data_4NYB
# 
_entry.id   4NYB 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.379 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4NYB         pdb_00004nyb 10.2210/pdb4nyb/pdb 
NDB   NA2827       ?            ?                   
RCSB  RCSB083808   ?            ?                   
WWPDB D_1000083808 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 4NYA 'Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine' unspecified 
PDB 4NYC 'Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine'              unspecified 
PDB 4NYD 'Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine'                              unspecified 
PDB 4NYG 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine'                                  unspecified 
# 
_pdbx_database_status.entry_id                        4NYB 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.recvd_initial_deposition_date   2013-12-10 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Warner, K.D.'        1 
'Homan, P.'           2 
'Weeks, K.M.'         3 
'Smith, A.G.'         4 
'Abell, C.'           5 
;Ferre-D'Amare, A.R.
;
6 
# 
_citation.id                        primary 
_citation.title                     
'Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically.' 
_citation.journal_abbrev            Chem.Biol. 
_citation.journal_volume            21 
_citation.page_first                591 
_citation.page_last                 595 
_citation.year                      2014 
_citation.journal_id_ASTM           CBOLE2 
_citation.country                   UK 
_citation.journal_id_ISSN           1074-5521 
_citation.journal_id_CSD            2050 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   24768306 
_citation.pdbx_database_id_DOI      10.1016/j.chembiol.2014.03.007 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Warner, K.D.'        1 ? 
primary 'Homan, P.'           2 ? 
primary 'Weeks, K.M.'         3 ? 
primary 'Smith, A.G.'         4 ? 
primary 'Abell, C.'           5 ? 
primary 
;Ferre-D'Amare, A.R.
;
6 ? 
# 
_cell.length_a           65.243 
_cell.length_b           65.243 
_cell.length_c           103.269 
_cell.angle_alpha        90.000 
_cell.angle_beta         90.000 
_cell.angle_gamma        120.000 
_cell.entry_id           4NYB 
_cell.pdbx_unique_axis   ? 
_cell.Z_PDB              6 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.space_group_name_H-M             'P 32 1 2' 
_symmetry.entry_id                         4NYB 
_symmetry.Int_Tables_number                153 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'thiM TPP riboswitch'                            26860.900 1  ? ? ? ? 
2 non-polymer syn '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' 191.253   1  ? ? ? ? 
3 non-polymer syn 'MAGNESIUM ION'                                  24.305    9  ? ? ? ? 
4 non-polymer syn 'MANGANESE (II) ION'                             54.938    4  ? ? ? ? 
5 water       nat water                                            18.015    10 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       
;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC
GC(A23)
;
_entity_poly.pdbx_seq_one_letter_code_can   
;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC
GCA
;
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G   n 
1 2  C   n 
1 3  G   n 
1 4  A   n 
1 5  C   n 
1 6  U   n 
1 7  C   n 
1 8  G   n 
1 9  G   n 
1 10 G   n 
1 11 G   n 
1 12 U   n 
1 13 G   n 
1 14 C   n 
1 15 C   n 
1 16 C   n 
1 17 U   n 
1 18 U   n 
1 19 C   n 
1 20 U   n 
1 21 G   n 
1 22 C   n 
1 23 G   n 
1 24 U   n 
1 25 G   n 
1 26 A   n 
1 27 A   n 
1 28 G   n 
1 29 G   n 
1 30 C   n 
1 31 U   n 
1 32 G   n 
1 33 A   n 
1 34 G   n 
1 35 A   n 
1 36 A   n 
1 37 A   n 
1 38 U   n 
1 39 A   n 
1 40 C   n 
1 41 C   n 
1 42 C   n 
1 43 G   n 
1 44 U   n 
1 45 A   n 
1 46 U   n 
1 47 C   n 
1 48 A   n 
1 49 C   n 
1 50 C   n 
1 51 U   n 
1 52 G   n 
1 53 A   n 
1 54 U   n 
1 55 C   n 
1 56 U   n 
1 57 G   n 
1 58 G   n 
1 59 A   n 
1 60 U   n 
1 61 A   n 
1 62 A   n 
1 63 U   n 
1 64 G   n 
1 65 C   n 
1 66 C   n 
1 67 A   n 
1 68 G   n 
1 69 C   n 
1 70 G   n 
1 71 U   n 
1 72 A   n 
1 73 G   n 
1 74 G   n 
1 75 G   n 
1 76 A   n 
1 77 A   n 
1 78 G   n 
1 79 U   n 
1 80 C   n 
1 81 G   n 
1 82 C   n 
1 83 A23 n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'Escherichia coli' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       562 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4NYB 
_struct_ref.pdbx_db_accession          4NYB 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           1 
_struct_ref.pdbx_seq_one_letter_code   
;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC
GC(A23)
;
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              4NYB 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 83 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             4NYB 
_struct_ref_seq.db_align_beg                  9 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  91 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       9 
_struct_ref_seq.pdbx_auth_seq_align_end       91 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
2QC non-polymer   . '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' ? 'C9 H9 N3 S'       191.253 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"                     ? 'C10 H14 N5 O7 P'  347.221 
A23 'RNA linking' n 
;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
;
? 'C10 H13 N5 O9 P2' 409.186 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"                      ? 'C9 H14 N3 O8 P'   323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"                     ? 'C10 H14 N5 O8 P'  363.221 
HOH non-polymer   . WATER                                            ? 'H2 O'             18.015  
MG  non-polymer   . 'MAGNESIUM ION'                                  ? 'Mg 2'             24.305  
MN  non-polymer   . 'MANGANESE (II) ION'                             ? 'Mn 2'             54.938  
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"                       ? 'C9 H13 N2 O9 P'   324.181 
# 
_exptl.crystals_number   1 
_exptl.entry_id          4NYB 
_exptl.method            'X-RAY DIFFRACTION' 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_Matthews      2.36 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   47.93 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.temp            294 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pdbx_details    
;30% PEG2000, 0.35 M ammonium chloride, 50 mM succinate/KOH, pH 7.0, 10 mM manganese chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 315r' 
_diffrn_detector.pdbx_collection_date   2012-03-06 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.monochromator                    'liquid nitrogen cooled dual crystal Si(111)' 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.0000 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ALS BEAMLINE 5.0.2' 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.0000 
_diffrn_source.pdbx_synchrotron_site       ALS 
_diffrn_source.pdbx_synchrotron_beamline   5.0.2 
# 
_reflns.entry_id                     4NYB 
_reflns.d_resolution_high            3.100 
_reflns.d_resolution_low             30.0 
_reflns.number_obs                   4709 
_reflns.pdbx_Rmerge_I_obs            0.113 
_reflns.pdbx_netI_over_sigmaI        10.1 
_reflns.pdbx_chi_squared             2.517 
_reflns.pdbx_redundancy              4.5 
_reflns.percent_possible_obs         99.1 
_reflns.observed_criterion_sigma_F   ? 
