HEADER TRANSFERASE 09-DEC-13 4NXW TITLE CRYSTAL STRUCTURE OF THE CYTOSOLIC DOMAIN OF HUMAN MID51 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL DYNAMIC PROTEIN MID51; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 119-463; COMPND 5 SYNONYM: MITOCHONDRIAL DYNAMIC PROTEIN OF 51 KDA, MITOCHONDRIAL COMPND 6 ELONGATION FACTOR 1, SMITH-MAGENIS SYNDROME CHROMOSOMAL REGION COMPND 7 CANDIDATE GENE 7 PROTEIN-LIKE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CANDIDATE 7-LIKE, MID51, MIEF1, SMCR7L, SMITH-MAGENIS SYNDROME SOURCE 6 CHROMOSOME REGION; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS PROTEIN-NUCLEOTIDE COMPLEX, NUCLEOTIDYLTRANSFERASE, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, ADP, GDP, MITOCHONDRIAL FISSION, MITOCHONDRIA MEMBRANE- KEYWDS 3 ANCHORED, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.RICHTER,M.KVANSAKUL,M.T.RYAN REVDAT 3 28-FEB-24 4NXW 1 REMARK SEQADV REVDAT 2 19-MAR-14 4NXW 1 JRNL REVDAT 1 25-DEC-13 4NXW 0 JRNL AUTH V.RICHTER,C.S.PALMER,L.D.OSELLAME,A.P.SINGH,K.ELGASS, JRNL AUTH 2 D.A.STROUD,H.SESAKI,M.KVANSAKUL,M.T.RYAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF MID51, A DYNAMIN JRNL TITL 2 RECEPTOR REQUIRED FOR MITOCHONDRIAL FISSION. JRNL REF J.CELL BIOL. V. 204 477 2014 JRNL REFN ISSN 0021-9525 JRNL PMID 24515348 JRNL DOI 10.1083/JCB.201311014 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6230 - 4.3592 1.00 3025 156 0.1763 0.1845 REMARK 3 2 4.3592 - 3.4605 1.00 2831 137 0.1793 0.2199 REMARK 3 3 3.4605 - 3.0232 1.00 2733 163 0.2195 0.2933 REMARK 3 4 3.0232 - 2.7469 1.00 2745 156 0.2357 0.3095 REMARK 3 5 2.7469 - 2.5500 1.00 2736 145 0.2409 0.3240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2613 REMARK 3 ANGLE : 1.005 3571 REMARK 3 CHIRALITY : 0.033 416 REMARK 3 PLANARITY : 0.004 454 REMARK 3 DIHEDRAL : 15.245 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1898 -32.2907 -17.7289 REMARK 3 T TENSOR REMARK 3 T11: 0.3688 T22: 0.1733 REMARK 3 T33: 0.1740 T12: 0.0739 REMARK 3 T13: 0.0343 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.6211 L22: 3.0619 REMARK 3 L33: 1.3988 L12: 0.1420 REMARK 3 L13: -0.3828 L23: 0.9814 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0219 S13: -0.0007 REMARK 3 S21: -0.5713 S22: -0.1923 S23: 0.3907 REMARK 3 S31: -0.1403 S32: -0.1927 S33: 0.0994 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9590 -29.0952 -21.1898 REMARK 3 T TENSOR REMARK 3 T11: 0.5856 T22: 0.2716 REMARK 3 T33: 0.2716 T12: 0.0936 REMARK 3 T13: 0.0026 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.1020 L22: 1.6875 REMARK 3 L33: 1.8086 L12: -0.3280 REMARK 3 L13: -0.5417 L23: 0.4936 REMARK 3 S TENSOR REMARK 3 S11: 0.1462 S12: 0.4416 S13: 0.3023 REMARK 3 S21: -0.8149 S22: -0.2476 S23: 0.1528 REMARK 3 S31: -0.4252 S32: -0.3156 S33: 0.0823 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0136 -23.4361 -16.