 L23: 0.5783 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.0604 S13: 0.1805 REMARK 3 S21: 0.0173 S22: 0.0020 S23: 0.1405 REMARK 3 S31: -0.1348 S32: 0.0261 S33: 0.0287 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1399 7.1025 57.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1219 REMARK 3 T33: 0.0825 T12: -0.0186 REMARK 3 T13: 0.0100 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.1282 L22: 1.2615 REMARK 3 L33: 0.8318 L12: -0.5190 REMARK 3 L13: 0.4016 L23: -0.4254 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: 0.2997 S13: 0.1049 REMARK 3 S21: -0.1060 S22: 0.0042 S23: -0.0821 REMARK 3 S31: -0.0350 S32: 0.1256 S33: 0.0756 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8103 -4.9832 89.1862 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1839 REMARK 3 T33: 0.0783 T12: 0.0013 REMARK 3 T13: -0.0059 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.2723 L22: 1.6428 REMARK 3 L33: 2.3844 L12: 0.6917 REMARK 3 L13: -0.2001 L23: -0.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.4956 S13: -0.0353 REMARK 3 S21: 0.2757 S22: -0.1091 S23: -0.0329 REMARK 3 S31: -0.0281 S32: 0.0402 S33: -0.0265 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8307 -7.6051 91.9718 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1830 REMARK 3 T33: 0.1072 T12: -0.0031 REMARK 3 T13: -0.0467 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 7.1152 L22: 6.9751 REMARK 3 L33: 6.3370 L12: 3.7593 REMARK 3 L13: -1.2745 L23: -4.7700 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.6927 S13: 0.0667 REMARK 3 S21: 0.4398 S22: -0.1194 S23: -0.2288 REMARK 3 S31: 0.1789 S32: 0.4009 S33: 0.0355 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4905 -8.6690 74.6812 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0501 REMARK 3 T33: 0.0977 T12: 0.0061 REMARK 3 T13: -0.0101 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.8208 L22: 1.8112 REMARK 3 L33: 5.1609 L12: 0.1853 REMARK 3 L13: -0.4636 L23: -1.2781 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.1041 S13: -0.0911 REMARK 3 S21: -0.0242 S22: -0.0286 S23: -0.1475 REMARK 3 S31: 0.0752 S32: 0.1186 S33: 0.0645 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9778 -9.8410 69.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0570 REMARK 3 T33: 0.1298 T12: -0.0086 REMARK 3 T13: 0.0162 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.3477 L22: 1.3490 REMARK 3 L33: 1.9941 L12: 0.3659 REMARK 3 L13: 0.1987 L23: -0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: -0.0857 S13: -0.2696 REMARK 3 S21: -0.0224 S22: 0.0175 S23: -0.1404 REMARK 3 S31: 0.2196 S32: 0.0777 S33: -0.0236 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5434 -10.3783 65.4836 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0800 REMARK 3 T33: 0.0663 T12: -0.0170 REMARK 3 T13: -0.0169 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.7575 L22: 2.3198 REMARK 3 L33: 2.1022 L12: -0.8347 REMARK 3 L13: -1.4604 L23: 0.7224 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.1588 S13: -0.0738 REMARK 3 S21: -0.0086 S22: 0.0245 S23: 0.0289 REMARK 3 S31: 0.0984 S32: -0.1180 S33: -0.0169 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3744 -8.9993 75.4342 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.0809 REMARK 3 T33: 0.0412 T12: -0.0216 REMARK 3 T13: -0.0013 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.1767 L22: 4.3826 REMARK 3 L33: 2.5047 L12: -1.1232 REMARK 3 L13: -0.4148 L23: 0.5353 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0419 S13: -0.0440 REMARK 3 S21: 0.0243 S22: 0.0136 S23: 0.1809 REMARK 3 S31: 0.1478 S32: -0.1810 S33: 0.0272 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4682 -4.1184 82.