_reflns.observed_criterion_sigma_I   ? 
_reflns.number_all                   ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
loop_
_reflns_shell.d_res_high 
_reflns_shell.d_res_low 
_reflns_shell.number_measured_obs 
_reflns_shell.number_measured_all 
_reflns_shell.number_unique_obs 
_reflns_shell.Rmerge_I_obs 
_reflns_shell.meanI_over_sigI_obs 
_reflns_shell.pdbx_Rsym_value 
_reflns_shell.pdbx_chi_squared 
_reflns_shell.pdbx_redundancy 
_reflns_shell.percent_possible_obs 
_reflns_shell.number_unique_all 
_reflns_shell.percent_possible_all 
_reflns_shell.pdbx_ordinal 
_reflns_shell.pdbx_diffrn_id 
3.100 3.150  ? ? ? 0.577 ? ? 1.063 4.4 ? 222 99.6  1  1 
3.150 3.210  ? ? ? 0.456 ? ? 1.272 4.4 ? 238 100.0 2  1 
3.210 3.270  ? ? ? 0.405 ? ? 1.320 4.6 ? 236 100.0 3  1 
3.270 3.340  ? ? ? 0.341 ? ? 1.331 4.8 ? 234 99.6  4  1 
3.340 3.410  ? ? ? 0.320 ? ? 1.673 4.8 ? 236 100.0 5  1 
3.410 3.490  ? ? ? 0.296 ? ? 1.651 4.9 ? 220 100.0 6  1 
3.490 3.580  ? ? ? 0.266 ? ? 1.767 4.8 ? 239 100.0 7  1 
3.580 3.670  ? ? ? 0.254 ? ? 2.162 4.8 ? 237 100.0 8  1 
3.670 3.780  ? ? ? 0.224 ? ? 2.070 4.8 ? 236 100.0 9  1 
3.780 3.900  ? ? ? 0.194 ? ? 2.458 4.8 ? 237 100.0 10 1 
3.900 4.040  ? ? ? 0.174 ? ? 2.404 4.8 ? 235 99.2  11 1 
4.040 4.210  ? ? ? 0.152 ? ? 2.677 4.7 ? 234 99.2  12 1 
4.210 4.400  ? ? ? 0.134 ? ? 2.926 4.6 ? 234 99.6  13 1 
4.400 4.630  ? ? ? 0.118 ? ? 3.564 4.5 ? 233 99.6  14 1 
4.630 4.920  ? ? ? 0.104 ? ? 3.467 4.5 ? 240 99.2  15 1 
4.920 5.290  ? ? ? 0.086 ? ? 3.377 4.4 ? 229 99.1  16 1 
5.290 5.820  ? ? ? 0.076 ? ? 3.684 4.2 ? 238 98.3  17 1 
5.820 6.660  ? ? ? 0.074 ? ? 3.922 4.2 ? 241 98.4  18 1 
6.660 8.360  ? ? ? 0.064 ? ? 3.938 4.0 ? 242 97.6  19 1 
8.360 30.000 ? ? ? 0.052 ? ? 4.487 3.9 ? 248 94.3  20 1 
# 
_refine.entry_id                                 4NYB 
_refine.ls_d_res_high                            3.100 
_refine.ls_d_res_low                             30.0 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_percent_reflns_obs                    95.7 
_refine.ls_number_reflns_obs                     4526 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.details                                  ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.1883 
_refine.ls_wR_factor_R_work                      ? 
_refine.ls_R_factor_R_free                       0.2488 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_percent_reflns_R_free                 10.1 
_refine.ls_number_reflns_R_free                  477 
_refine.ls_R_factor_R_free_error                 ? 
_refine.B_iso_mean                               82.8093 
_refine.solvent_model_param_bsol                 28.4881 
_refine.solvent_model_param_ksol                 ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.aniso_B[1][1]                            1.0190 
_refine.aniso_B[2][2]                            1.0190 
_refine.aniso_B[3][3]                            -2.0370 
_refine.aniso_B[1][2]                            0.0000 
_refine.aniso_B[1][3]                            0.0000 
_refine.aniso_B[2][3]                            0.0000 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.solvent_model_details                    ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.pdbx_starting_model                      'PDB ENTRY 2HOJ' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.B_iso_max                                147.400 
_refine.B_iso_min                                28.520 
_refine.pdbx_overall_phase_error                 ? 
_refine.occupancy_max                            1.000 
_refine.occupancy_min                            1.000 
_refine.pdbx_ls_sigma_I                          ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   1673 
_refine_hist.pdbx_number_atoms_ligand         26 
_refine_hist.number_atoms_solvent             10 
_refine_hist.number_atoms_total               1709 
_refine_hist.d_res_high                       3.100 
_refine_hist.d_res_low                        30.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.number 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
c_bond_d     ? 0.005 ?     ? ? 'X-RAY DIFFRACTION' 
c_angle_d    ? 1.166 ?     ? ? 'X-RAY DIFFRACTION' 
c_mcbond_it  ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' 
c_scbond_it  ? 1.618 2.000 ? ? 'X-RAY DIFFRACTION' 
c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' 
c_scangle_it ? 2.604 2.500 ? ? 'X-RAY DIFFRACTION' 
# 
loop_
_pdbx_xplor_file.serial_no 
_pdbx_xplor_file.param_file 
_pdbx_xplor_file.topol_file 
_pdbx_xplor_file.pdbx_refine_id 
1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 
2 cycp-dna-rna_rep-12.param    cycp-dna-rna-12.top    'X-RAY DIFFRACTION' 
3 CNS_TOPPAR:water_rep.param   CNS_TOPPAR:water.top   'X-RAY DIFFRACTION' 
4 CNS_TOPPAR:ion.param         CNS_TOPPAR:ion.top     'X-RAY DIFFRACTION' 
5 fiv.par                      fiv.top                'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  4NYB 
_struct.title                     
'Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4NYB 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'fragment-based drug discovery, riboswitch, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 3 ? 