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.3943 T22: 0.1810 REMARK 3 T33: 0.3922 T12: -0.0257 REMARK 3 T13: 0.2554 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.2905 L22: 1.3525 REMARK 3 L33: 2.1056 L12: 0.1644 REMARK 3 L13: -0.0745 L23: -0.1106 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: -0.0791 S13: 0.2119 REMARK 3 S21: -0.4261 S22: 0.0905 S23: -0.4894 REMARK 3 S31: -0.1420 S32: 0.3656 S33: -0.0792 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14827 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.30 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M SODIUM MALONATE, 0.01M ADP, 0.01M REMARK 280 MANGANESE CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.87450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.76700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.76700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.31175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.76700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.76700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.43725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.76700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.76700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 190.31175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.76700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.76700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.43725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.87450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 663 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 117 REMARK 465 SER A 118 REMARK 465 ALA A 119 REMARK 465 ARG A 120 REMARK 465 LYS A 121 REMARK 465 GLY A 122 REMARK 465 GLN A 123 REMARK 465 VAL A 124 REMARK 465 ASP A 125 REMARK 465 LEU A 126 REMARK 465 LYS A 127 REMARK 465 LYS A 128 REMARK 465 SER A 129 REMARK 465 ARG A 130 REMARK 465 LEU A 131 REMARK 465 ARG A 132 REMARK 465 THR A 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 133 CG SD CE REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 305 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 158 O HOH A 620 1.56 REMARK 500 OD2 ASP A 192 HH12 ARG A 342 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR A 256 OE2 GLU A 441 5444 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 146 -56.52 -125.59 REMARK 500 PRO A 180 96.36 -68.48 REMARK 500 VAL A 197 -62.42 68.44 REMARK 500 ASP A 200 -0.54 -144.55 REMARK 500 ASN A 237 -141.20 53.01 REMARK 500 ARG A 243 -132.24 -111.53 REMARK 500 SER A 357 29.43 49.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NXT RELATED DB: PDB REMARK 900 RELATED ID: 4NXU RELATED DB: PDB REMARK 900 RELATED ID: 4NXV RELATED DB: PDB REMARK 900 RELATED ID: 4NXX RELATED DB: PDB DBREF 4NXW A 119 463 UNP Q9NQG6 MID51_HUMAN 119 463 SEQADV 4NXW GLY A 117 UNP Q9NQG6 EXPRESSION TAG SEQADV 4NXW SER A 118 UNP Q9NQG6 EXPRESSION TAG SEQADV 4NXW A UNP Q9NQG6 PRO 238 DELETION SEQADV 4NXW A UNP Q9NQG6 GLU 239 DELETION SEQADV 4NXW A UNP Q9NQG6 TYR 240 DELETION SEQADV 4NXW A UNP Q9NQG6 PHE 241 DELETION SEQADV 4NXW A UNP Q9NQG6 PRO 242 DELETION SEQRES 1 A 342 GLY SER ALA ARG LYS GLY GLN VAL ASP LEU LYS LYS SER SEQRES 2 A 342 ARG LEU ARG MET SER LEU GLN GLU LYS LEU LEU THR TYR SEQRES 3 A 342 TYR ARG ASN ARG ALA ALA ILE PRO ALA GLY GLU GLN ALA SEQRES 4 A 342 ARG ALA LYS GLN ALA ALA VAL ASP ILE CYS ALA GLU LEU SEQRES 5 A 342 ARG SER PHE LEU ARG ALA LYS LEU PRO ASP MET PRO LEU SEQRES 6 A 342 ARG ASP MET TYR LEU SER GLY SER