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.1002 REMARK 3 T33: 0.0895 T12: 0.0131 REMARK 3 T13: 0.0437 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.7459 L22: 2.2697 REMARK 3 L33: 2.4028 L12: 0.4719 REMARK 3 L13: 0.5707 L23: 0.3258 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.1778 S13: 0.1159 REMARK 3 S21: 0.1709 S22: 0.0226 S23: 0.1692 REMARK 3 S31: -0.0043 S32: -0.1773 S33: 0.0003 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 211 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8044 -7.5909 89.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.3283 REMARK 3 T33: 0.2043 T12: -0.0337 REMARK 3 T13: 0.0964 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.5513 L22: 5.3701 REMARK 3 L33: 7.7079 L12: 0.0968 REMARK 3 L13: 2.2823 L23: 4.8997 REMARK 3 S TENSOR REMARK 3 S11: 0.2900 S12: -0.6131 S13: -0.0158 REMARK 3 S21: 0.5199 S22: -0.4483 S23: 0.7514 REMARK 3 S31: 0.4467 S32: -0.6435 S33: 0.1094 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.591 REMARK 200 RESOLUTION RANGE LOW (A) : 40.068 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3G18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1M SODIUM CITRATE, REMARK 280 0.2M AMMONIUM ACETATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.11950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 ASN A 227 REMARK 465 PRO A 228 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 ASN B 227 REMARK 465 PRO B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 17.03 58.73 REMARK 500 ALA A 74 42.85 -149.63 REMARK 500 PHE A 134 -39.29 -132.22 REMARK 500 ASN B 13 17.17 55.47 REMARK 500 ALA B 74 46.63 -150.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G18 RELATED DB: PDB REMARK 900 THE SAME PROTEIN UNCOMPLEXED DBREF 4NUW A 1 228 UNP O26232 PYRF_METTH 1 228 DBREF 4NUW B 1 228 UNP O26232 PYRF_METTH 1 228 SEQADV 4NUW PRO A 101 UNP O26232 ARG 101 CONFLICT SEQADV 4NUW PRO B 101 UNP O26232 ARG 101 CONFLICT SEQRES 1 A 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 A 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 A 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 A 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 A 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 A 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 A 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 A 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 A 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 A 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER HIS PRO GLY SEQRES 11 A 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 A 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 A 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 A 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 A 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 A 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 A 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE ILE GLU SER SEQRES 18 A 228 ILE LYS ASP LEU LEU ASN PRO SEQRES 1 B 228 MET ARG SER ARG ARG VAL ASP VAL MET ASP VAL MET ASN SEQRES 2 B 228 ARG LEU ILE LEU ALA MET ASP LEU MET ASN ARG ASP ASP SEQRES 3 B 228 ALA LEU ARG VAL THR GLY GLU VAL ARG GLU TYR ILE ASP SEQRES 4 B 228 THR VAL LYS ILE GLY TYR PRO LEU VAL LEU SER GLU GLY SEQRES 5 B 228 MET ASP ILE ILE ALA GLU PHE ARG LYS ARG PHE GLY CYS SEQRES 6 B 228 ARG ILE ILE ALA ASP PHE LYS VAL ALA ASP ILE PRO GLU SEQRES 7 B 228 THR ASN GLU LYS ILE CYS ARG ALA THR PHE LYS ALA GLY SEQRES 8 B 228 ALA ASP ALA ILE ILE VAL HIS GLY PHE PRO GLY ALA ASP SEQRES 9 B 228 SER VAL ARG ALA CYS LEU ASN VAL ALA GLU GLU MET GLY SEQRES 10 