E N N 4 ? 
F N N 3 ? 
G N N 3 ? 
H N N 3 ? 
I N N 3 ? 
J N N 3 ? 
K N N 4 ? 
L N N 3 ? 
M N N 4 ? 
N N N 3 ? 
O N N 4 ? 
P N N 5 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A C   82 "O3'" ? ? ? 1_555 A A23 83 P  ? ? A C   90  A A23 91  1_555 ? ? ? ? ? ? ?                    1.601 
? ? 
metalc1  metalc ?    ? A A   27 OP2   ? ? ? 1_555 J MG  .  MG ? ? A A   35  A MG  109 1_555 ? ? ? ? ? ? ?                    2.818 
? ? 
metalc2  metalc ?    ? A C   30 O2    ? ? ? 1_555 C MG  .  MG ? ? A C   38  A MG  102 1_555 ? ? ? ? ? ? ?                    2.762 
? ? 
metalc3  metalc ?    ? A G   32 N7    ? ? ? 1_555 O MN  .  MN ? ? A G   40  A MN  114 1_555 ? ? ? ? ? ? ?                    2.109 
? ? 
metalc4  metalc ?    ? A G   52 O6    ? ? ? 1_555 M MN  .  MN ? ? A G   60  A MN  112 1_555 ? ? ? ? ? ? ?                    1.996 
? ? 
metalc5  metalc ?    ? A C   55 OP1   ? ? ? 1_555 K MN  .  MN ? ? A C   63  A MN  110 1_555 ? ? ? ? ? ? ?                    2.322 
? ? 
metalc6  metalc ?    ? A U   56 OP2   ? ? ? 1_555 K MN  .  MN ? ? A U   64  A MN  110 1_555 ? ? ? ? ? ? ?                    1.989 
? ? 
metalc7  metalc ?    ? A A   59 OP2   ? ? ? 1_555 I MG  .  MG ? ? A A   67  A MG  108 1_555 ? ? ? ? ? ? ?                    2.421 
? ? 
metalc8  metalc ?    ? A A   61 OP1   ? ? ? 1_555 D MG  .  MG ? ? A A   69  A MG  103 1_555 ? ? ? ? ? ? ?                    2.123 
? ? 
metalc9  metalc ?    ? A G   64 O6    ? ? ? 1_555 M MN  .  MN ? ? A G   72  A MN  112 1_555 ? ? ? ? ? ? ?                    2.419 
? ? 
metalc10 metalc ?    ? A G   64 N1    ? ? ? 1_555 M MN  .  MN ? ? A G   72  A MN  112 1_555 ? ? ? ? ? ? ?                    2.616 
? ? 
metalc11 metalc ?    ? A G   70 O6    ? ? ? 1_555 M MN  .  MN ? ? A G   78  A MN  112 1_555 ? ? ? ? ? ? ?                    2.029 
? ? 
metalc12 metalc ?    ? A A23 83 OP1   ? ? ? 1_555 H MG  .  MG ? ? A A23 91  A MG  107 1_555 ? ? ? ? ? ? ?                    2.661 
? ? 
metalc13 metalc ?    ? I MG  .  MG    ? ? ? 1_555 P HOH .  O  ? ? A MG  108 A HOH 204 1_555 ? ? ? ? ? ? ?                    2.469 
? ? 
metalc14 metalc ?    ? J MG  .  MG    ? ? ? 1_555 P HOH .  O  ? ? A MG  109 A HOH 205 1_555 ? ? ? ? ? ? ?                    2.312 
? ? 
metalc15 metalc ?    ? K MN  .  MN    ? ? ? 1_555 P HOH .  O  ? ? A MN  110 A HOH 203 1_555 ? ? ? ? ? ? ?                    2.476 
? ? 
metalc16 metalc ?    ? O MN  .  MN    ? ? ? 1_555 P HOH .  O  ? ? A MN  114 A HOH 206 1_555 ? ? ? ? ? ? ?                    1.839 
? ? 
metalc17 metalc ?    ? O MN  .  MN    ? ? ? 1_555 P HOH .  O  ? ? A MN  114 A HOH 208 1_555 ? ? ? ? ? ? ?                    1.814 
? ? 
metalc18 metalc ?    ? O MN  .  MN    ? ? ? 1_555 P HOH .  O  ? ? A MN  114 A HOH 209 1_555 ? ? ? ? ? ? ?                    2.241 
? ? 