LEU TYR ASP ASP LEU SEQRES 7 A 342 GLN VAL VAL THR ALA ASP HIS ILE GLN LEU ILE VAL PRO SEQRES 8 A 342 LEU VAL LEU GLU GLN ASN LEU TRP SER CYS ILE PRO GLY SEQRES 9 A 342 GLU ASP THR ILE MET ASN VAL PRO GLY PHE PHE LEU VAL SEQRES 10 A 342 ARG ARG GLU ASN ARG GLY SER SER TYR TRP ASP ARG CYS SEQRES 11 A 342 VAL VAL GLY GLY TYR LEU SER PRO LYS THR VAL ALA ASP SEQRES 12 A 342 THR PHE GLU LYS VAL VAL ALA GLY SER ILE ASN TRP PRO SEQRES 13 A 342 ALA ILE GLY SER LEU LEU ASP TYR VAL ILE ARG PRO ALA SEQRES 14 A 342 PRO PRO PRO GLU ALA LEU THR LEU GLU VAL GLN TYR GLU SEQRES 15 A 342 ARG ASP LYS HIS LEU PHE ILE ASP PHE LEU PRO SER VAL SEQRES 16 A 342 THR LEU GLY ASP THR VAL LEU VAL ALA LYS PRO HIS ARG SEQRES 17 A 342 LEU ALA GLN TYR ASP ASN LEU TRP ARG LEU SER LEU ARG SEQRES 18 A 342 PRO ALA GLU THR ALA ARG LEU ARG ALA LEU ASP GLN ALA SEQRES 19 A 342 ASP SER GLY CYS ARG SER LEU CYS LEU LYS ILE LEU LYS SEQRES 20 A 342 ALA ILE CYS LYS SER THR PRO ALA LEU GLY HIS LEU THR SEQRES 21 A 342 ALA SER GLN LEU THR ASN VAL ILE LEU HIS LEU ALA GLN SEQRES 22 A 342 GLU GLU ALA ASP TRP SER PRO ASP MET LEU ALA ASP ARG SEQRES 23 A 342 PHE LEU GLN ALA LEU ARG GLY LEU ILE SER TYR LEU GLU SEQRES 24 A 342 ALA GLY VAL LEU PRO SER ALA LEU ASN PRO LYS VAL ASN SEQRES 25 A 342 LEU PHE ALA GLU LEU THR PRO GLU GLU ILE ASP GLU LEU SEQRES 26 A 342 GLY TYR THR LEU TYR CYS SER LEU SER GLU PRO GLU VAL SEQRES 27 A 342 LEU LEU GLN THR HET ADP A 501 39 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *94(H2 O) HELIX 1 1 SER A 134 ARG A 146 1 13 HELIX 2 2 PRO A 150 LEU A 176 1 27 HELIX 3 3 GLU A 221 THR A 223 5 3 HELIX 4 4 SER A 246 ARG A 250 5 5 HELIX 5 5 SER A 258 GLY A 272 1 15 HELIX 6 6 SER A 273 ASN A 275 5 3 HELIX 7 7 GLY A 280 ASP A 284 5 5 HELIX 8 8 LEU A 330 ASP A 334 5 5 HELIX 9 9 LEU A 341 SER A 357 1 17 HELIX 10 10 CYS A 359 LYS A 372 1 14 HELIX 11 11 ALA A 376 LEU A 380 5 5 HELIX 12 12 THR A 381 GLU A 396 1 16 HELIX 13 13 SER A 400 ASP A 402 5 3 HELIX 14 14 MET A 403 GLY A 422 1 20 HELIX 15 15 THR A 439 LEU A 450 1 12 HELIX 16 16 GLU A 456 GLN A 462 5 7 SHEET 1 A 7 TYR A 185 SER A 187 0 SHEET 2 A 7 HIS A 201 PRO A 207 -1 O GLN A 203 N SER A 187 SHEET 3 A 7 LYS A 306 LEU A 318 1 O ASP A 311 N LEU A 204 SHEET 4 A 7 THR A 321 VAL A 324 -1 O LEU A 323 N VAL A 316 SHEET 5 A 7 TRP A 337 LEU A 339 -1 O ARG A 338 N VAL A 324 SHEET 6 A 7 PHE A 230 ARG A 235 -1 N PHE A 231 O TRP A 337 SHEET 7 A 7 TRP A 215 PRO A 219 -1 N ILE A 218 O LEU A 232 SHEET 1 B 5 TYR A 185 SER A 187 0 SHEET 2 B 5 HIS A 201 PRO A 207 -1 O GLN A 203 N SER A 187 SHEET 3 B 5 LYS A 306 LEU A 318 1 O ASP A 311 N LEU A 204 SHEET 4 B 5 THR A 297 TYR A 302 -1 N LEU A 298 O ILE A 310 SHEET 5 B 5 VAL A 286 PRO A 289 -1 N ARG A 288 O GLU A 299 SHEET 1 C 2 VAL A 252 VAL A 253 0 SHEET 2 C 2 TYR A 256 LEU A 257 -1 O TYR A 256 N VAL A 253 CISPEP 1 PRO A 292 PRO A 293 0 4.01 CISPEP 2 GLU A 303 ARG A 304 0 -2.39 SITE 1 AC1 14 SER A 187 SER A 189 HIS A 201 GLN A 203 SITE 2 AC1 14 LEU A 313 LYS A 326 SER A 340 ARG A 342 SITE 3 AC1 14 LYS A 368 ALA A 382 HOH A 604 HOH A 613 SITE 4 AC1 14 HOH A 626 HOH A 680 CRYST1 57.534 57.534 253.749 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003941 0.00000