B 228 ARG GLU VAL PHE LEU LEU THR GLU MET SER HIS PRO GLY SEQRES 11 B 228 ALA GLU MET PHE ILE GLN GLY ALA ALA ASP GLU ILE ALA SEQRES 12 B 228 ARG MET GLY VAL ASP LEU GLY VAL LYS ASN TYR VAL GLY SEQRES 13 B 228 PRO SER THR ARG PRO GLU ARG LEU SER ARG LEU ARG GLU SEQRES 14 B 228 ILE ILE GLY GLN ASP SER PHE LEU ILE SER PRO GLY VAL SEQRES 15 B 228 GLY ALA GLN GLY GLY ASP PRO GLY GLU THR LEU ARG PHE SEQRES 16 B 228 ALA ASP ALA ILE ILE VAL GLY ARG SER ILE TYR LEU ALA SEQRES 17 B 228 ASP ASN PRO ALA ALA ALA ALA ALA GLY ILE ILE GLU SER SEQRES 18 B 228 ILE LYS ASP LEU LEU ASN PRO HET U5P A 301 21 HET GOL A 302 12 HET EDO A 303 4 HET EDO A 304 4 HET U5P B 301 21 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 U5P 2(C9 H13 N2 O9 P) FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *346(H2 O) HELIX 1 1 VAL A 11 ASN A 13 5 3 HELIX 2 2 ASN A 23 ARG A 35 1 13 HELIX 3 3 TYR A 45 GLY A 52 1 8 HELIX 4 4 MET A 53 PHE A 63 1 11 HELIX 5 5 ILE A 76 ALA A 90 1 15 HELIX 6 6 GLY A 102 GLY A 117 1 16 HELIX 7 7 HIS A 128 MET A 133 5 6 HELIX 8 8 PHE A 134 GLY A 150 1 17 HELIX 9 9 ARG A 160 GLY A 172 1 13 HELIX 10 10 ASP A 188 LEU A 193 1 6 HELIX 11 11 GLY A 202 LEU A 207 1 6 HELIX 12 12 ASN A 210 ILE A 222 1 13 HELIX 13 13 LYS A 223 LEU A 226 5 4 HELIX 14 14 VAL B 11 ASN B 13 5 3 HELIX 15 15 ASN B 23 VAL B 34 1 12 HELIX 16 16 TYR B 45 GLY B 52 1 8 HELIX 17 17 ASP B 54 GLY B 64 1 11 HELIX 18 18 ILE B 76 ALA B 90 1 15 HELIX 19 19 GLY B 102 GLY B 117 1 16 HELIX 20 20 HIS B 128 MET B 133 5 6 HELIX 21 21 PHE B 134 GLY B 150 1 17 HELIX 22 22 ARG B 160 GLY B 172 1 13 HELIX 23 23 ASP B 188 LEU B 193 1 6 HELIX 24 24 GLY B 202 LEU B 207 1 6 HELIX 25 25 ASN B 210 ILE B 222 1 13 HELIX 26 26 LYS B 223 LEU B 226 5 4 SHEET 1 A 9 LEU A 15 MET A 19 0 SHEET 2 A 9 THR A 40 GLY A 44 1 O LYS A 42 N LEU A 17 SHEET 3 A 9 ARG A 66 VAL A 73 1 O ARG A 66 N VAL A 41 SHEET 4 A 9 ALA A 94 HIS A 98 1 O ALA A 94 N ALA A 69 SHEET 5 A 9 GLU A 119 LEU A 123 1 O LEU A 123 N VAL A 97 SHEET 6 A 9 ASN A 153 VAL A 155 1 O ASN A 153 N LEU A 122 SHEET 7 A 9 PHE A 176 SER A 179 1 O ILE A 178 N TYR A 154 SHEET 8 A 9 ALA A 198 VAL A 201 1 O ILE A 200 N SER A 179 SHEET 9 A 9 LEU A 15 MET A 19 1 N ILE A 16 O ILE A 199 SHEET 1 B 9 LEU B 15 MET B 19 0 SHEET 2 B 9 THR B 40 GLY B 44 1 O LYS B 42 N LEU B 17 SHEET 3 B 9 ARG B 66 VAL B 73 1 O ARG B 66 N VAL B 41 SHEET 4 B 9 ALA B 94 HIS B 98 1 O ALA B 94 N ALA B 69 SHEET 5 B 9 GLU B 119 LEU B 123 1 O LEU B 123 N VAL B 97 SHEET 6 B 9 ASN B 153 VAL B 155 1 O ASN B 153 N LEU B 122 SHEET 7 B 9 PHE B 176 SER B 179 1 O ILE B 178 N TYR B 154 SHEET 8 B 9 ALA B 198 VAL B 201 1 O ILE B 200 N SER B 179 SHEET 9 B 9 LEU B 15 MET B 19 1 N ILE B 16 O ILE B 199 SITE 1 AC1 19 ASP A 20 LYS A 42 ASP A 70 LYS A 72 SITE 2 AC1 19 MET A 126 SER A 127 PRO A 180 GLN A 185 SITE 3 AC1 19 GLY A 202 ARG A 203 HOH A 405 HOH A 406 SITE 4 AC1 19 HOH A 408 HOH A 414 HOH A 415 HOH A 424 SITE 5 AC1 19 ASP B 75 ILE B 76 THR B 79 SITE 1 AC2 10 GLU A 33 ASN A 210 HOH A 429 HOH A 432 SITE 2 AC2 10 HOH A 560 SER B 158 THR B 159 PRO B 161 SITE 3 AC2 10 GLY B 186 HOH B 442 SITE 1 AC3 3 GLN A 185 ARG A 203 HOH A 413 SITE 1 AC4 4 ALA A 103 ASP A 104 ARG A 107 LEU A 149 SITE 1 AC5 19 ASP A 75 ILE A 76 THR A 79 ASP B 20 SITE 2 AC5 19 LYS B 42 ASP B 70 LYS B 72 MET B 126 SITE 3 AC5 19 SER B 127 PRO B 180 GLN B 185 GLY B 202 SITE 4 AC5 19 ARG B 203 HOH B 402 HOH B 405 HOH B 407 SITE 5 AC5 19 HOH B 417 HOH B 420 HOH B 440 CRYST1 59.560 64.239 61.820 90.00 115.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016790 0.000000 0.007977 0.00000 SCALE2 0.000000 0.015567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017909 0.00000