hydrog1  hydrog ?    ? A G   1  N1    ? ? ? 1_555 A C   82 N3 ? ? A G   9   A C   90  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog2  hydrog ?    ? A G   1  N2    ? ? ? 1_555 A C   82 O2 ? ? A G   9   A C   90  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog3  hydrog ?    ? A G   1  O6    ? ? ? 1_555 A C   82 N4 ? ? A G   9   A C   90  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog4  hydrog ?    ? A C   2  N3    ? ? ? 1_555 A G   81 N1 ? ? A C   10  A G   89  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog5  hydrog ?    ? A C   2  N4    ? ? ? 1_555 A G   81 O6 ? ? A C   10  A G   89  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog6  hydrog ?    ? A C   2  O2    ? ? ? 1_555 A G   81 N2 ? ? A C   10  A G   89  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog7  hydrog ?    ? A G   3  N1    ? ? ? 1_555 A C   80 N3 ? ? A G   11  A C   88  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog8  hydrog ?    ? A G   3  N2    ? ? ? 1_555 A C   80 O2 ? ? A G   11  A C   88  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog9  hydrog ?    ? A G   3  O6    ? ? ? 1_555 A C   80 N4 ? ? A G   11  A C   88  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog10 hydrog ?    ? A A   4  N1    ? ? ? 1_555 A U   79 N3 ? ? A A   12  A U   87  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog11 hydrog ?    ? A A   4  N6    ? ? ? 1_555 A U   79 O4 ? ? A A   12  A U   87  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog12 hydrog ?    ? A C   5  N3    ? ? ? 1_555 A G   78 N1 ? ? A C   13  A G   86  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog13 hydrog ?    ? A C   5  N4    ? ? ? 1_555 A G   78 O6 ? ? A C   13  A G   86  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog14 hydrog ?    ? A C   5  O2    ? ? ? 1_555 A G   78 N2 ? ? A C   13  A G   86  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog15 hydrog ?    ? A U   6  N3    ? ? ? 1_555 A A   77 N1 ? ? A U   14  A A   85  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog16 hydrog ?    ? A U   6  O4    ? ? ? 1_555 A A   77 N6 ? ? A U   14  A A   85  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog17 hydrog ?    ? A C   7  N3    ? ? ? 1_555 A G   43 N1 ? ? A C   15  A G   51  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog18 hydrog ?    ? A C   7  N4    ? ? ? 1_555 A G   43 O6 ? ? A C   15  A G   51  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog19 hydrog ?    ? A C   7  O2    ? ? ? 1_555 A G   43 N2 ? ? A C   15  A G   51  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog20 hydrog ?    ? A G   8  N1    ? ? ? 1_555 A C   42 N3 ? ? A G   16  A C   50  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog21 hydrog ?    ? A G   8  N2    ? ? ? 1_555 A C   42 O2 ? ? A G   16  A C   50  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog22 hydrog ?    ? A G   8  O6    ? ? ? 1_555 A C   42 N4 ? ? A G   16  A C   50  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog23 hydrog ?    ? A G   8  N2    ? ? ? 1_555 A A   76 N3 ? ? A G   16  A A   84  1_555 ? ? ? ? ? ? 'G-A MISPAIR'        ?     
? ? 
hydrog24 hydrog ?    ? A G   9  N1    ? ? ? 1_555 A C   41 N3 ? ? A G   17  A C   49  1_555 ? ? ? ? ? ? 'G-C PAIR'           ?     
? ? 
hydrog25 hydrog ?    ? A G   9  N2    ? ? ? 1_555 A A   48 N3 ? ? A G   17  A A   56  1_555 ? ? ? ? ? ? 'G-A MISPAIR'        ?     
? ? 
hydrog26 hydrog ?    ? A G   10 N1    ? ? ? 1_555 A C   40 N3 ? ? A G   18  A C   48  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog27 hydrog ?    ? A G   10 N2    ? ? ? 1_555 A C   40 O2 ? ? A G   18  A C   48  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog28 hydrog ?    ? A G   10 O6    ? ? ? 1_555 A C   40 N4 ? ? A G   18  A C   48  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog29 hydrog ?    ? A G   11 N2    ? ? ? 1_555 A G   34 N3 ? ? A G   19  A G   42  1_555 ? ? ? ? ? ? TYPE_4_PAIR          ?     
? ? 
hydrog30 hydrog ?    ? A G   11 N3    ? ? ? 1_555 A G   34 N2 ? ? A G   19  A G   42  1_555 ? ? ? ? ? ? TYPE_4_PAIR          ?     
? ? 
hydrog31 hydrog ?    ? A G   11 N1    ? ? ? 1_555 A A   39 N1 ? ? A G   19  A A   47  1_555 ? ? ? ? ? ? TYPE_8_PAIR          ?     
? ? 
hydrog32 hydrog ?    ? A G   11 O6    ? ? ? 1_555 A A   39 N6 ? ? A G   19  A A   47  1_555 ? ? ? ? ? ? TYPE_8_PAIR          ?     
? ? 
hydrog33 hydrog ?    ? A U   12 N3    ? ? ? 1_555 A A   37 N1 ? ? A U   20  A A   45  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog34 hydrog ?    ? A U   12 O4    ? ? ? 1_555 A A   37 N6 ? ? A U   20  A A   45  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog35 hydrog ?    ? A G   13 N1    ? ? ? 1_555 A C   30 N3 ? ? A G   21  A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog36 hydrog ?    ? A G   13 N2    ? ? ? 1_555 A C   30 O2 ? ? A G   21  A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog37 hydrog ?    ? A G   13 O6    ? ? ? 1_555 A C   30 N4 ? ? A G   21  A C   38  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog38 hydrog ?    ? A G   13 N2    ? ? ? 1_555 A U   63 O2 ? ? A G   21  A U   71  1_555 ? ? ? ? ? ? 'G-U MISPAIR'        ?     
? ? 
hydrog39 hydrog ?    ? A C   14 N3    ? ? ? 1_555 A G   29 N1 ? ? A C   22  A G   37  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog40 hydrog ?    ? A C   14 N4    ? ? ? 1_555 A G   29 O6 ? ? A C   22  A G   37  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog41 hydrog ?    ? A C   14 O2    ? ? ? 1_555 A G   29 N2 ? ? A C   22  A G   37  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog42 hydrog ?    ? A C   15 N3    ? ? ? 1_555 A G   28 N1 ? ? A C   23  A G   36  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog43 hydrog ?    ? A C   15 N4    ? ? ? 1_555 A G   28 O6 ? ? A C   23  A G   36  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog44 hydrog ?    ? A C   15 O2    ? ? ? 1_555 A G   28 N2 ? ? A C   23  A G   36  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog45 hydrog ?    ? A C   16 O2    ? ? ? 1_555 A A   27 N6 ? ? A C   24  A A   35  1_555 ? ? ? ? ? ? 'C-A MISPAIR'        ?     
? ? 
hydrog46 hydrog ?    ? A U   31 N3    ? ? ? 1_555 A A   35 N7 ? ? A U   39  A A   43  1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ?     
? ? 
hydrog47 hydrog ?    ? A U   31 O2    ? ? ? 1_555 A A   35 N6 ? ? A U   39  A A   43  1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ?     
? ? 
hydrog48 hydrog ?    ? A A   45 N6    ? ? ? 1_555 A A   76 N7 ? ? A A   53  A A   84  1_555 ? ? ? ? ? ? TYPE_2_PAIR          ?     
? ? 
hydrog49 hydrog ?    ? A A   45 N7    ? ? ? 1_555 A A   76 N6 ? ? A A   53  A A   84  1_555 ? ? ? ? ? ? TYPE_2_PAIR          ?     
