data_4NYA # _entry.id 4NYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NYA pdb_00004nya 10.2210/pdb4nya/pdb NDB NA2826 ? ? RCSB RCSB083807 ? ? WWPDB D_1000083807 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NYB 'Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine' unspecified PDB 4NYC 'Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine' unspecified PDB 4NYD 'Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine' unspecified PDB 4NYG 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine' unspecified # _pdbx_database_status.entry_id 4NYA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Warner, K.D.' 1 'Homan, P.' 2 'Weeks, K.M.' 3 'Smith, A.G.' 4 'Abell, C.' 5 ;Ferre-D'Amare, A.R. ; 6 # _citation.id primary _citation.title 'Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 21 _citation.page_first 591 _citation.page_last 595 _citation.year 2014 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24768306 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2014.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warner, K.D.' 1 ? primary 'Homan, P.' 2 ? primary 'Weeks, K.M.' 3 ? primary 'Smith, A.G.' 4 ? primary 'Abell, C.' 5 ? primary ;Ferre-D'Amare, A.R. ; 6 ? # _cell.entry_id 4NYA _cell.length_a 149.730 _cell.length_b 29.890 _cell.length_c 95.430 _cell.angle_alpha 90.00 _cell.angle_beta 93.94 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NYA _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thiM TPP riboswitch' 26042.248 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 15 ? ? ? ? 3 non-polymer syn '5-(azidomethyl)-2-methylpyrimidin-4-amine' 164.168 2 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAA GUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can GGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 C n 1 5 U n 1 6 C n 1 7 G n 1 8 G n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 C n 1 15 C n 1 16 U n 1 17 U n 1 18 C n 1 19 U n 1 20 G n 1 21 C n 1 22 G n 1 23 U n 1 24 G n 1 25 A n 1 26 A n 1 27 G n 1 28 G n 1 29 C n 1 30 U n 1 31 G n 1 32 A n 1 33 G n 1 34 A n 1 35 A n 1 36 A n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 U n 1 44 A n 1 45 U n 1 46 C n 1 47 A n 1 48 C n 1 49 C n 1 50 U n 1 51 G n 1 52 A n 1 53 U n 1 54 C n 1 55 U n 1 56 G n 1 57 G n 1 58 A n 1 59 U n 1 60 A n 1 61 A n 1 62 U n 1 63 G n 1 64 C n 1 65 C n 1 66 A n 1 67 G n 1 68 C n 1 69 G n 1 70 U n 1 71 A n 1 72 G n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 G n 1 78 U n 1 79 U n 1 80 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4NYA _struct_ref.pdbx_db_accession 4NYA _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;(GTP)GACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAA GUU(CCC) ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NYA A 1 ? 80 ? 4NYA 10 ? 89 ? 10 89 2 1 4NYA B 1 ? 80 ? 4NYA 10 ? 89 ? 10 89 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2QB non-polymer . '5-(azidomethyl)-2-methylpyrimidin-4-amine' ? 'C6 H8 N6' 164.168 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.crystals_number 1 _exptl.entry_id 4NYA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.1 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '30% PEG4000, 0.1 M sodium acetate, pH 5.1, 0.3 M ammonium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-11-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'cryo-cooled double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4NYA _reflns.d_resolution_high 2.650 _reflns.d_resolution_low 30.0 _reflns.number_obs 11991 _reflns.pdbx_Rmerge_I_obs 0.145 _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.pdbx_chi_squared 2.162 _reflns.pdbx_redundancy 3.3 _reflns.percent_possible_obs 93.3 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.650 2.700 ? ? ? 0.571 ? ? 0.816 2.9 ? 577 90.2 1 1 2.700 2.740 ? ? ? 0.506 ? ? 1.018 2.8 ? 616 94.8 2 1 2.740 2.800 ? ? ? 0.503 ? ? 1.004 2.9 ? 566 94.0 3 1 2.800 2.850 ? ? ? 0.487 ? ? 1.031 3.0 ? 593 95.5 4 1 2.850 2.920 ? ? ? 0.403 ? ? 1.197 2.8 ? 618 96.1 5 1 2.920 2.980 ? ? ? 0.350 ? ? 1.427 2.9 ? 595 94.3 6 1 2.980 3.060 ? ? ? 0.331 ? ? 1.696 3.3 ? 623 98.1 7 1 3.060 3.140 ? ? ? 0.300 ? ? 1.841 3.3 ? 620 97.9 8 1 3.140 3.230 ? ? ? 0.261 ? ? 2.017 3.3 ? 598 94.8 9 1 3.230 3.340 ? ? ? 0.250 ? ? 2.223 3.4 ? 610 93.1 10 1 3.340 3.460 ? ? ? 0.253 ? ? 2.178 3.4 ? 568 93.0 11 1 3.460 3.600 ? ? ? 0.235 ? ? 2.331 3.3 ? 589 92.2 12 1 3.600 3.760 ? ? ? 0.222 ? ? 2.133 3.3 ? 601 91.8 13 1 3.760 3.960 ? ? ? 0.209 ? ? 2.250 3.6 ? 602 95.1 14 1 3.960 4.200 ? ? ? 0.167 ? ? 2.408 3.6 ? 596 92.7 15 1 4.200 4.530 ? ? ? 0.151 ? ? 2.498 3.7 ? 587 91.1 16 1 4.530 4.980 ? ? ? 0.132 ? ? 2.794 3.4 ? 594 89.6 17 1 4.980 5.700 ? ? ? 0.109 ? ? 3.119 3.6 ? 602 93.9 18 1 5.700 7.160 ? ? ? 0.106 ? ? 3.408 3.5 ? 603 89.7 19 1 7.160 30.000 ? ? ? 0.084 ? ? 4.272 3.2 ? 633 89.4 20 1 # _refine.entry_id 4NYA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.650 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.0 _refine.ls_number_reflns_obs 11499 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2251 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2730 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.3 _refine.ls_number_reflns_R_free 1193 _refine.ls_number_reflns_R_work 10306 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 62.5396 _refine.solvent_model_param_bsol 26.6291 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -7.3920 _refine.aniso_B[2][2] 13.3660 _refine.aniso_B[3][3] -5.9730 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -6.2570 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2GDI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 107.670 _refine.B_iso_min 28.050 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3410 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 3452 _refine_hist.d_res_high 2.650 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_mcbond_it ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 1.563 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.524 2.500 ? ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 cycp-dna-rna_rep-13.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 5 CCC.param ? 'X-RAY DIFFRACTION' 6 azmpDRGCNS.PAR ? 'X-RAY DIFFRACTION' 7 gtp.param ? # _struct.entry_id 4NYA _struct.title 'Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NYA _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'fragment-based drug discovery, riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 3 ? T N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 10 A G 11 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A U 79 "O3'" ? ? ? 1_555 A CCC 80 P ? ? A U 88 A CCC 89 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 10 B G 11 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale4 covale both ? B U 79 "O3'" ? ? ? 1_555 B CCC 80 P ? ? B U 88 B CCC 89 1_555 ? ? ? ? ? ? ? 1.600 ? ? metalc1 metalc ? ? A G 31 "O2'" ? ? ? 1_555 K MG . MG ? ? A G 40 A MG 109 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc2 metalc ? ? A C 46 "O3'" ? ? ? 