HEADER IMMUNE SYSTEM 06-DEC-13 4NWU TITLE CRYSTAL STRUCTURE OF APE1551, AN ANTI-HUMAN NGF FAB WITH A NINE AMINO TITLE 2 ACID INSERTION IN CDR H1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APE1551 AB FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: APE1551 AB FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA-SANDWICH, HUMAN BETA NERVE GROWTH FACTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.VERDINO,R.L.STANFIELD,I.A.WILSON REVDAT 6 03-APR-24 4NWU 1 REMARK REVDAT 5 02-JUN-21 4NWU 1 SOURCE REMARK DBREF REVDAT 4 02-AUG-17 4NWU 1 SOURCE REMARK REVDAT 3 10-DEC-14 4NWU 1 JRNL REVDAT 2 29-OCT-14 4NWU 1 JRNL REVDAT 1 22-OCT-14 4NWU 0 JRNL AUTH P.M.BOWERS,P.VERDINO,Z.WANG,J.DA SILVA CORREIA,M.CHHOA, JRNL AUTH 2 G.MACONDRAY,M.DO,T.Y.NEBEN,R.A.HORLICK,R.L.STANFIELD, JRNL AUTH 3 I.A.WILSON,D.J.KING JRNL TITL NUCLEOTIDE INSERTIONS AND DELETIONS COMPLEMENT POINT JRNL TITL 2 MUTATIONS TO MASSIVELY EXPAND THE DIVERSITY CREATED BY JRNL TITL 3 SOMATIC HYPERMUTATION OF ANTIBODIES. JRNL REF J.BIOL.CHEM. V. 289 33557 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25320089 JRNL DOI 10.1074/JBC.M114.607176 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 61414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 248 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : 3.46000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3882 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3552 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5351 ; 1.984 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8277 ; 0.897 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;33.803 ;24.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;14.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4572 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 905 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4021 19.5611 28.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.2061 REMARK 3 T33: 0.2462 T12: 0.0161 REMARK 3 T13: 0.0339 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.3086 L22: 2.3729 REMARK 3 L33: 2.8122 L12: 0.7242 REMARK 3 L13: 0.6237 L23: 1.5520 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.1192 S13: -0.2353 REMARK 3 S21: 0.0963 S22: -0.1267 S23: 0.0058 REMARK 3 S31: 0.2924 S32: 0.0505 S33: 0.0855 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7702 19.0572 29.7301 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.0784 REMARK 3 T33: 0.2320 T12: -0.0319 REMARK 3 T13: -0.0088 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.3121 L22: 0.6235 REMARK 3 L33: 3.8909 L12: -0.1494 REMARK 3 L13: -2.1727 L23: 0.1180 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0619 S13: 0.0074 REMARK 3 S21: -0.0685 S22: 0.0374 S23: 0.0360 REMARK 3 S31: 0.0792 S32: -0.1116 S33: -0.0780 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 230 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2810 27.4123 60.6045 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.0069 REMARK 3 T33: 0.1689 T12: -0.0077 REMARK 3 T13: -0.0054 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.7299 L22: 1.1484 REMARK 3 L33: 2.7446 L12: 0.4762 REMARK 3 L13: -1.5448 L23: -0.5163 REMARK 3 S TENSOR REMARK 3 S11: -0.1257 S12: -0.0051 S13: -0.0301 REMARK 3 S21: 0.0505 S22: 0.0662 S23: 0.0895 REMARK 3 S31: 0.0892 S32: 0.0182 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4456 38.4919 62.5482 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.0325 REMARK 3 T33: 0.1843 T12: 0.0046 REMARK 3 T13: 0.0057 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.7081 L22: 2.1259 REMARK 3 L33: 1.9741 L12: 0.9646 REMARK 3 L13: 1.3298 L23: 1.3402 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: -0.1374 S13: 0.1287 REMARK 3 S21: -0.0528 S22: -0.0065 S23: 0.0427 REMARK 3 S31: -0.0927 S32: -0.1895 S33: 0.0829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS 6M-PAD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APE1531 FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 6000, 0.1 M CITRIC ACID PH6.0 REMARK 280 -7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.52650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.12800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.52650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.12800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 322 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 ASP H 26A REMARK 465 THR H 26B REMARK 465 PHE H 26C REMARK 465 SER H 26D REMARK 465 ASN H 26E REMARK 465 TYR H 26F REMARK 465 ALA H 26G REMARK 465 THR H 26H REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 459 O HOH L 479 1.94 REMARK 500 NH2 ARG L 108 O HOH L 388 2.04 REMARK 500 OG SER L 127 O HOH L 492 2.14 REMARK 500 O ALA H 118 O HOH H 451 2.17 REMARK 500 O HOH L 502 O HOH L 503 2.18 REMARK 500 OD1 ASP H 33C ND2 ASN H 33G 2.19 REMARK 500 NZ LYS L 169 O HOH L 350 2.19 REMARK 500 O HOH H 423 O HOH H 475 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 307 O HOH L 436 2657 1.97 REMARK 500 OE2 GLU L 17 NZ LYS L 190 4547 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 121 CB - CG - CD1 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG L 103 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU L 179 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 76 50.34 33.55 REMARK 500 ASN H 100I -152.13 -126.40 REMARK 500 TYR H 100J 158.00 -46.46 REMARK 500 THR H 200 -34.34 -130.62 REMARK 500 ALA L 51 -35.31 69.75 REMARK 500 ALA L 51 -35.31 69.07 REMARK 500 SER L 77 56.55 39.15 REMARK 500 ALA L 84 -179.07 179.