? ? 
hydrog50 hydrog ?    ? A A   48 N6    ? ? ? 1_555 A G   75 N3 ? ? A A   56  A G   83  1_555 ? ? ? ? ? ? TYPE_11_PAIR         ?     
? ? 
hydrog51 hydrog ?    ? A A   48 N7    ? ? ? 1_555 A G   75 N2 ? ? A A   56  A G   83  1_555 ? ? ? ? ? ? TYPE_11_PAIR         ?     
? ? 
hydrog52 hydrog ?    ? A C   49 N3    ? ? ? 1_555 A G   74 N1 ? ? A C   57  A G   82  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog53 hydrog ?    ? A C   49 N4    ? ? ? 1_555 A G   74 O6 ? ? A C   57  A G   82  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog54 hydrog ?    ? A C   49 O2    ? ? ? 1_555 A G   74 N2 ? ? A C   57  A G   82  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog55 hydrog ?    ? A C   50 N3    ? ? ? 1_555 A G   73 N1 ? ? A C   58  A G   81  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog56 hydrog ?    ? A C   50 N4    ? ? ? 1_555 A G   73 O6 ? ? A C   58  A G   81  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog57 hydrog ?    ? A C   50 O2    ? ? ? 1_555 A G   73 N2 ? ? A C   58  A G   81  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog58 hydrog ?    ? A U   51 N3    ? ? ? 1_555 A A   72 N1 ? ? A U   59  A A   80  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog59 hydrog ?    ? A U   51 O4    ? ? ? 1_555 A A   72 N6 ? ? A U   59  A A   80  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog60 hydrog ?    ? A G   52 N1    ? ? ? 1_555 A G   70 O6 ? ? A G   60  A G   78  1_555 ? ? ? ? ? ? TYPE_6_PAIR          ?     
? ? 
hydrog61 hydrog ?    ? A G   52 N2    ? ? ? 1_555 A G   70 N7 ? ? A G   60  A G   78  1_555 ? ? ? ? ? ? TYPE_6_PAIR          ?     
? ? 
hydrog62 hydrog ?    ? A A   53 N6    ? ? ? 1_555 A C   69 O2 ? ? A A   61  A C   77  1_555 ? ? ? ? ? ? 'A-C MISPAIR'        ?     
? ? 
hydrog63 hydrog ?    ? A C   55 N3    ? ? ? 1_555 A G   68 N1 ? ? A C   63  A G   76  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog64 hydrog ?    ? A C   55 N4    ? ? ? 1_555 A G   68 O6 ? ? A C   63  A G   76  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog65 hydrog ?    ? A C   55 O2    ? ? ? 1_555 A G   68 N2 ? ? A C   63  A G   76  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog66 hydrog ?    ? A U   56 N3    ? ? ? 1_555 A A   67 N1 ? ? A U   64  A A   75  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog67 hydrog ?    ? A U   56 O4    ? ? ? 1_555 A A   67 N6 ? ? A U   64  A A   75  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog68 hydrog ?    ? A G   57 N1    ? ? ? 1_555 A C   66 N3 ? ? A G   65  A C   74  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog69 hydrog ?    ? A G   57 N2    ? ? ? 1_555 A C   66 O2 ? ? A G   65  A C   74  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog70 hydrog ?    ? A G   57 O6    ? ? ? 1_555 A C   66 N4 ? ? A G   65  A C   74  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog71 hydrog ?    ? A G   58 N1    ? ? ? 1_555 A C   65 N3 ? ? A G   66  A C   73  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog72 hydrog ?    ? A G   58 N2    ? ? ? 1_555 A C   65 O2 ? ? A G   66  A C   73  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
hydrog73 hydrog ?    ? A G   58 O6    ? ? ? 1_555 A C   65 N4 ? ? A G   66  A C   73  1_555 ? ? ? ? ? ? WATSON-CRICK         ?     
? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A 2QC 101 ? 7 'BINDING SITE FOR RESIDUE 2QC A 101' 
AC2 Software A MG  102 ? 5 'BINDING SITE FOR RESIDUE MG A 102'  
AC3 Software A MG  103 ? 2 'BINDING SITE FOR RESIDUE MG A 103'  
AC4 Software A MN  104 ? 2 'BINDING SITE FOR RESIDUE MN A 104'  
AC5 Software A MG  105 ? 1 'BINDING SITE FOR RESIDUE MG A 105'  
AC6 Software A MG  106 ? 2 'BINDING SITE FOR RESIDUE MG A 106'  
AC7 Software A MG  107 ? 2 'BINDING SITE FOR RESIDUE MG A 107'  
AC8 Software A MG  108 ? 3 'BINDING SITE FOR RESIDUE MG A 108'  
AC9 Software A MG  109 ? 3 'BINDING SITE FOR RESIDUE MG A 109'  
BC1 Software A MN  110 ? 4 'BINDING SITE FOR RESIDUE MN A 110'  
BC2 Software A MG  111 ? 1 'BINDING SITE FOR RESIDUE MG A 111'  
BC3 Software A MN  112 ? 4 'BINDING SITE FOR RESIDUE MN A 112'  
BC4 Software A MG  113 ? 2 'BINDING SITE FOR RESIDUE MG A 113'  
BC5 Software A MN  114 ? 5 'BINDING SITE FOR RESIDUE MN A 114'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 7 G   A 11 ? G   A 19  . ? 1_555 ? 