1_555 C MG . MG ? ? A C 55 A MG 101 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc3 metalc ? ? A G 51 O6 ? ? ? 1_555 I MG . MG ? ? A G 60 A MG 107 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc4 metalc ? ? A C 54 OP1 ? ? ? 1_555 D MG . MG ? ? A C 63 A MG 102 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc5 metalc ? ? A C 68 OP1 ? ? ? 1_555 E MG . MG ? ? A C 77 A MG 103 1_555 ? ? ? ? ? ? ? 2.878 ? ? metalc6 metalc ? ? A C 68 "O2'" ? ? ? 1_555 J MG . MG ? ? A C 77 A MG 108 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc7 metalc ? ? A G 69 OP1 ? ? ? 1_555 J MG . MG ? ? A G 78 A MG 108 1_555 ? ? ? ? ? ? ? 2.909 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 T HOH . O ? ? A MG 104 A HOH 201 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc9 metalc ? ? B A 52 OP1 ? ? ? 1_555 Q MG . MG ? ? B A 61 B MG 105 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc10 metalc ? ? B C 54 "O4'" ? ? ? 1_555 Q MG . MG ? ? B C 63 B MG 105 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc11 metalc ? ? B U 55 "O5'" ? ? ? 1_555 P MG . MG ? ? B U 64 B MG 104 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc12 metalc ? ? B U 55 OP2 ? ? ? 1_555 P MG . MG ? ? B U 64 B MG 104 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc13 metalc ? ? B G 56 OP2 ? ? ? 1_555 P MG . MG ? ? B G 65 B MG 104 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc14 metalc ? ? B U 59 O4 ? ? ? 1_555 O MG . MG ? ? B U 68 B MG 103 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc15 metalc ? ? B U 78 O4 ? ? ? 1_555 R MG . MG ? ? B U 87 B MG 106 1_555 ? ? ? ? ? ? ? 2.796 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A CCC 80 N3 ? ? A GTP 10 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A CCC 80 O2 ? ? A GTP 10 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A CCC 80 N4 ? ? A GTP 10 A CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 79 O2 ? ? A G 11 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 79 N3 ? ? A G 11 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 78 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 78 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 77 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 77 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 77 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 76 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 76 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 N2 ? ? ? 1_555 A A 75 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 47 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 33 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog28 hydrog ? ? A G 10 N3 ? ? ? 1_555 A G 33 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog29 hydrog ? ? A G 10 N1 ? ? ? 1_555 A A 38 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A A 38 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 12 N2 ? ? ? 1_555 A U 62 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 N3 ? ? A C 24 A G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog44 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 25 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 25 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 26 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 26 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 27 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 23 O4 ? ? A U 28 A U 32 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog52 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 28 A U 32 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog53 hydrog ? ? A U 19 O4 ? ? ? 1_555 A G 24 N1 ? ? A U 28 A G 33 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog54 hydrog ? ? A G 20 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 29 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 20 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 29 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 20 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 29 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 20 N1 ? ? A C 30 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 20 O6 ? ? A C 30 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 20 N2 ? ? A C 30 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 28 N2 ? ? ? 1_555 A A 60 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 34 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog62 hydrog ? ? A U 30 O2 ? ? ? 1_555 A A 34 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog63 hydrog ? ? A A 44 N7 ? ? ? 1_555 A A 75 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog64 hydrog ? ? A A 47 N6 ? ? ? 1_555 A G 74 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog65 hydrog ? ? A A 47 N7 ? ? ? 1_555 A G 74 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog66 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 72 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 72 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 72 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 51 N1 ? ? ? 1_555 A G 69 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog75 hydrog ? ? A G 51 N2 ? ? ? 1_555 A G 69 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog76 hydrog ? ? A A 52 N6 ? ? ? 1_555 A C 68 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog77 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 56 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 56 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 56 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B CCC 80 N3 ? ? B GTP 10 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B CCC 80 O2 ? ? B GTP 10 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B CCC 80 N4 ? ? B GTP 10 B CCC 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 2 N1 ? ? ? 1_555 B U 79 O2 ? ? B G 11 B U 88 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog92 hydrog ? ? B G 2 N1 ? ? ? 1_555 B CCC 80 O2 ? ? B G 11 B CCC 89 1_555 ? ? ? ? ? ? 'G-CCC PAIR' ? ? ? hydrog93 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 77 N1 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 77 O6 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 77 N2 ? ? B C 13 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 42 N1 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 42 O6 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 42 N2 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 16 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 7 N2 ? ? ? 1_555 B A 75 N3 ? ? B G 16 B A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog103 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 17 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 8 N2 ? ? ? 1_555 B A 47 N3 ? ? B G 17 B A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog107 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 18 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 33 N3 ? ? B G 19 B G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog111 hydrog ? ? B G 10 N3 ? ? ? 