HEADER DNA BINDING PROTEIN/DNA 05-DEC-13 4NW3 TITLE CRYSTAL STRUCTURE OF MLL CXXC DOMAIN IN COMPLEX WITH A CPG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE 2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CXXC ZINC FINGER DOMAIN (UNP RESIDUES 1147-1204); COMPND 5 SYNONYM: LYSINE N-METHYLTRANSFERASE 2A, ALL-1, CXXC-TYPE ZINC FINGER COMPND 6 PROTEIN 7, MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA, COMPND 7 MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA PROTEIN 1, TRITHORAX-LIKE COMPND 8 PROTEIN, ZINC FINGER PROTEIN HRX; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*GP*CP*CP*AP*TP*CP*GP*AP*TP*GP*GP*C)-3'; COMPND 12 CHAIN: B, C; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: CPG ISLAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS HISTONE-LYSINE N-METHYLTRANSFERASE, CPG ISLAND, CG ISLAND, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.BIAN,W.TEMPEL,X.CHAO,J.R.WALKER,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 20-SEP-23 4NW3 1 REMARK REVDAT 4 24-AUG-22 4NW3 1 JRNL REMARK SEQADV LINK REVDAT 3 03-JAN-18 4NW3 1 JRNL REVDAT 2 22-NOV-17 4NW3 1 REMARK REVDAT 1 23-APR-14 4NW3 0 JRNL AUTH C.XU,K.LIU,M.LEI,A.YANG,Y.LI,T.R.HUGHES,J.MIN JRNL TITL DNA SEQUENCE RECOGNITION OF HUMAN CXXC DOMAINS AND THEIR JRNL TITL 2 STRUCTURAL DETERMINANTS. JRNL REF STRUCTURE V. 26 85 2018 JRNL REFN ISSN 0969-2126 JRNL PMID 29276034 JRNL DOI 10.1016/J.STR.2017.11.022 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 4190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.4850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 355 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : -4.59000 REMARK 3 B33 (A**2) : 5.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.729 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 910 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 599 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1322 ; 1.326 ; 1.469 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1389 ; 2.431 ; 3.012 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 50 ; 4.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ;44.517 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 63 ;16.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;10.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 123 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 712 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 198 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 203 ; 2.115 ; 5.773 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 202 ; 2.115 ; 5.757 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 252 ; 3.323 ; 8.635 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 1 12 C 1 12 892 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1150 A 1200 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3136 -5.7298 23.2058 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.3656 REMARK 3 T33: 0.3492 T12: -0.1488 REMARK 3 T13: -0.0184 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 1.5127 L22: 1.4755 REMARK 3 L33: 9.9494 L12: 0.0888 REMARK 3 L13: -1.3363 L23: 0.8457 REMARK 3 S TENSOR REMARK 3 S11: -0.2163 S12: 0.2512 S13: 0.2671 REMARK 3 S21: 0.2562 S22: 0.2878 S23: -0.2664 REMARK 3 S31: 0.1276 S32: 0.1366 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9690 -5.9900 10.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.3811 REMARK 3 T33: 0.3198 T12: -0.2552 REMARK 3 T13: -0.0329 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 5.7242 L22: 7.3825 REMARK 3 L33: 5.1878 L12: 0.2359 REMARK 3 L13: -1.5483 L23: 2.1957 REMARK 3 S TENSOR REMARK 3 S11: -0.2205 S12: 0.0040 S13: 0.4862 REMARK 3 S21: -0.3259 S22: 0.0083 S23: 0.2667 REMARK 3 S31: -0.0178 S32: -0.1157 S33: 0.2123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1049 -4.9465 11.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.5246 REMARK 3 T33: 0.4367 T12: -0.3048 REMARK 3 T13: -0.0067 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 7.8320 L22: 10.8013 REMARK 3 L33: 11.9459 L12: 1.2730 REMARK 3 L13: 0.7217 L23: 1.6880 REMARK 3 S TENSOR REMARK 3 S11: -0.5479 S12: 1.0319 S13: 0.2112 REMARK 3 S21: -0.5976 S22: 0.6366 S23: -0.0769 REMARK 3 S31: -0.0676 S32: -0.2073 S33: -0.0888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTHORS NOTE THE SMALL NUMBER OF REMARK 3 REFLECTIONS IN THE FREE SET, WHICH REDUCES RELIABILITY OF CROSS REMARK 3 VALIDATION. COOT, AUTOBUSTER AND THE MOLPROBITY SERVER WERE ALSO REMARK 3 USED DURING REFINEMENT. REMARK 4 REMARK 4 4NW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28231 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.95100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3QMB