2  AC1 7 U   A 31 ? U   A 39  . ? 1_555 ? 
3  AC1 7 G   A 32 ? G   A 40  . ? 1_555 ? 
4  AC1 7 G   A 34 ? G   A 42  . ? 1_555 ? 
5  AC1 7 A   A 35 ? A   A 43  . ? 1_555 ? 
6  AC1 7 C   A 65 ? C   A 73  . ? 1_555 ? 
7  AC1 7 C   A 66 ? C   A 74  . ? 1_555 ? 
8  AC2 5 G   A 13 ? G   A 21  . ? 1_555 ? 
9  AC2 5 C   A 30 ? C   A 38  . ? 1_555 ? 
10 AC2 5 U   A 31 ? U   A 39  . ? 1_555 ? 
11 AC2 5 U   A 63 ? U   A 71  . ? 1_555 ? 
12 AC2 5 C   A 65 ? C   A 73  . ? 1_555 ? 
13 AC3 2 A   A 61 ? A   A 69  . ? 1_555 ? 
14 AC3 2 A23 A 83 ? A23 A 91  . ? 5_554 ? 
15 AC4 2 A   A 72 ? A   A 80  . ? 1_555 ? 
16 AC4 2 G   A 73 ? G   A 81  . ? 1_555 ? 
17 AC5 1 G   A 58 ? G   A 66  . ? 1_555 ? 
18 AC6 2 G   A 10 ? G   A 18  . ? 1_555 ? 
19 AC6 2 HOH P .  ? HOH A 202 . ? 1_555 ? 
20 AC7 2 A   A 61 ? A   A 69  . ? 5_554 ? 
21 AC7 2 A23 A 83 ? A23 A 91  . ? 1_555 ? 
22 AC8 3 G   A 58 ? G   A 66  . ? 4_555 ? 
23 AC8 3 A   A 59 ? A   A 67  . ? 1_555 ? 
24 AC8 3 HOH P .  ? HOH A 204 . ? 1_555 ? 
25 AC9 3 A   A 27 ? A   A 35  . ? 1_555 ? 
26 AC9 3 G   A 28 ? G   A 36  . ? 1_555 ? 
27 AC9 3 HOH P .  ? HOH A 205 . ? 1_555 ? 
28 BC1 4 C   A 55 ? C   A 63  . ? 1_555 ? 
29 BC1 4 U   A 56 ? U   A 64  . ? 1_555 ? 
30 BC1 4 U   A 56 ? U   A 64  . ? 4_555 ? 
31 BC1 4 HOH P .  ? HOH A 203 . ? 1_555 ? 
32 BC2 1 A   A 33 ? A   A 41  . ? 1_555 ? 
33 BC3 4 U   A 51 ? U   A 59  . ? 1_555 ? 
34 BC3 4 G   A 52 ? G   A 60  . ? 1_555 ? 
35 BC3 4 G   A 64 ? G   A 72  . ? 1_555 ? 
36 BC3 4 G   A 70 ? G   A 78  . ? 1_555 ? 
37 BC4 2 A   A 77 ? A   A 85  . ? 1_555 ? 
38 BC4 2 G   A 78 ? G   A 86  . ? 1_555 ? 
39 BC5 5 G   A 32 ? G   A 40  . ? 1_555 ? 
40 BC5 5 HOH P .  ? HOH A 206 . ? 1_555 ? 
41 BC5 5 HOH P .  ? HOH A 207 . ? 1_555 ? 
42 BC5 5 HOH P .  ? HOH A 208 . ? 1_555 ? 
43 BC5 5 HOH P .  ? HOH A 209 . ? 1_555 ? 
# 
_atom_sites.entry_id                    4NYB 
_atom_sites.fract_transf_matrix[1][1]   0.015327 
_atom_sites.fract_transf_matrix[1][2]   0.008849 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.017698 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.009683 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
MN 
N  
O  
P  
S  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G   1  9  9  G   G   A . n 
A 1 2  C   2  10 10 C   C   A . n 
A 1 3  G   3  11 11 G   G   A . n 
A 1 4  A   4  12 12 A   A   A . n 
A 1 5  C   5  13 13 C   C   A . n 
A 1 6  U   6  14 14 U   U   A . n 
A 1 7  C   7  15 15 C   C   A . n 
A 1 8  G   8  16 16 G   G   A . n 
A 1 9  G   9  17 17 G   G   A . n 
A 1 10 G   10 18 18 G   G   A . n 
A 1 11 G   11 19 19 G   G   A . n 
A 1 12 U   12 20 20 U   U   A . n 
A 1 13 G   13 21 21 G   G   A . n 
A 1 14 C   14 22 22 C   C   A . n 
A 1 15 C   15 23 23 C   C   A . n 
A 1 16 C   16 24 24 C   C   A . n 
A 1 17 U   17 25 25 U   U   A . n 
A 1 18 U   18 26 26 U   U   A . n 
A 1 19 C   19 27 ?  ?   ?   A . n 
A 1 20 U   20 28 ?  ?   ?   A . n 
A 1 21 G   21 29 ?  ?   ?   A . n 
A 1 22 C   22 30 30 C   C   A . n 
A 1 23 G   23 31 31 G   G   A . n 
A 1 24 U   24 32 32 U   U   A . n 
A 1 25 G   25 33 33 G   G   A . n 
A 1 26 A   26 34 34 A   A   A . n 
A 1 27 A   27 35 35 A   A   A . n 
A 1 28 G   28 36 36 G   G   A . n 
A 1 29 G   29 37 37 G   G   A . n 
A 1 30 C   30 38 38 C   C   A . n 
A 1 31 U   31 39 39 U   U   A . n 
A 1 32 G   32 40 40 G   G   A . n 
A 1 33 A   33 41 41 A   A   A . n 
A 1 34 G   34 42 42 G   G   A . n 
A 1 35 A   35 43 43 A   A   A . n 
A 1 36 A   36 44 44 A   A   A . n 
A 1 37 A   37 45 45 A   A   A . n 
A 1 38 U   38 46 46 U   U   A . n 
A 1 39 A   39 47 47 A   A   A . n 
A 1 40 C   40 48 48 C   C   A . n 
A 1 41 C   41 49 49 C   C   A . n 
A 1 42 C   42 50 50 C   C   A . n 
A 1 43 G   43 51 51 G   G   A . n 
A 1 44 U   44 52 52 U   U   A . n 
A 1 45 A   45 53 53 A   A   A . n 
A 1 46 U   46 54 54 U   U   A . n 
A 1 47 C   47 55 55 C   C   A . n 
A 1 48 A   48 56 56 A   A   A . n 
A 1 49 C   49 57 57 C   C   A . n 
A 1 50 C   50 58 58 C   C   A . n 
A 1 51 U   51 59 59 U   U   A . n 
A 1 52 G   52 60 60 G   G   A . n 
A 1 53 A   53 61 61 A   A   A . n 
A 1 54 U   54 62 62 U   U   A . n 
A 1 55 C   55 63 63 C   C   A . n 
A 1 56 U   56 64 64 U   U   A . n 
A 1 57 G   57 65 65 G   G   A . n 
A 1 58 G   58 66 66 G   G   A . n 
A 1 59 A   59 67 67 A   A   A . n 
A 1 60 U   60 68 68 U   U   A . n 
A 1 61 A   61 69 69 A   A   A . n 
A 1 62 A   62 70 70 A   A   A . n 
A 1 63 U   63 71 71 U   U   A . n 
A 1 64 G   64 72 72 G   G   A . n 
A 1 65 C   65 73 73 C   C   A . n 
A 1 66 C   66 74 74 C   C   A . n 
A 1 67 A   67 75 75 A   A   A . n 
A 1 68 G   68 76 76 G   G   A . n 
A 1 69 C   69 77 77 C   C   A . n 
A 1 70 G   70 78 78 G   G   A . n 
A 1 71 U   71 79 79 U   U   A . n 
A 1 72 A   72 80 80 A   A   A . n 
A 1 73 G   73 81 81 G   G   A . n 
A 1 74 G   74 82 82 G   G   A . n 
A 1 75 G   75 83 83 G   G   A . n 
A 1 76 A   76 84 84 A   A   A . n 
A 1 77 A   77 85 85 A   A   A . n 
A 1 78 G   78 86 86 G   G   A . n 
A 1 79 U   79 87 87 U   U   A . n 
A 1 80 C   80 88 88 C   C   A . n 
A 1 81 G   81 89 89 G   G   A . n 
A 1 82 C   82 90 90 C   C   A . n 
A 1 83 A23 83 91 91 A23 A23 A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 2QC 1  101 1   2QC FIV A . 