1_555 B G 33 N2 ? ? B G 19 B G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog112 hydrog ? ? B G 10 N1 ? ? ? 1_555 B A 38 N1 ? ? B G 19 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog113 hydrog ? ? B G 10 O6 ? ? ? 1_555 B A 38 N6 ? ? B G 19 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog114 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 36 N1 ? ? B U 20 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 36 N6 ? ? B U 20 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 21 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 12 N2 ? ? ? 1_555 B U 62 O2 ? ? B G 21 B U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog120 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 22 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 22 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 22 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 23 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 23 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 23 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 28 N3 ? ? B C 24 B G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog127 hydrog ? ? B U 16 N3 ? ? ? 1_555 B A 26 N1 ? ? B U 25 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B U 16 O4 ? ? ? 1_555 B A 26 N6 ? ? B U 25 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 25 N1 ? ? B U 26 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 25 N6 ? ? B U 26 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 27 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 27 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 27 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B G 28 N2 ? ? ? 1_555 B A 60 N1 ? ? B G 37 B A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog135 hydrog ? ? B U 30 N3 ? ? ? 1_555 B A 34 N7 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog136 hydrog ? ? B U 30 O2 ? ? ? 1_555 B A 34 N6 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog137 hydrog ? ? B A 44 N7 ? ? ? 1_555 B A 75 N6 ? ? B A 53 B A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog138 hydrog ? ? B A 47 N6 ? ? ? 1_555 B G 74 N3 ? ? B A 56 B G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog139 hydrog ? ? B A 47 N7 ? ? ? 1_555 B G 74 N2 ? ? B A 56 B G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog140 hydrog ? ? B C 48 N3 ? ? ? 1_555 B G 73 N1 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B C 48 N4 ? ? ? 1_555 B G 73 O6 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B C 48 O2 ? ? ? 1_555 B G 73 N2 ? ? B C 57 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B C 49 N3 ? ? ? 1_555 B G 72 N1 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B C 49 N4 ? ? ? 1_555 B G 72 O6 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B C 49 O2 ? ? ? 1_555 B G 72 N2 ? ? B C 58 B G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B U 50 N3 ? ? ? 1_555 B A 71 N1 ? ? B U 59 B A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B U 50 O4 ? ? ? 1_555 B A 71 N6 ? ? B U 59 B A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B G 51 N1 ? ? ? 1_555 B G 69 O6 ? ? B G 60 B G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog149 hydrog ? ? B G 51 N2 ? ? ? 1_555 B G 69 N7 ? ? B G 60 B G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog150 hydrog ? ? B A 52 N6 ? ? ? 1_555 B C 68 O2 ? ? B A 61 B C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog151 hydrog ? ? B C 54 N3 ? ? ? 1_555 B G 67 N1 ? ? B C 63 B G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B C 54 N4 ? ? ? 1_555 B G 67 O6 ? ? B C 63 B G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B C 54 O2 ? ? ? 1_555 B G 67 N2 ? ? B C 63 B G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B U 55 N3 ? ? ? 1_555 B A 66 N1 ? ? B U 64 B A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? B U 55 O4 ? ? ? 1_555 B A 66 N6 ? ? B U 64 B A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? B G 56 N1 ? ? ? 1_555 B C 65 N3 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? B G 56 N2 ? ? ? 1_555 B C 65 O2 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? B G 56 O6 ? ? ? 1_555 B C 65 N4 ? ? B G 65 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? B G 57 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? B G 57 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? B G 57 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 66 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 2 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software A MG 102 ? 3 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MG 103 ? 3 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A MG 104 ? 3 'BINDING SITE FOR RESIDUE MG A 104' AC5 Software A MG 105 ? 2 'BINDING SITE FOR RESIDUE MG A 105' AC6 Software A MG 106 ? 1 'BINDING SITE FOR RESIDUE MG A 106' AC7 Software A MG 107 ? 4 'BINDING SITE FOR RESIDUE MG A 107' AC8 Software A MG 108 ? 3 'BINDING SITE FOR RESIDUE MG A 108' AC9 Software A MG 109 ? 1 'BINDING SITE FOR RESIDUE MG A 109' BC1 Software A 2QB 110 ? 4 'BINDING SITE FOR RESIDUE 2QB A 110' BC2 Software B MG 101 ? 2 'BINDING SITE FOR RESIDUE MG B 101' BC3 Software B MG 102 ? 2 'BINDING SITE FOR RESIDUE MG B 102' BC4 Software B MG 103 ? 1 'BINDING SITE FOR RESIDUE MG B 103' BC5 Software B MG 104 ? 2 'BINDING SITE FOR RESIDUE MG B 104' BC6 Software B MG 105 ? 2 'BINDING SITE FOR RESIDUE MG B 105' BC7 Software B MG 106 ? 2 'BINDING SITE FOR RESIDUE MG B 106' BC8 Software B 2QB 107 ? 5 'BINDING SITE FOR RESIDUE 2QB B 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 C A 46 ? C A 55 . ? 1_555 ? 2 AC1 2 A A 47 ? A A 56 . ? 1_555 ? 3 AC2 3 U A 53 ? U A 62 . ? 1_555 ? 4 AC2 3 C A 54 ? C A 63 . ? 1_555 ? 5 AC2 3 U A 55 ? U A 64 . ? 1_555 ? 6 AC3 3 C A 68 ? C A 77 . ? 1_555 ? 7 AC3 3 G A 69 ? G A 78 . ? 1_555 ? 8 AC3 3 U A 70 ? U A 79 . ? 1_555 ? 9 AC4 3 G A 28 ? G A 37 . ? 1_555 ? 10 AC4 3 G A 31 ? G A 40 . ? 2_557 ? 11 AC4 3 HOH T . ? HOH A 201 . ? 1_555 ? 12 AC5 2 G A 72 ? G A 81 . ? 1_555 ? 13 AC5 2 G A 73 ? G A 82 . ? 1_555 ? 14 AC6 1 GTP A 1 ? GTP A 10 . ? 1_555 ? 15 AC7 4 U A 50 ? U A 59 . ? 1_555 ? 16 AC7 4 G A 51 ? G A 60 . ? 1_555 ? 17 AC7 4 G A 63 ? G A 72 . ? 1_555 ? 18 AC7 4 G A 69 ? G A 78 . ? 1_555 ? 19 AC8 3 G A 51 ? G A 60 . ? 1_555 ? 20 AC8 3 C A 68 ? C A 77 . ? 1_555 ? 21 AC8 3 G A 69 ? G A 78 . ? 1_555 ? 22 AC9 1 G A 31 ? G A 40 . ? 1_555 ? 23 BC1 4 G A 10 ? G A 19 . ? 1_555 ? 24 BC1 4 G A 31 ? G A 40 . ? 1_555 ? 25 BC1 4 G A 33 ? G A 42 . ? 1_555 ? 26 BC1 4 A A 34 ? A A 43 . ? 1_555 ? 27 BC2 2 C B 49 ? C B 58 . ? 1_555 ? 28 BC2 2 G B 73 ? G B 82 . ? 1_555 ? 29 BC3 2 U B 70 ? U B 79 . ? 1_555 ? 30 BC3 2 A B 71 ? A B 80 . ? 1_555 ? 31 BC4 1 U B 59 ? U B 68 . ? 1_555 ? 32 BC5 2 U B 55 ? U B 64 . ? 1_555 ? 33 BC5 2 G B 56 ? G B 65 . ? 1_555 ? 34 BC6 2 A B 52 ? A B 61 . ? 1_555 ? 35 BC6 2 C B 54 ? C B 63 . ? 1_555 ? 36 BC7 2 U B 78 ? U B 87 . ? 1_555 ? 37 BC7 2 U B 79 ? U B 88 . ? 1_555 ? 38 BC8 5 G B 10 ? G B 19 . ? 1_555 ? 39 BC8 5 G B 31 ? G B 40 . ? 1_555 ? 40 BC8 5 G B 33 ? G B 42 . ? 1_555 ? 41 BC8 5 A B 34 ? A B 43 . ? 1_555 ? 42 BC8 5 G B 63 ? G B 72 . ? 