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 4NWU H 1 121 PDB 4NWU 4NWU 1 121 DBREF 4NWU H 122 232 UNP P01857 IGHG1_HUMAN 9 105 DBREF 4NWU L 1 105 PDB 4NWU 4NWU 1 105 DBREF 4NWU L 106 214 UNP Q8TCD0 Q8TCD0_HUMAN 131 239 SEQRES 1 H 242 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 242 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 242 ASP THR PHE SER ASN TYR ALA THR GLY ASP THR PHE SER SEQRES 4 H 242 ASN TYR ALA ILE SER TRP VAL ARG GLN ALA PRO GLY GLN SEQRES 5 H 242 GLY PHE GLU TRP MET GLY GLY ILE ILE PRO ILE PHE GLY SEQRES 6 H 242 THR ALA ASN TYR ALA GLN LYS PHE GLN GLY ARG VAL THR SEQRES 7 H 242 ILE THR ALA ASP GLU SER THR SER THR ALA TYR MET GLU SEQRES 8 H 242 LEU SER SER LEU ARG SER GLU ASP THR ALA VAL TYR TYR SEQRES 9 H 242 CYS ALA ARG GLY PRO GLU TYR TYR ASP TYR VAL TRP GLY SEQRES 10 H 242 SER TYR ARG TYR ASN TYR PHE ASP TYR TRP GLY GLN GLY SEQRES 11 H 242 THR LEU VAL THR VAL SER SER GLY SER ALA SER ALA PRO SEQRES 12 H 242 THR LEU PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 13 H 242 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 14 H 242 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 15 H 242 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 16 H 242 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 17 H 242 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 18 H 242 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 19 H 242 VAL GLU PRO LYS SER CYS ASP LYS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR ASP ASN TYR PRO ILE THR PHE SEQRES 9 L 220 GLY GLN GLY THR ARG LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *434(H2 O) HELIX 1 1 ASP H 33C TYR H 33H 1 6 HELIX 2 2 GLU H 73 THR H 75 5 3 HELIX 3 3 ARG H 83 THR H 87 5 5 HELIX 4 4 SER H 163 ALA H 165 5 3 HELIX 5 5 SER H 196 LEU H 198 5 3 HELIX 6 6 LYS H 213 ASN H 216 5 4 HELIX 7 7 GLN L 79 VAL L 83 5 5 HELIX 8 8 SER L 121 SER L 127 1 7 HELIX 9 9 LYS L 183 GLU L 187 1 5 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 B 6 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 ALA H 33I GLN H 39 -1 N SER H 35 O ALA H 93 SHEET 5 B 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 ALA H 57 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 C 4 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 D 2 GLU H 97 ASP H 100 0 SHEET 2 D 2 SER H 100E TYR H 100H-1 O SER H 100E N ASP H 100 SHEET 1 E 4 THR H 120 LEU H 124 0 SHEET 2 E 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 E 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 E 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 F 4 THR H 133 SER H 134 0 SHEET 2 F 4 THR H 137 TYR H 147 -1 O THR H 137 N SER H 134 SHEET 3 F 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 F 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 G 3 THR H 153 TRP H 157 0 SHEET 2 G 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 G 3 THR H 217 VAL H 225 -1 O VAL H 219 N VAL H 210 SHEET 1 H 4 MET L 4 SER L 7 0 SHEET 2 H 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 H 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 H 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 I 6 SER L 10 SER L 14 0 SHEET 2 I 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 I 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 I 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 I 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 I 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 J 4 SER L 10 SER L 14 0 SHEET 2 J 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 J 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 J 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 K 2 LEU L 27C TYR L 27D 0 SHEET 2 K 2 LYS L 30 ASN L 31 -1 O LYS L 30 N TYR L 27D SHEET 1 L 4 SER L 114 PHE L 118 0 SHEET 2 L 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 L 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 L 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 M 4 ALA L 153 LEU L 154 0 SHEET 2 M 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 M 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 M 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.09 SSBOND 2 CYS H 142 CYS H 208 1555 1555 2.11 SSBOND 3 CYS H 230 CYS L 214 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.21 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 148 PRO H 149 0 -14.06 CISPEP 2 GLU H 150 PRO H 151 0 -3.89 CISPEP 3 SER L 7 PRO L 8 0 -10.30 CISPEP 4 TYR L 94 PRO L 95 0 7.42 CISPEP 5 TYR L 94 PRO L 95 0 -5.82 CISPEP 6 TYR L 140 PRO L 141 0 7.02 CRYST1 127.053 66.256 63.884 90.00 108.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007871 0.000000 0.002639 0.00000 SCALE2 0.000000 0.015093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016510 0.00000