C 3 MG  1  102 113 MG  MG  A . 
D 3 MG  1  103 102 MG  MG  A . 
E 4 MN  1  104 103 MN  MN  A . 
F 3 MG  1  105 104 MG  MG  A . 
G 3 MG  1  106 105 MG  MG  A . 
H 3 MG  1  107 106 MG  MG  A . 
I 3 MG  1  108 107 MG  MG  A . 
J 3 MG  1  109 108 MG  MG  A . 
K 4 MN  1  110 101 MN  MN  A . 
L 3 MG  1  111 109 MG  MG  A . 
M 4 MN  1  112 115 MN  MN  A . 
N 3 MG  1  113 117 MG  MG  A . 
O 4 MN  1  114 124 MN  MN  A . 
P 5 HOH 1  201 110 HOH HOH A . 
P 5 HOH 2  202 111 HOH HOH A . 
P 5 HOH 3  203 112 HOH HOH A . 
P 5 HOH 4  204 116 HOH HOH A . 
P 5 HOH 5  205 121 HOH HOH A . 
P 5 HOH 6  206 118 HOH HOH A . 
P 5 HOH 7  207 119 HOH HOH A . 
P 5 HOH 8  208 120 HOH HOH A . 
P 5 HOH 9  209 122 HOH HOH A . 
P 5 HOH 10 210 123 HOH HOH A . 
# 
_pdbx_struct_mod_residue.id               1 
_pdbx_struct_mod_residue.label_asym_id    A 
_pdbx_struct_mod_residue.label_comp_id    A23 
_pdbx_struct_mod_residue.label_seq_id     83 
_pdbx_struct_mod_residue.auth_asym_id     A 
_pdbx_struct_mod_residue.auth_comp_id     A23 
_pdbx_struct_mod_residue.auth_seq_id      91 
_pdbx_struct_mod_residue.PDB_ins_code     ? 
_pdbx_struct_mod_residue.parent_comp_id   A 
_pdbx_struct_mod_residue.details          ? 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  OP2 ? A A   27 ? A A   35  ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O   ? P HOH .  ? A HOH 205 ? 1_555 102.4 ? 
2  N7  ? A G   32 ? A G   40  ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 206 ? 1_555 78.1  ? 
3  N7  ? A G   32 ? A G   40  ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 208 ? 1_555 113.9 ? 
4  O   ? P HOH .  ? A HOH 206 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 208 ? 1_555 88.6  ? 
5  N7  ? A G   32 ? A G   40  ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 209 ? 1_555 140.9 ? 
6  O   ? P HOH .  ? A HOH 206 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 209 ? 1_555 63.0  ? 
7  O   ? P HOH .  ? A HOH 208 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O   ? P HOH .  ? A HOH 209 ? 1_555 70.7  ? 
8  O6  ? A G   52 ? A G   60  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6  ? A G   64 ? A G   72  ? 1_555 91.7  ? 
9  O6  ? A G   52 ? A G   60  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 N1  ? A G   64 ? A G   72  ? 1_555 129.8 ? 
10 O6  ? A G   64 ? A G   72  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 N1  ? A G   64 ? A G   72  ? 1_555 53.7  ? 
11 O6  ? A G   52 ? A G   60  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6  ? A G   70 ? A G   78  ? 1_555 95.6  ? 
12 O6  ? A G   64 ? A G   72  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6  ? A G   70 ? A G   78  ? 1_555 168.6 ? 
13 N1  ? A G   64 ? A G   72  ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6  ? A G   70 ? A G   78  ? 1_555 115.1 ? 
14 OP1 ? A C   55 ? A C   63  ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 OP2 ? A U   56 ? A U   64  ? 1_555 120.4 ? 
15 OP1 ? A C   55 ? A C   63  ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O   ? P HOH .  ? A HOH 203 ? 1_555 117.1 ? 
16 OP2 ? A U   56 ? A U   64  ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O   ? P HOH .  ? A HOH 203 ? 1_555 119.4 ? 