1_555 ? # _atom_sites.entry_id 4NYA _atom_sites.fract_transf_matrix[1][1] 0.006679 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000460 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033456 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010504 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 10 10 GTP GTP A . n A 1 2 G 2 11 11 G G A . n A 1 3 A 3 12 12 A A A . n A 1 4 C 4 13 13 C C A . n A 1 5 U 5 14 14 U U A . n A 1 6 C 6 15 15 C C A . n A 1 7 G 7 16 16 G G A . n A 1 8 G 8 17 17 G G A . n A 1 9 G 9 18 18 G G A . n A 1 10 G 10 19 19 G G A . n A 1 11 U 11 20 20 U U A . n A 1 12 G 12 21 21 G G A . n A 1 13 C 13 22 22 C C A . n A 1 14 C 14 23 23 C C A . n A 1 15 C 15 24 24 C C A . n A 1 16 U 16 25 25 U U A . n A 1 17 U 17 26 26 U U A . n A 1 18 C 18 27 27 C C A . n A 1 19 U 19 28 28 U U A . n A 1 20 G 20 29 29 G G A . n A 1 21 C 21 30 30 C C A . n A 1 22 G 22 31 31 G G A . n A 1 23 U 23 32 32 U U A . n A 1 24 G 24 33 33 G G A . n A 1 25 A 25 34 34 A A A . n A 1 26 A 26 35 35 A A A . n A 1 27 G 27 36 36 G G A . n A 1 28 G 28 37 37 G G A . n A 1 29 C 29 38 38 C C A . n A 1 30 U 30 39 39 U U A . n A 1 31 G 31 40 40 G G A . n A 1 32 A 32 41 41 A A A . n A 1 33 G 33 42 42 G G A . n A 1 34 A 34 43 43 A A A . n A 1 35 A 35 44 44 A A A . n A 1 36 A 36 45 45 A A A . n A 1 37 U 37 46 46 U U A . n A 1 38 A 38 47 47 A A A . n A 1 39 C 39 48 48 C C A . n A 1 40 C 40 49 49 C C A . n A 1 41 C 41 50 50 C C A . n A 1 42 G 42 51 51 G G A . n A 1 43 U 43 52 52 U U A . n A 1 44 A 44 53 53 A A A . n A 1 45 U 45 54 54 U U A . n A 1 46 C 46 55 55 C C A . n A 1 47 A 47 56 56 A A A . n A 1 48 C 48 57 57 C C A . n A 1 49 C 49 58 58 C C A . n A 1 50 U 50 59 59 U U A . n A 1 51 G 51 60 60 G G A . n A 1 52 A 52 61 61 A A A . n A 1 53 U 53 62 62 U U A . n A 1 54 C 54 63 63 C C A . n A 1 55 U 55 64 64 U U A . n A 1 56 G 56 65 65 G G A . n A 1 57 G 57 66 66 G G A . n A 1 58 A 58 67 67 A A A . n A 1 59 U 59 68 68 U U A . n A 1 60 A 60 69 69 A A A . n A 1 61 A 61 70 70 A A A . n A 1 62 U 62 71 71 U U A . n A 1 63 G 63 72 72 G G A . n A 1 64 C 64 73 73 C C A . n A 1 65 C 65 74 74 C C A . n A 1 66 A 66 75 75 A A A . n A 1 67 G 67 76 76 G G A . n A 1 68 C 68 77 77 C C A . n A 1 69 G 69 78 78 G G A . n A 1 70 U 70 79 79 U U A . n A 1 71 A 71 80 80 A A A . n A 1 72 G 72 81 81 G G A . n A 1 73 G 73 82 82 G G A . n A 1 74 G 74 83 83 G G A . n A 1 75 A 75 84 84 A A A . n A 1 76 A 76 85 85 A A A . n A 1 77 G 77 86 86 G G A . n A 1 78 U 78 87 87 U U A . n A 1 79 U 79 88 88 U U A . n A 1 80 CCC 80 89 89 CCC CCC A . n B 1 1 GTP 1 10 10 GTP GTP B . n B 1 2 G 2 11 11 G G B . n B 1 3 A 3 12 12 A A B . n B 1 4 C 4 13 13 C C B . n B 1 5 U 5 14 14 U U B . n B 1 6 C 6 15 15 C C B . n B 1 7 G 7 16 16 G G B . n B 1 8 G 8 17 17 G G B . n B 1 9 G 9 18 18 G G B . n B 1 10 G 10 19 19 G G B . n B 1 11 U 11 20 20 U U B . n B 1 12 G 12 21 21 G G B . n B 1 13 C 13 22 22 C C B . n B 1 14 C 14 23 23 C C B . n B 1 15 C 15 24 24 C C B . n B 1 16 U 16 25 25 U U B . n B 1 17 U 17 26 26 U U B . n B 1 18 C 18 27 27 C C B . n B 1 19 U 19 28 28 U U B . n B 1 20 G 20 29 29 G G B . n B 1 21 C 21 30 30 C C B . n B 1 22 G 22 31 31 G G B . n B 1 23 U 23 32 32 U U B . n B 1 24 G 24 33 33 G G B . n B 1 25 A 25 34 34 A A B . n B 1 26 A 26 35 35 A A B . n B 1 27 G 27 36 36 G G B . n B 1 28 G 28 37 37 G G B . n B 1 29 C 29 38 38 C C B . n B 1 30 U 30 39 39 U U B . n B 1 31 G 31 40 40 G G B . n B 1 32 A 32 41 41 A A B . n B 1 33 G 33 42 42 G G B . n B 1 34 A 34 43 43 A A B . n B 1 35 A 35 44 44 A A B . n B 1 36 A 36 45 45 A A B . n B 1 37 U 37 46 46 U U B . n B 1 38 A 38 47 47 A A B . n B 1 39 C 39 48 48 C C B . n B 1 40 C 40 49 49 C C B . n B 1 41 C 41 50 50 C C B . n B 1 42 G 42 51 51 G G B . n B 1 43 U 43 52 52 U U B . n B 1 44 A 44 53 53 A A B . n B 1 45 U 45 54 54 U U B . n B 1 46 C 46 55 55 C C B . n B 1 47 A 47 56 56 A A B . n B 1 48 C 48 57 57 C C B . n B 1 49 C 49 58 58 C C B . n B 1 50 U 50 59 59 U U B . n B 1 51 G 51 60 60 G G B . n B 1 52 A 52 61 61 A A B . n B 1 53 U 53 62 62 U U B . n B 1 54 C 54 63 63 C C B . n B 1 55 U 55 64 64 U U B . n B 1 56 G 56 65 65 G G B . n B 1 57 G 57 66 66 G G B . n B 1 58 A 58 67 67 A A B . n B 1 59 U 59 68 68 U U B . n B 1 60 A 60 69 69 A A B . n B 1 61 A 61 70 70 A A B . n B 1 62 U 62 71 71 U U B . n B 1 63 G 63 72 72 G G B . n B 1 64 C 64 73 73 C C B . n B 1 65 C 65 74 74 C C B . n B 1 66 A 66 75 75 A A B . n B 1 67 G 67 76 76 G G B . n B 1 68 C 68 77 77 C C B . n B 1 69 G 69 78 78 G G B . n B 1 70 U 70 79 79 U U B . n B 1 71 A 71 80 80 A A B . n B 1 72 G 72 81 81 G G B . n B 1 73 G 73 82 82 G G B . n B 1 74 G 74 83 83 G G B . n B 1 75 A 75 84 84 A A B . n B 1 76 A 76 85 85 A A B . n B 1 77 G 77 86 86 G G B . n B 1 78 U 78 87 87 U U B . n B 1 79 U 79 88 88 U U B . n B 1 80 CCC 80 89 89 CCC CCC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 308 MG MG2 A . D 2 MG 1 102 310 MG MG2 A . E 2 MG 1 103 301 MG MG2 A . F 2 MG 1 104 303 MG MG2 A . G 2 MG 1 105 304 MG MG2 A . H 2 MG 1 106 305 MG MG2 A . I 2 MG 1 107 306 MG MG2 A . J 2 MG 1 108 315 MG MG2 A . K 2 MG 1 109 319 MG MG2 A . L 3 2QB 1 110 1 2QB 2QB A . M 2 MG 1 101 309 MG MG2 B . N 2 MG 1 102 302 MG MG2 B . O 2 MG 1 103 311 MG MG2 B . P 2 MG 1 104 314 MG MG2 B . Q 2 MG 1 105 316 MG MG2 B . R 2 MG 1 106 318 MG MG2 B . S 3 2QB 1 107 2 2QB 2QB B . T 4 HOH 1 201 312 HOH HOH A . T 4 HOH 2 202 313 HOH HOH A . T 4 HOH 3 203 317 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 10 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 A CCC 80 A CCC 89 ? C ? 3 B GTP 1 B GTP 10 ? G "GUANOSINE-5'-TRIPHOSPHATE" 4 B CCC 80 B CCC 89 ? C ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,T 2 1 B,M,N,O,P,Q,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A C 68 ? A C 77 ? 1_555 MG ? J MG . ? A MG 108 ? 1_555 OP1 ? A G 69 ? A G 78 ? 1_555 94.3 ? 2 OP1 ? B A 52 ? B A 61 ? 1_555 MG ? Q MG . ? B MG 105 ? 1_555 "O4'" ? B C 54 ? B C 63 ? 1_555 118.6 ? 3 "O5'" ? B U 55 ? B U 64 ? 1_555 MG ? P MG . ? B MG 104 ? 1_555 OP2 ? B U 55 ? B U 64 ? 1_555 61.6 ? 4 "O5'" ? B U 55 ? B U 64 ? 1_555 MG ? P MG . ? B MG 104 ? 1_555 OP2 ? B G 56 ? B G 65 ? 1_555 142.0 ? 5 OP2 ? B U 55 ? B U 64 ? 1_555 MG ? P MG . ? B MG 104 ? 1_555 OP2 ? B G 56 ? B G 65 ? 1_555 136.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-04 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.690 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation 0.083 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A C 23 ? ? "C1'" A C 23 ? ? "C2'" A C 23 ? ? 121.96 114.00 7.96 1.30 N 2 1 "C2'" A A 61 ? ? "C3'" A A 61 ? ? "O3'" A A 61 ? ? 126.53 113.70 12.83 1.60 N 3 1 "C2'" A A 85 ? ? "C3'" A A 85 ? ? "O3'" A A 85 ? ? 123.91 113.70 10.21 1.60 N 4 1 "O3'" B GTP 10 ? ? P B G 11 ? ? OP2 B G 11 ? ? 129.52 110.50 19.02 1.10 Y 5 1 "O3'" B GTP 10 ? ? P B G 11 ? ? OP1 B G 11 ? ? 89.71 105.20 -15.49 2.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 28 ? ? 0.071 'SIDE CHAIN' 2 1 G A 40 ? ? 0.058 'SIDE CHAIN' 3 1 G B 78 ? ? 