AND 3QMG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.05 M SODIUM TARTRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.16350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.11250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.16350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.11250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1129 REMARK 465 HIS A 1130 REMARK 465 HIS A 1131 REMARK 465 HIS A 1132 REMARK 465 HIS A 1133 REMARK 465 HIS A 1134 REMARK 465 HIS A 1135 REMARK 465 SER A 1136 REMARK 465 SER A 1137 REMARK 465 GLY A 1138 REMARK 465 ARG A 1139 REMARK 465 GLU A 1140 REMARK 465 ASN A 1141 REMARK 465 LEU A 1142 REMARK 465 TYR A 1143 REMARK 465 PHE A 1144 REMARK 465 GLN A 1145 REMARK 465 GLY A 1146 REMARK 465 LYS A 1147 REMARK 465 LYS A 1148 REMARK 465 GLY A 1149 REMARK 465 PRO A 1201 REMARK 465 SER A 1202 REMARK 465 LYS A 1203 REMARK 465 ALA A 1204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1150 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1151 NE CZ NH1 NH2 REMARK 470 ARG A1153 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1178 CD CE NZ REMARK 470 ARG A1182 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1184 CG1 CG2 CD1 REMARK 470 LYS A1185 CG CD CE NZ REMARK 470 LYS A1190 CE NZ REMARK 470 GLN A1198 CD OE1 NE2 REMARK 470 TRP A1199 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1199 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 DG C 1 C5' - C4' - O4' ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1155 SG REMARK 620 2 CYS A1158 SG 110.6 REMARK 620 3 CYS A1161 SG 139.0 97.1 REMARK 620 4 CYS A1194 SG 103.8 107.5 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1167 SG REMARK 620 2 CYS A1170 SG 98.6 REMARK 620 3 CYS A1173 SG 110.2 109.5 REMARK 620 4 CYS A1189 SG 112.2 120.4 105.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1302 DBREF 4NW3 A 1147 1204 UNP Q03164 KMT2A_HUMAN 1147 1204 DBREF 4NW3 B 1 12 PDB 4NW3 4NW3 1 12 DBREF 4NW3 C 1 12 PDB 4NW3 4NW3 1 12 SEQADV 4NW3 MET A 1129 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1130 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1131 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1132 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1133 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1134 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 HIS A 1135 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 SER A 1136 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 SER A 1137 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 GLY A 1138 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 ARG A 1139 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 GLU A 1140 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 ASN A 1141 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 LEU A 1142 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 TYR A 1143 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 PHE A 1144 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 GLN A 1145 UNP Q03164 EXPRESSION TAG SEQADV 4NW3 GLY A 1146 UNP Q03164 EXPRESSION TAG SEQRES 1 A 76 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 76 LEU TYR PHE GLN GLY LYS LYS GLY ARG ARG SER ARG ARG SEQRES 3 A 76 CYS GLY GLN CYS PRO GLY CYS GLN VAL PRO GLU ASP CYS SEQRES 4 A 76 GLY VAL CYS THR ASN CYS LEU ASP LYS PRO LYS PHE GLY SEQRES 5 A 76 GLY ARG ASN ILE LYS LYS GLN CYS CYS LYS MET ARG LYS SEQRES 6 A 76 CYS GLN ASN LEU GLN TRP MET PRO SER LYS ALA SEQRES 1 B 12 DG DC DC DA DT DC DG DA DT DG DG DC SEQRES 1 C 12 DG DC DC DA DT DC DG DA DT DG DG DC HET ZN A1301 1 HET ZN A1302 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) HELIX 1 1 CYS A 1158 VAL A 1163 1 6 HELIX 2 2 CYS A 1170 LYS A 1176 1 7 HELIX 3 3 PRO A 1177 GLY A 1180 5 4 SHEET 1 A 2 SER A1152 ARG A1153 0 SHEET 2 A 2 GLN A1198 TRP A1199 -1 O GLN A1198 N ARG A1153 LINK SG CYS A1155 ZN ZN A1302 1555 1555 2.35 LINK SG CYS A1158 ZN ZN A1302 1555 1555 2.36 LINK SG CYS A1161 ZN ZN A1302 1555 1555 2.32 LINK SG CYS A1167 ZN ZN A1301 1555 1555 2.33 LINK SG CYS A1170 ZN ZN A1301 1555 1555 2.35 LINK SG CYS A1173 ZN ZN A1301 1555 1555 2.30 LINK SG CYS A1189 ZN ZN A1301 1555 1555 2.29 LINK SG CYS A1194 ZN ZN A1302 1555 1555 2.36 SITE 1 AC1 5 CYS A1167 CYS A1170 CYS A1173 CYS A1189 SITE 2 AC1 5 LYS A1190 SITE 1 AC2 5 CYS A1155 GLY A1156 CYS A1158 CYS A1161 SITE 2 AC2 5 CYS A1194 CRYST1 70.327 40.225 60.959 90.00 93.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014219 0.000000 0.000872 0.00000 SCALE2 0.000000 0.024860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016435 0.00000