0.048 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 10 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 10 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 10 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 10 ? O3G ? A GTP 1 O3G 5 1 Y 1 A U 46 ? N1 ? A U 37 N1 6 1 Y 1 A U 46 ? C2 ? A U 37 C2 7 1 Y 1 A U 46 ? O2 ? A U 37 O2 8 1 Y 1 A U 46 ? N3 ? A U 37 N3 9 1 Y 1 A U 46 ? C4 ? A U 37 C4 10 1 Y 1 A U 46 ? O4 ? A U 37 O4 11 1 Y 1 A U 46 ? C5 ? A U 37 C5 12 1 Y 1 A U 46 ? C6 ? A U 37 C6 13 1 Y 1 A C 55 ? N1 ? A C 46 N1 14 1 Y 1 A C 55 ? C2 ? A C 46 C2 15 1 Y 1 A C 55 ? O2 ? A C 46 O2 16 1 Y 1 A C 55 ? N3 ? A C 46 N3 17 1 Y 1 A C 55 ? C4 ? A C 46 C4 18 1 Y 1 A C 55 ? N4 ? A C 46 N4 19 1 Y 1 A C 55 ? C5 ? A C 46 C5 20 1 Y 1 A C 55 ? C6 ? A C 46 C6 21 1 Y 1 B U 54 ? N1 ? B U 45 N1 22 1 Y 1 B U 54 ? C2 ? B U 45 C2 23 1 Y 1 B U 54 ? O2 ? B U 45 O2 24 1 Y 1 B U 54 ? N3 ? B U 45 N3 25 1 Y 1 B U 54 ? C4 ? B U 45 C4 26 1 Y 1 B U 54 ? O4 ? B U 45 O4 27 1 Y 1 B U 54 ? C5 ? B U 45 C5 28 1 Y 1 B U 54 ? C6 ? B U 45 C6 29 1 Y 1 B C 55 ? N1 ? B C 46 N1 30 1 Y 1 B C 55 ? C2 ? B C 46 C2 31 1 Y 1 B C 55 ? O2 ? B C 46 O2 32 1 Y 1 B C 55 ? N3 ? B C 46 N3 33 1 Y 1 B C 55 ? C4 ? B C 46 C4 34 1 Y 1 B C 55 ? N4 ? B C 46 N4 35 1 Y 1 B C 55 ? C5 ? B C 46 C5 36 1 Y 1 B C 55 ? C6 ? B C 46 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2QB NAH N N N 1 2QB NAG N N N 2 2QB NAF N N N 3 2QB CAE C N N 4 2QB C5 C Y N 5 2QB C6 C Y N 6 2QB N1 N Y N 7 2QB C2 C Y N 8 2QB CAL C N N 9 2QB N3 N Y N 10 2QB C4 C Y N 11 2QB NAA N N N 12 2QB H2 H N N 13 2QB H3 H N N 14 2QB H4 H N N 15 2QB H5 H N N 16 2QB H6 H N N 17 2QB H7 H N N 18 2QB H8 H N N 19 2QB H9 H N N 20 A OP3 O N N 21 A P P N N 22 A OP1 O N N 23 A OP2 O N N 24 A "O5'" O N N 25 A "C5'" C N N 26 A "C4'" C N R 27 A "O4'" O N N 28 A "C3'" C N S 29 A "O3'" O N N 30 A "C2'" C N R 31 A "O2'" O N N 32 A "C1'" C N R 33 A N9 N Y N 34 A C8 C Y N 35 A N7 N Y N 36 A C5 C Y N 37 A C6 C Y N 38 A N6 N N N 39 A N1 N Y N 40 A C2 C Y N 41 A N3 N Y N 42 A C4 C Y N 43 A HOP3 H N N 44 A HOP2 H N N 45 A "H5'" H N N 46 A "H5''" H N N 47 A "H4'" H N N 48 A "H3'" H N N 49 A "HO3'" H N N 50 A "H2'" H N N 51 A "HO2'" H N N 52 A "H1'" H N N 53 A H8 H N N 54 A H61 H N N 55 A H62 H N N 56 A H2 H N N 57 C OP3 O N N 58 C P P N N 59 C OP1 O N N 60 C OP2 O N N 61 C "O5'" O N N 62 C "C5'" C N N 63 C "C4'" C N R 64 C "O4'" O N N 65 C "C3'" C N S 66 C "O3'" O N N 67 C "C2'" C N R 68 C "O2'" O N N 69 C "C1'" C N R 70 C N1 N N N 71 C C2 C N N 72 C O2 O N N 73 C N3 N N N 74 C C4 C N N 75 C N4 N N N 76 C C5 C N N 77 C C6 C N N 78 C HOP3 H N N 79 C HOP2 H N N 80 C "H5'" H N N 81 C "H5''" H N N 82 C "H4'" H N N 83 C "H3'" H N N 84 C "HO3'" H N N 85 C "H2'" H N N 86 C "HO2'" H N N 87 C "H1'" H N N 88 C H41 H N N 89 C H42 H N N 90 C H5 H N N 91 C H6 H N N 92 CCC PC P N S 93 CCC O1C O N N 94 CCC O2C O N N 95 CCC P P N N 96 CCC OP1 O N N 97 CCC OP2 O N N 98 CCC OP3 O N N 99 CCC "O5'" O N N 100 CCC "C5'" C N N 101 CCC "C4'" C N R 102 CCC "O4'" O N N 103 CCC "C3'" C N R 104 CCC "O3'" O N N 105 CCC "C2'" C N R 106 CCC "O2'" O N N 107 CCC "C1'" C N R 108 CCC N1 N N N 109 CCC C2 C N N 110 CCC O2 O N N 111 CCC N3 N N N 112 CCC C4 C N N 113 CCC N4 N N N 114 CCC C5 C N N 115 CCC C6 C N N 116 CCC HOC2 H N N 117 CCC HOP2 H N N 118 CCC HOP3 H N N 119 CCC "H5'" H N N 120 CCC "H5''" H N N 121 CCC "H4'" H N N 122 CCC "H3'" H N N 123 CCC "H2'" H N N 124 CCC "H1'" H N N 125 CCC H41 H N N 126 CCC H42 H N N 127 CCC H5 H N N 128 CCC H6 H N N 129 G OP3 O N N 130 G P P N N 131 G OP1 O N N 132 G OP2 O N N 133 G "O5'" O N N 134 G "C5'" C N N 135 G "C4'" C N R 136 G "O4'" O N N 137 G "C3'" C N S 138 G "O3'" O N N 139 G "C2'" C N R 140 G "O2'" O N N 141 G "C1'" C N R 142 G N9 N Y N 143 G C8 C Y N 144 G N7 N Y N 145 G C5 C Y N 146 G C6 C N N 147 G O6 O N N 148 G N1 N N N 149 G C2 C N N 150 G N2 N N N 151 G N3 N N N 152 G C4 C Y N 153 G HOP3 H N N 154 G HOP2 H N N 155 G "H5'" H N N 156 G "H5''" H N N 157 G "H4'" H N N 158 G "H3'" H N N 159 G "HO3'" H N N 160 G "H2'" H N N 161 G "HO2'" H N N 162 G "H1'" H N N 163 G H8 H N N 164 G H1 H N N 165 G H21 H N N 166 G H22 H N N 167 GTP PG P N N 168 GTP O1G O N N 169 GTP O2G O N N 170 GTP O3G O N N 171 GTP O3B O N N 172 GTP PB P N N 173 GTP O1B O N N 174 GTP O2B O N N 175 GTP O3A O N N 176 GTP PA P N N 177 GTP O1A O N N 178 GTP O2A O N N 179 GTP "O5'" O N N 180 GTP "C5'" C N N 181 GTP "C4'" C N R 182 GTP "O4'" O N N 183 GTP "C3'" C N S 184 GTP "O3'" O N N 185 GTP "C2'" C N R 186 GTP "O2'" O N N 187 GTP "C1'" C N R 188 GTP N9 N Y N 189 GTP C8 C Y N 190 GTP N7 N Y N 191 GTP C5 C Y N 192 GTP C6 C N N 193 GTP O6 O N N 194 GTP N1 N N N 195 GTP C2 C N N 196 GTP N2 N N N 197 GTP N3 N N N 198 GTP C4 C Y N 199 GTP HOG2 H N N 200 GTP HOG3 H N N 201 GTP HOB2 H N N 202 GTP HOA2 H N N 203 GTP "H5'" H N N 204 GTP "H5''" H N N 205 GTP "H4'" H N N 206 GTP "H3'" H N N 207 GTP "HO3'" H N N 208 GTP "H2'" H N N 209 GTP "HO2'" H N N 210 GTP "H1'" H N N 211 GTP H8 H N N 212 GTP HN1 H N N 213 GTP HN21 H N N 214 GTP HN22 H N N 215 HOH O O N N 216 HOH H1 H N N 217 HOH H2 H N N 218 MG MG MG N N 219 U OP3 O N N 220 U P P N N 221 U OP1 O N N 222 U OP2 O N N 223 U "O5'" O N N 224 U "C5'" C N N 225 U "C4'" C N R 226 U "O4'" O N N 227 U "C3'" C N S 228 U "O3'" O N N 229 U "C2'" C N R 230 U "O2'" O N N 231 U "C1'" C N R 232 U N1 N N N 233 U C2 C N N 234 U O2 O N N 235 U N3 N N N 236 U C4 C N N 237 U O4 O N N 238 U C5 C N N 239 U C6 C N N 240 U HOP3 H N N 241 U HOP2 H N N 242 U "H5'" H N N 243 U "H5''" H N N 244 U "H4'" H N N 245 U "H3'" H N N 246 U "HO3'" H N N 247 U "H2'" H N N 248 U "HO2'" H N N 249 U "H1'" H N N 250 U H3 H N N 251 U H5 H N N 252 U H6 H N N 253 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2QB CAL C2 sing N N 1 2QB N3 C2 doub Y N 2 2QB N3 C4 sing Y N 3 2QB C2 N1 sing Y N 4 2QB NAF NAG doub N N 5 2QB NAF CAE sing N N 6 2QB NAG NAH doub N N 7 2QB C4 NAA sing N N 8 2QB C4 C5 doub Y N 9 2QB N1 C6 doub Y N 10 2QB C5 C6 sing Y N 11 2QB C5 CAE sing N N 12 2QB CAE H2 sing N N 13 2QB CAE H3 sing N N 14 2QB C6 H4 sing N N 15 2QB CAL H5 sing N N 16 2QB CAL H6 sing N N 17 2QB CAL H7 sing N N 18 2QB NAA H8 sing N N 19 2QB NAA H9 sing N N 20 A OP3 P sing N N 21 A OP3 HOP3 sing N N 22 A P OP1 doub N N 23 A P OP2 sing N N 24 A P "O5'" sing N N 25 A OP2 HOP2 sing N N 26 A "O5'" "C5'" sing N N 27 A "C5'" "C4'" sing N N 28 A "C5'" "H5'" sing N N 29 A "C5'" "H5''" sing N N 30 A "C4'" "O4'" sing N N 31 A "C4'" "C3'" sing N N 32 A "C4'" "H4'" sing N N 33 A "O4'" "C1'" sing N N 34 A "C3'" "O3'" sing N N 35 A "C3'" "C2'" sing N N 36 A "C3'" "H3'" sing N N 37 A "O3'" "HO3'" sing N N 38 A "C2'" "O2'" sing N N 39 A "C2'" "C1'" sing N N 40 A "C2'" "H2'" sing N N 41 A "O2'" "HO2'" sing N N 42 A "C1'" N9 sing N N 43 A "C1'" "H1'" sing N N 44 A N9 C8 sing Y N 45 A N9 C4 sing Y N 46 A C8 N7 doub Y N 47 A C8 H8 sing N N 48 A N7 C5 sing Y N 49 A C5 C6 sing Y N 50 A C5 C4 doub Y N 51 A C6 N6 sing N N 52 A C6 N1 doub Y N 53 A N6 H61 sing N N 54 A N6 H62 sing N N 55 A N1 C2 sing Y N 56 A C2 N3 doub Y N 57 A C2 H2 sing N N 58 A N3 C4 sing Y N 59 C OP3 P sing N N 60 C OP3 HOP3 sing N N 61 C P OP1 doub N N 62 C P OP2 sing N N 63 C P "O5'" sing N N 64 C OP2 HOP2 sing N N 65 C "O5'" "C5'" sing N N 66 C "C5'" "C4'" sing N N 67 C "C5'" "H5'" sing N N 68 C "C5'" "H5''" sing N N 69 C "C4'" "O4'" sing N N 70 C "C4'" "C3'" sing N N 71 C "C4'" "H4'" sing N N 72 C "O4'" "C1'" sing N N 73 C "C3'" "O3'" sing N N 74 C "C3'" "C2'" sing N N 75 C "C3'" "H3'" sing N N 76 C "O3'" "HO3'" sing N N 77 C "C2'" "O2'" sing N N 78 C "C2'" "C1'" sing N N 79 C "C2'" "H2'" sing N N 80 C "O2'" "HO2'" sing N N 81 C "C1'" N1 sing N N 82 C "C1'" "H1'" sing N N 83 C N1 C2 sing N N 84 C N1 C6 sing N N 85 C C2 O2 doub N N 86 C C2 N3 sing N N 87 C N3 C4 doub N N 88 C C4 N4 sing N N 89 C C4 C5 sing N N 90 C N4 H41 sing N N 91 C N4 H42 sing N N 92 C C5 C6 doub N N 93 C C5 H5 sing N N 94 C C6 H6 sing N N 95 CCC PC O1C doub N N 96 CCC PC O2C sing N N 97 CCC PC "O3'" sing N N 98 CCC PC "O2'" sing N N 99 CCC O2C HOC2 sing N N 100 CCC P OP1 doub N N 101 CCC P OP2 sing N N 102 CCC P OP3 sing N N 103 CCC P "O5'" sing N N 104 CCC OP2 HOP2 sing N N 105 CCC OP3 HOP3 sing N N 106 CCC "O5'" "C5'" sing N N 107 CCC "C5'" "C4'" sing N N 108 CCC "C5'" "H5'" sing N N 109 CCC "C5'" "H5''" sing N N 110 CCC "C4'" "O4'" sing N N 111 CCC "C4'" "C3'" sing N N 112 CCC "C4'" "H4'" sing N N 113 CCC "O4'" "C1'" sing N N 114 CCC "C3'" "O3'" sing N N 115 CCC "C3'" "C2'" sing N N 116 CCC "C3'" "H3'" sing N N 117 CCC "C2'" "O2'" sing N N 118 CCC "C2'" "C1'" sing N N 119 CCC "C2'" "H2'" sing N N 120 CCC "C1'" N1 sing N N 121 CCC "C1'" "H1'" sing N N 122 CCC N1 C2 sing N N 123 CCC N1 C6 sing N N 124 CCC C2 O2 doub N N 125 CCC C2 N3 sing N N 126 CCC N3 C4 doub N N 127 CCC C4 N4 sing N N 128 CCC C4 C5 sing N N 129 CCC N4 H41 sing N N 130 CCC N4 H42 sing N N 131 CCC C5 C6 doub N N 132 CCC C5 H5 sing N N 133 CCC C6 H6 sing N N 134 G OP3 P sing N N 135 G OP3 HOP3 sing N N 136 G P OP1 doub N N 137 G P OP2 sing N N 138 G P "O5'" sing N N 139 G OP2 HOP2 sing N N 140 G "O5'" "C5'" sing N N 141 G "C5'" "C4'" sing N N 142 G "C5'" "H5'" sing N N 143 G "C5'" "H5''" sing N N 144 G "C4'" "O4'" sing N N 145 G "C4'" "C3'" sing N N 146 G "C4'" "H4'" sing N N 147 G "O4'" "C1'" sing N N 148 G "C3'" "O3'" sing N N 149 G "C3'" "C2'" sing N N 150 G "C3'" "H3'" sing N N 151 G "O3'" "HO3'" sing N N 152 G "C2'" "O2'" sing N N 153 G "C2'" "C1'" sing N N 154 G "C2'" "H2'" sing N N 155 G "O2'" "HO2'" sing N N 156 G "C1'" N9 sing N N 157 G "C1'" "H1'" sing N N 158 G N9 C8 sing Y N 159 G N9 C4 sing Y N 160 G C8 N7 doub Y N 161 G C8 H8 sing N N 162 G N7 C5 sing Y N 163 G C5 C6 sing N N 164 G C5 C4 doub Y N 165 G C6 O6 doub N N 166 G C6 N1 sing N N 167 G N1 C2 sing N N 168 G N1 H1 sing N N 169 G C2 N2 sing N N 170 G C2 N3 doub N N 171 G N2 H21 sing N N 172 G N2 H22 sing N N 173 G N3 C4 sing N N 174 GTP PG O1G doub N N 175 GTP PG O2G sing N N 176 GTP PG O3G sing N N 177 GTP PG O3B sing N N 178 GTP O2G HOG2 sing N N 179 GTP O3G HOG3 sing N N 180 GTP O3B PB sing N N 181 GTP PB O1B doub N N 182 GTP PB O2B sing N N 183 GTP PB O3A sing N N 184 GTP O2B HOB2 sing N N 185 GTP O3A PA sing N N 186 GTP PA O1A doub N N 187 GTP PA O2A sing N N 188 GTP PA "O5'" sing N N 189 GTP O2A HOA2 sing N N 190 GTP "O5'" "C5'" sing N N 191 GTP "C5'" "C4'" sing N N 192 GTP "C5'" "H5'" sing N N 193 GTP "C5'" "H5''" sing N N 194 GTP "C4'" "O4'" sing N N 195 GTP "C4'" "C3'" sing N N 196 GTP "C4'" "H4'" sing N N 197 GTP "O4'" "C1'" sing N N 198 GTP "C3'" "O3'" sing N N 199 GTP "C3'" "C2'" sing N N 200 GTP "C3'" "H3'" sing N N 201 GTP "O3'" "HO3'" sing N N 202 GTP "C2'" "O2'" sing N N 203 GTP "C2'" "C1'" sing N N 204 GTP "C2'" "H2'" sing N N 205 GTP "O2'" "HO2'" sing N N 206 GTP "C1'" N9 sing N N 207 GTP "C1'" "H1'" sing N N 208 GTP N9 C8 sing Y N 209 GTP N9 C4 sing Y N 210 GTP C8 N7 doub Y N 211 GTP C8 H8 sing N N 212 GTP N7 C5 sing Y N 213 GTP C5 C6 sing N N 214 GTP C5 C4 doub Y N 215 GTP C6 O6 doub N N 216 GTP C6 N1 sing N N 217 GTP N1 C2 sing N N 218 GTP N1 HN1 sing N N 219 GTP C2 N2 sing N N 220 GTP C2 N3 doub N N 221 GTP N2 HN21 sing N N 222 GTP N2 HN22 sing N N 223 GTP N3 C4 sing N N 224 HOH O H1 sing N N 225 HOH O H2 sing N N 226 U OP3 P sing N N 227 U OP3 HOP3 sing N N 228 U P OP1 doub N N 229 U P OP2 sing N N 230 U P "O5'" sing N N 231 U OP2 HOP2 sing N N 232 U "O5'" "C5'" sing N N 233 U "C5'" "C4'" sing N N 234 U "C5'" "H5'" sing N N 235 U "C5'" "H5''" sing N N 236 U "C4'" "O4'" sing N N 237 U "C4'" "C3'" sing N N 238 U "C4'" "H4'" sing N N 239 U "O4'" "C1'" sing N N 240 U "C3'" "O3'" sing N N 241 U "C3'" "C2'" sing N N 242 U "C3'" "H3'" sing N N 243 U "O3'" "HO3'" sing N N 244 U "C2'" "O2'" sing N N 245 U "C2'" "C1'" sing N N 246 U "C2'" "H2'" sing N N 247 U "O2'" "HO2'" sing N N 248 U "C1'" N1 sing N N 249 U "C1'" "H1'" sing N N 250 U N1 C2 sing N N 251 U N1 C6 sing N N 252 U C2 O2 doub N N 253 U C2 N3 sing N N 254 U N3 C4 sing N N 255 U N3 H3 sing N N 256 U C4 O4 doub N N 257 U C4 C5 sing N N 258 U C5 C6 doub N N 259 U C5 H5 sing N N 260 U C6 H6 sing N N 261 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NYA 'double helix' 4NYA 'a-form double helix' 4NYA 'hairpin loop' 4NYA 'bulge loop' 4NYA 'mismatched base pair' 4NYA 'internal loop' 4NYA 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 79 1_555 -2.460 -0.440 0.037 -4.828 -10.450 2.087 1 A_G11:U88_A A 11 ? A 88 ? 28 1 1 A A 3 1_555 A U 78 1_555 -0.103 0.274 0.304 -3.329 -12.325 2.443 2 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 4 1_555 A G 77 1_555 -0.001 0.097 0.541 -10.123 -6.618 -1.606 3 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 5 1_555 A A 76 1_555 -0.645 -0.157 -0.138 -7.932 -7.794 -2.437 4 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 6 1_555 A G 42 1_555 -0.682 -0.312 -0.433 6.814 -2.694 -4.629 5 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 7 1_555 A C 41 1_555 -0.274 0.087 0.499 -3.050 -14.355 7.654 6 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 8 1_555 A C 40 1_555 -0.153 0.054 0.204 -13.509 -18.191 4.459 7 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 9 1_555 A C 39 1_555 -0.146 -0.160 0.034 -14.977 -17.385 -6.735 8 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 10 1_555 A A 38 1_555 0.407 1.747 -0.276 5.060 -10.292 -17.702 9 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 11 1_555 A A 36 1_555 0.166 0.011 -0.271 19.256 9.866 2.144 10 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A U 23 1_555 A U 19 1_555 1.505 -1.202 -0.562 25.448 -29.241 174.466 11 A_U32:U28_A A 32 ? A 28 ? 12 2 1 A G 24 1_555 A C 18 1_555 0.160 -0.108 0.030 -3.272 -0.821 -0.594 12 A_G33:C27_A A 33 ? A 27 ? 19 1 1 A A 25 1_555 A U 17 1_555 0.577 -0.374 0.132 5.897 -9.664 0.226 13 A_A34:U26_A A 34 ? A 26 ? 20 1 1 A A 26 1_555 A U 16 1_555 -0.225 -0.040 -0.054 -0.735 -4.354 4.160 14 A_A35:U25_A A 35 ? A 25 ? 20 1 1 A G 27 1_555 A C 14 1_555 -0.294 -0.283 -0.371 -7.390 -3.815 -10.691 15 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 28 1_555 A C 13 1_555 -1.001 -0.280 -0.153 -4.611 -14.256 5.020 16 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 29 1_555 A G 12 1_555 0.133 0.109 0.888 -24.428 3.363 -7.810 17 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 30 1_555 A A 34 1_555 4.341 -2.058 0.595 3.939 8.475 -94.701 18 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A G 20 1_555 B C 21 1_555 0.593 0.148 -0.660 -13.469 7.557 -1.511 19 A_G29:C30_B A 29 ? B 30 ? 19 1 1 A C 21 1_555 B G 20 1_555 -0.505 0.112 -1.000 8.040 3.309 2.679 20 A_C30:G29_B A 30 ? B 29 ? 19 1 1 A A 44 1_555 A A 75 1_555 6.051 -5.422 0.979 -10.832 16.606 167.387 21 A_A53:A84_A A 53 ? A 84 ? ? ? 1 A A 47 1_555 A G 74 1_555 -6.594 -4.374 0.195 15.845 -14.495 -14.836 22 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 48 1_555 A G 73 1_555 0.229 0.076 -0.286 15.637 -21.117 3.200 23 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 49 1_555 A G 72 1_555 -0.220 -0.014 -0.016 -0.502 -20.991 0.642 24 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 50 1_555 A A 71 1_555 -0.168 0.030 -0.281 -3.415 -16.516 -2.929 25 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 51 1_555 A G 69 1_555 1.398 3.138 -0.011 -3.555 3.716 -92.898 26 A_G60:G78_A A 60 ? A 78 ? 6 3 1 A A 52 1_555 A C 68 1_555 -2.854 3.019 0.656 -4.632 -8.012 93.537 27 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 54 1_555 A G 67 1_555 0.083 0.012 -0.204 13.044 -17.853 0.562 28 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 55 1_555 A A 66 1_555 -0.194 0.098 -0.522 8.133 -13.971 -1.072 29 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 56 1_555 A C 65 1_555 0.841 -0.186 -0.148 5.506 -12.950 -0.736 30 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 57 1_555 A C 64 1_555 -0.382 -0.054 0.279 8.427 -7.661 -0.717 31 A_G66:C73_A A 66 ? A 73 ? 19 1 1 B G 2 1_555 B U 79 1_555 -2.607 -0.515 0.475 8.789 -17.727 -2.136 32 B_G11:U88_B B 11 ? B 88 ? 28 1 1 B A 3 1_555 B U 78 1_555 -0.241 0.064 -0.115 -4.000 -28.089 0.501 33 B_A12:U87_B B 12 ? B 87 ? 20 1 1 B C 4 1_555 B G 77 1_555 0.029 0.259 0.893 -12.583 -11.733 -1.570 34 B_C13:G86_B B 13 ? B 86 ? 19 1 1 B C 6 1_555 B G 42 1_555 0.411 0.126 -0.214 9.172 -6.172 -0.604 35 B_C15:G51_B B 15 ? B 51 ? 19 1 1 B G 7 1_555 B C 41 1_555 -0.187 0.029 0.362 5.252 -8.782 3.050 36 B_G16:C50_B B 16 ? B 50 ? 19 1 1 B G 8 1_555 B C 40 1_555 -0.161 -0.196 0.172 -17.404 -23.712 -5.190 37 B_G17:C49_B B 17 ? B 49 ? 19 1 1 B G 9 1_555 B C 39 1_555 -0.709 0.070 0.041 -16.422 -20.438 -5.241 38 B_G18:C48_B B 18 ? B 48 ? 19 1 1 B G 10 1_555 B A 38 1_555 0.494 1.786 -0.471 0.109 -18.064 -23.183 39 B_G19:A47_B B 19 ? B 47 ? 8 1 1 B U 11 1_555 B A 36 1_555 0.877 0.016 -0.577 17.053 -0.684 6.895 40 B_U20:A45_B B 20 ? B 45 ? 20 1 1 B G 24 1_555 B C 18 1_555 -1.159 -0.154 -0.189 -11.306 2.636 -7.254 41 B_G33:C27_B B 33 ? B 27 ? 19 1 1 B A 25 1_555 B U 17 1_555 -0.431 -0.184 0.158 -0.583 3.838 -3.191 42 B_A34:U26_B B 34 ? B 26 ? 20 1 1 B A 26 1_555 B U 16 1_555 -0.057 -0.384 0.023 8.781 9.199 -0.042 43 B_A35:U25_B B 35 ? B 25 ? 20 1 1 B G 27 1_555 B C 14 1_555 -0.925 -0.319 -0.126 -6.408 -8.460 -3.520 44 B_G36:C23_B B 36 ? B 23 ? 19 1 1 B G 28 1_555 B C 13 1_555 -0.630 -0.238 -0.585 -13.882 -21.668 7.986 45 B_G37:C22_B B 37 ? B 22 ? 19 1 1 B C 29 1_555 B G 12 1_555 0.364 0.266 0.501 -11.968 3.387 -0.821 46 B_C38:G21_B B 38 ? B 21 ? 19 1 1 B U 30 1_555 B A 34 1_555 3.831 -2.125 0.887 10.168 19.612 -86.234 47 B_U39:A43_B B 39 ? B 43 ? 24 4 1 B A 44 1_555 B A 75 1_555 6.471 -5.540 -0.261 -16.902 18.791 157.411 48 B_A53:A84_B B 53 ? B 84 ? ? ? 1 B A 47 1_555 B G 74 1_555 -6.893 -4.735 -0.105 12.914 -8.164 -14.009 49 B_A56:G83_B B 56 ? B 83 ? ? 10 1 B C 48 1_555 B G 73 1_555 0.457 -0.124 -0.286 16.563 -17.322 -3.869 50 B_C57:G82_B B 57 ? B 82 ? 19 1 1 B C 49 1_555 B G 72 1_555 -0.148 0.074 -0.163 14.700 -20.340 -0.712 51 B_C58:G81_B B 58 ? B 81 ? 19 1 1 B U 50 1_555 B A 71 1_555 0.124 -0.109 0.562 -7.467 -14.940 -0.568 52 B_U59:A80_B B 59 ? B 80 ? 20 1 1 B G 51 1_555 B G 69 1_555 1.328 3.794 0.683 -18.215 1.021 -85.695 53 B_G60:G78_B B 60 ? B 78 ? 6 3 1 B A 52 1_555 B C 68 1_555 -1.866 3.344 -0.366 14.863 -7.031 107.232 54 B_A61:C77_B B 61 ? B 77 ? ? ? 1 B C 54 1_555 B G 67 1_555 -0.159 -0.204 0.171 10.953 -20.161 -4.279 55 B_C63:G76_B B 63 ? B 76 ? 19 1 1 B U 55 1_555 B A 66 1_555 0.219 -0.312 0.180 0.396 -7.537 -2.120 56 B_U64:A75_B B 64 ? B 75 ? 20 1 1 B G 56 1_555 B C 65 1_555 0.907 -0.036 -0.138 -4.031 -7.324 -5.424 57 B_G65:C74_B B 65 ? B 74 ? 19 1 1 B G 57 1_555 B C 64 1_555 0.145 -0.028 -0.175 -6.985 -2.069 -2.269 58 B_G66:C73_B B 66 ? B 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 79 1_555 A A 3 1_555 A U 78 1_555 -0.176 -1.030 3.314 -4.146 2.928 41.183 -1.768 -0.195 3.239 4.144 5.867 41.481 1 AA_G11A12:U87U88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 3 1_555 A U 78 1_555 A C 4 1_555 A G 77 1_555 -0.241 -1.403 3.460 -1.812 12.131 34.378 -3.913 0.136 2.829 19.761 2.952 36.438 2 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 4 1_555 A G 77 1_555 A U 5 1_555 A A 76 1_555 0.761 -0.978 3.072 11.483 6.385 28.609 -2.948 0.652 2.880 12.145 -21.841 31.425 3 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 5 1_555 A A 76 1_555 A C 6 1_555 A G 42 1_555 1.465 -1.335 3.022 4.443 0.785 30.063 -2.696 -1.947 3.166 1.502 -8.505 30.392 4 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 6 1_555 A G 42 1_555 A G 7 1_555 A C 41 1_555 1.538 -2.134 3.509 -4.123 5.671 33.263 -4.553 -3.286 2.910 9.772 7.105 33.973 5 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 7 1_555 A C 41 1_555 A G 8 1_555 A C 40 1_555 -0.663 -1.977 3.526 1.931 4.702 34.308 -4.063 1.419 3.195 7.917 -3.252 34.671 6 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 8 1_555 A C 40 1_555 A G 9 1_555 A C 39 1_555 -0.708 -1.683 3.310 2.059 8.226 31.250 -4.389 1.613 2.739 14.929 -3.736 32.352 7 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 9 1_555 A C 39 1_555 A G 10 1_555 A A 38 1_555 -0.965 -0.683 2.876 3.446 -1.609 35.850 -0.905 1.985 2.801 -2.604 -5.579 36.045 8 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 10 1_555 A A 38 1_555 A U 11 1_555 A A 36 1_555 -0.008 0.488 3.079 3.259 13.441 7.727 -8.555 2.535 1.918 59.228 -14.362 15.834 9 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A U 23 1_555 A U 19 1_555 A G 24 1_555 A C 18 1_555 0.154 -0.788 2.599 -5.724 -4.766 120.821 -0.418 -0.131 2.611 -2.739 3.290 120.958 10 AA_U32G33:C27U28_AA A 32 ? A 28 ? A 33 ? A 27 ? 1 A G 24 1_555 A C 18 1_555 A A 25 1_555 A U 17 1_555 0.293 -1.539 3.190 -0.268 -1.164 31.486 -2.620 -0.588 3.241 -2.144 0.494 31.508 11 AA_G33A34:U26C27_AA A 33 ? A 27 ? A 34 ? A 26 ? 1 A A 25 1_555 A U 17 1_555 A A 26 1_555 A U 16 1_555 0.718 -1.851 3.416 2.321 4.483 30.399 -4.370 -0.892 3.162 8.476 -4.389 30.806 12 AA_A34A35:U25U26_AA A 34 ? A 26 ? A 35 ? A 25 ? 1 A A 26 1_555 A U 16 1_555 A G 27 1_555 A C 14 1_555 2.206 -1.226 3.312 6.249 6.971 54.390 -1.748 -2.004 3.359 7.563 -6.780 55.130 13 AA_A35G36:C23U25_AA A 35 ? A 25 ? A 36 ? A 23 ? 1 A G 27 1_555 A C 14 1_555 A G 28 1_555 A C 13 1_555 1.081 -1.667 3.373 -3.079 11.346 26.615 -5.602 -2.773 2.343 23.258 6.311 29.053 14 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 28 1_555 A C 13 1_555 A C 29 1_555 A G 12 1_555 -0.610 -1.811 3.780 -6.886 15.843 41.204 -3.964 0.121 2.985 21.414 9.308 44.533 15 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 29 1_555 A G 12 1_555 A U 30 1_555 A A 34 1_555 -2.706 -1.165 2.603 9.206 0.057 71.291 -0.995 2.540 2.285 0.049 -7.866 71.805 16 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A G 20 1_555 B C 21 1_555 A C 21 1_555 B G 20 1_555 -0.242 -2.315 2.977 -0.362 1.912 28.198 -5.134 0.420 2.820 3.918 0.742 28.263 17 AA_G29C30:G29C30_BB A 29 ? B 30 ? A 30 ? B 29 ? 1 A A 44 1_555 A A 75 1_555 A A 47 1_555 A G 74 1_555 -2.506 -1.777 -0.127 147.926 -87.432 18.292 -1.191 0.747 -1.257 -45.463 -76.919 171.937 18 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 47 1_555 A G 74 1_555 A C 48 1_555 A G 73 1_555 1.342 -0.706 3.551 -1.346 11.704 63.743 -1.186 -1.314 3.364 10.984 1.263 64.709 19 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 48 1_555 A G 73 1_555 A C 49 1_555 A G 72 1_555 -0.523 -1.842 3.681 -3.711 8.507 29.996 -5.103 0.228 3.096 15.961 6.964 31.367 20 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 49 1_555 A G 72 1_555 A U 50 1_555 A A 71 1_555 -0.270 -1.020 3.191 1.983 12.289 39.700 -2.655 0.577 2.754 17.578 -2.837 41.531 21 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 50 1_555 A A 71 1_555 A G 51 1_555 A G 69 1_555 2.797 -1.736 3.089 9.191 7.847 90.230 -1.368 -1.788 3.177 5.518 -6.462 90.862 22 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 51 1_555 A G 69 1_555 A A 52 1_555 A C 68 1_555 2.586 1.655 0.612 22.435 -167.183 -165.097 -0.783 1.299 0.774 83.638 11.224 -178.534 23 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 52 1_555 A C 68 1_555 A C 54 1_555 A G 67 1_555 -3.533 -0.405 -1.595 100.259 -139.608 19.655 -1.427 0.892 -1.980 -72.538 -52.093 171.998 24 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 54 1_555 A G 67 1_555 A U 55 1_555 A A 66 1_555 -0.475 -1.606 3.436 1.305 10.172 35.587 -3.878 0.921 2.866 16.231 -2.082 36.989 25 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 55 1_555 A A 66 1_555 A G 56 1_555 A C 65 1_555 -0.441 -1.323 3.521 0.354 9.711 32.946 -3.797 0.803 3.016 16.676 -0.607 34.311 26 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 56 1_555 A C 65 1_555 A G 57 1_555 A C 64 1_555 0.445 -2.138 2.848 -0.937 11.469 26.290 -6.228 -1.056 1.763 23.816 1.946 28.657 27 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? 1 B G 2 1_555 B U 79 1_555 B A 3 1_555 B U 78 1_555 -0.192 -1.188 3.669 3.974 7.002 40.432 -2.514 0.741 3.393 10.012 -5.682 41.193 28 BB_G11A12:U87U88_BB B 11 ? B 88 ? B 12 ? B 87 ? 1 B A 3 1_555 B U 78 1_555 B C 4 1_555 B G 77 1_555 -0.288 -1.145 3.275 -8.208 15.079 35.320 -3.424 -0.503 2.596 23.236 12.648 39.152 29 BB_A12C13:G86U87_BB B 12 ? B 87 ? B 13 ? B 86 ? 1 B C 4 1_555 B G 77 1_555 B C 6 1_555 B G 42 1_555 0.931 -3.251 5.947 10.755 7.179 60.242 -3.785 -0.005 5.642 7.065 -10.584 61.487 30 BB_C13C15:G51G86_BB B 13 ? B 86 ? B 15 ? B 51 ? 1 B C 6 1_555 B G 42 1_555 B G 7 1_555 B C 41 1_555 0.752 -2.622 3.255 -3.992 6.088 25.513 -7.144 -2.574 2.431 13.440 8.814 26.515 31 BB_C15G16:C50G51_BB B 15 ? B 51 ? B 16 ? B 50 ? 1 B G 7 1_555 B C 41 1_555 B G 8 1_555 B C 40 1_555 -0.815 -2.131 3.924 0.270 4.447 31.647 -4.801 1.538 3.592 8.103 -0.492 31.951 32 BB_G16G17:C49C50_BB B 16 ? B 50 ? B 17 ? B 49 ? 1 B G 8 1_555 B C 40 1_555 B G 9 1_555 B C 39 1_555 -0.156 -1.925 3.131 2.528 10.895 28.623 -5.462 0.718 2.243 21.050 -4.883 30.688 33 BB_G17G18:C48C49_BB B 17 ? B 49 ? B 18 ? B 48 ? 1 B G 9 1_555 B C 39 1_555 B G 10 1_555 B A 38 1_555 -1.183 -0.863 2.844 4.338 2.759 38.432 -1.585 2.229 2.634 4.169 -6.554 38.761 34 BB_G18G19:A47C48_BB B 18 ? B 48 ? B 19 ? B 47 ? 1 B G 10 1_555 B A 38 1_555 B U 11 1_555 B A 36 1_555 0.864 1.047 2.990 4.469 8.183 12.954 -2.520 0.323 3.207 31.474 -17.189 15.949 35 BB_G19U20:A45A47_BB B 19 ? B 47 ? B 20 ? B 45 ? 1 B G 24 1_555 B C 18 1_555 B A 25 1_555 B U 17 1_555 0.351 -1.913 3.091 -4.306 0.771 31.593 -3.612 -1.369 2.971 1.408 7.862 31.886 36 BB_G33A34:U26C27_BB B 33 ? B 27 ? B 34 ? B 26 ? 1 B A 25 1_555 B U 17 1_555 B A 26 1_555 B U 16 1_555 0.117 -2.319 3.002 -1.696 -2.051 34.558 -3.598 -0.440 3.121 -3.446 2.850 34.657 37 BB_A34A35:U25U26_BB B 34 ? B 26 ? B 35 ? B 25 ? 1 B A 26 1_555 B U 16 1_555 B G 27 1_555 B C 14 1_555 2.474 -1.485 3.508 2.978 10.002 48.170 -2.571 -2.736 3.294 12.090 -3.599 49.222 38 BB_A35G36:C23U25_BB B 35 ? B 25 ? B 36 ? B 23 ? 1 B G 27 1_555 B C 14 1_555 B G 28 1_555 B C 13 1_555 0.538 -1.907 3.707 2.933 12.766 30.482 -5.563 -0.435 2.749 22.993 -5.283 33.116 39 BB_G36G37:C22C23_BB B 36 ? B 23 ? B 37 ? B 22 ? 1 B G 28 1_555 B C 13 1_555 B C 29 1_555 B G 12 1_555 -0.177 -1.894 3.204 -4.816 10.421 37.802 -3.925 -0.255 2.614 15.649 7.232 39.446 40 BB_G37C38:G21C22_BB B 37 ? B 22 ? B 38 ? B 21 ? 1 B C 29 1_555 B G 12 1_555 B U 30 1_555 B A 34 1_555 -2.625 -0.874 3.051 11.961 11.596 60.231 -1.293 2.999 2.356 11.324 -11.680 62.283 41 BB_C38U39:A43G21_BB B 38 ? B 21 ? B 39 ? B 43 ? 1 B A 44 1_555 B A 75 1_555 B A 47 1_555 B G 74 1_555 -2.421 -2.051 1.072 155.381 -72.054 -132.989 1.139 -0.968 1.514 36.179 78.018 -176.523 42 BB_A53A56:G83A84_BB B 53 ? B 84 ? B 56 ? B 83 ? 1 B A 47 1_555 B G 74 1_555 B C 48 1_555 B G 73 1_555 1.163 -0.609 3.355 1.483 4.819 70.738 -0.696 -0.950 3.333 4.157 -1.280 70.894 43 BB_A56C57:G82G83_BB B 56 ? B 83 ? B 57 ? B 82 ? 1 B C 48 1_555 B G 73 1_555 B C 49 1_555 B G 72 1_555 -0.547 -1.859 3.363 -2.643 3.761 27.185 -4.819 0.503 3.120 7.930 5.572 27.564 44 BB_C57C58:G81G82_BB B 57 ? B 82 ? B 58 ? B 81 ? 1 B C 49 1_555 B G 72 1_555 B U 50 1_555 B A 71 1_555 0.031 -1.345 3.687 -3.068 13.678 40.575 -3.297 -0.369 3.087 19.050 4.272 42.831 45 BB_C58U59:A80G81_BB B 58 ? B 81 ? B 59 ? B 80 ? 1 B U 50 1_555 B A 71 1_555 B G 51 1_555 B G 69 1_555 2.702 -2.069 2.883 12.679 2.582 89.499 -1.508 -1.672 3.116 1.826 -8.966 90.232 46 BB_U59G60:G78A80_BB B 59 ? B 80 ? B 60 ? B 78 ? 1 B G 51 1_555 B G 69 1_555 B A 52 1_555 B C 68 1_555 2.734 1.500 0.841 23.266 -170.369 -134.619 -0.547 1.395 1.206 85.492 11.675 -176.897 47 BB_G60A61:C77G78_BB B 60 ? B 78 ? B 61 ? B 77 ? 1 B A 52 1_555 B C 68 1_555 B C 54 1_555 B G 67 1_555 -2.965 -1.393 -1.245 99.930 -137.551 30.492 -1.371 1.000 -0.922 -71.749 -52.125 170.371 48 BB_A61C63:G76C77_BB B 61 ? B 77 ? B 63 ? B 76 ? 1 B C 54 1_555 B G 67 1_555 B U 55 1_555 B A 66 1_555 -0.402 -1.456 3.429 -3.617 9.755 36.008 -3.549 0.152 2.974 15.389 5.705 37.433 49 BB_C63U64:A75G76_BB B 63 ? B 76 ? B 64 ? B 75 ? 1 B U 55 1_555 B A 66 1_555 B G 56 1_555 B C 65 1_555 -0.525 -1.600 3.155 1.555 12.418 36.453 -3.795 0.967 2.476 19.169 -2.400 38.472 50 BB_U64G65:C74A75_BB B 64 ? B 75 ? B 65 ? B 74 ? 1 B G 56 1_555 B C 65 1_555 B G 57 1_555 B C 64 1_555 0.101 -2.276 3.311 0.662 3.832 29.985 -5.116 -0.063 3.005 7.367 -1.274 30.230 51 BB_G65G66:C73C74_BB B 65 ? B 74 ? B 66 ? B 73 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '5-(azidomethyl)-2-methylpyrimidin-4-amine' 2QB 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GDI _pdbx_initial_refinement_model.details 'PDB ENTRY 2GDI' #