17 OP2 ? A A   59 ? A A   67  ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O   ? P HOH .  ? A HOH 204 ? 1_555 70.5  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2014-06-04 
2 'Structure model' 1 1 2023-09-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'        
2 2 'Structure model' 'Database references'    
3 2 'Structure model' 'Derived calculations'   
4 2 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' chem_comp_atom                
2 2 'Structure model' chem_comp_bond                
3 2 'Structure model' database_2                    
4 2 'Structure model' pdbx_initial_refinement_model 
5 2 'Structure model' pdbx_struct_conn_angle        
6 2 'Structure model' struct_conn                   
7 2 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_database_2.pdbx_DOI'                        
2  2 'Structure model' '_database_2.pdbx_database_accession'         
3  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
4  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
6  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
7  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
8  2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
9  2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id'  
10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'   
11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 
12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 
13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 
14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
20 2 'Structure model' '_pdbx_struct_conn_angle.value'               
21 2 'Structure model' '_struct_conn.pdbx_dist_value'                
22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
29 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
30 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
31 2 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
32 2 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
33 2 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
34 2 'Structure model' '_struct_site.pdbx_auth_asym_id'              
35 2 'Structure model' '_struct_site.pdbx_auth_comp_id'              
36 2 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_software.pdbx_ordinal 
_software.name 
_software.version 
_software.date 
_software.type 
_software.contact_author 
_software.contact_author_email 
_software.classification 
_software.location 
_software.language 
_software.citation_id 
1 SCALEPACK   .    ?                program 'Zbyszek Otwinowski' hkl@hkl-xray.com         'data scaling'    
http://www.hkl-xray.com/                  ?          ? 
2 CNS         .    ?                package 'Axel T. Brunger'    axel.brunger@yale.edu    refinement        http://cns-online.org/ 
Fortran_77 ? 
3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB                  deposit@deposit.rcsb.org 'data extraction' 
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++        ? 
4 HKL-2000    .    ?                ?       ?                    ?                        'data collection' ? ?          ? 
5 DENZO       .    ?                ?       ?                    ?                        'data reduction'  ? ?          ? 
6 PHASER      .    ?                ?       ?                    ?                        phasing           ? ?          ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 MN A MN  114 ? ? O A HOH 207 ? ? 1.56 
2 1 O  A HOH 206 ? ? O A HOH 209 ? ? 2.16 
# 
loop_
_pdbx_validate_symm_contact.id 
_pdbx_validate_symm_contact.PDB_model_num 
_pdbx_validate_symm_contact.auth_atom_id_1 
_pdbx_validate_symm_contact.auth_asym_id_1 
_pdbx_validate_symm_contact.auth_comp_id_1 
_pdbx_validate_symm_contact.auth_seq_id_1 
_pdbx_validate_symm_contact.PDB_ins_code_1 
_pdbx_validate_symm_contact.label_alt_id_1 
_pdbx_validate_symm_contact.site_symmetry_1 
_pdbx_validate_symm_contact.auth_atom_id_2 
_pdbx_validate_symm_contact.auth_asym_id_2 
_pdbx_validate_symm_contact.auth_comp_id_2 
_pdbx_validate_symm_contact.auth_seq_id_2 
_pdbx_validate_symm_contact.PDB_ins_code_2 
_pdbx_validate_symm_contact.label_alt_id_2 
_pdbx_validate_symm_contact.site_symmetry_2 
_pdbx_validate_symm_contact.dist 
1 1 N1 A G 31 ? ? 1_555 N1 A G 31 ? ? 4_445 2.07 
2 1 O6 A G 31 ? ? 1_555 O6 A G 31 ? ? 4_445 2.09 
# 
_pdbx_validate_rmsd_angle.id                         1 
_pdbx_validate_rmsd_angle.PDB_model_num              1 
_pdbx_validate_rmsd_angle.auth_atom_id_1             N1 
_pdbx_validate_rmsd_angle.auth_asym_id_1             A 
_pdbx_validate_rmsd_angle.auth_comp_id_1             U 
_pdbx_validate_rmsd_angle.auth_seq_id_1              62 
_pdbx_validate_rmsd_angle.PDB_ins_code_1             ? 
_pdbx_validate_rmsd_angle.label_alt_id_1             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_2             "C1'" 
_pdbx_validate_rmsd_angle.auth_asym_id_2             A 
_pdbx_validate_rmsd_angle.auth_comp_id_2             U 
_pdbx_validate_rmsd_angle.auth_seq_id_2              62 
_pdbx_validate_rmsd_angle.PDB_ins_code_2             ? 
_pdbx_validate_rmsd_angle.label_alt_id_2             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_3             "C2'" 
_pdbx_validate_rmsd_angle.auth_asym_id_3             A 
_pdbx_validate_rmsd_angle.auth_comp_id_3             U 
_pdbx_validate_rmsd_angle.auth_seq_id_3              62 
_pdbx_validate_rmsd_angle.PDB_ins_code_3             ? 
_pdbx_validate_rmsd_angle.label_alt_id_3             ? 
_pdbx_validate_rmsd_angle.angle_value                122.50 
_pdbx_validate_rmsd_angle.angle_target_value         114.00 
_pdbx_validate_rmsd_angle.angle_deviation            8.50 
_pdbx_validate_rmsd_angle.angle_standard_deviation   1.30 
_pdbx_validate_rmsd_angle.linker_flag                N 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1  1 Y 1 A U 26 ? "C5'" ? A U 18 "C5'" 
2  1 Y 1 A U 26 ? "C4'" ? A U 18 "C4'" 
3  1 Y 1 A U 26 ? "O4'" ? A U 18 "O4'" 
4  1 Y 1 A U 26 ? "C3'" ? A U 18 "C3'" 
5  1 Y 1 A U 26 ? "O3'" ? A U 18 "O3'" 
6  1 Y 1 A U 26 ? "C2'" ? A U 18 "C2'" 
7  1 Y 1 A U 26 ? "O2'" ? A U 18 "O2'" 
8  1 Y 1 A U 26 ? "C1'" ? A U 18 "C1'" 
9  1 Y 1 A U 26 ? N1    ? A U 18 N1    
10 1 Y 1 A U 26 ? C2    ? A U 18 C2    
11 1 Y 1 A U 26 ? O2    ? A U 18 O2    
12 1 Y 1 A U 26 ? N3    ? A U 18 N3    
13 1 Y 1 A U 26 ? C4    ? A U 18 C4    
14 1 Y 1 A U 26 ? O4    ? A U 18 O4    
15 1 Y 1 A U 26 ? C5    ? A U 18 C5    
16 1 Y 1 A U 26 ? C6    ? A U 18 C6    
17 1 Y 1 A U 54 ? N1    ? A U 46 N1    
18 1 Y 1 A U 54 ? C2    ? A U 46 C2    
19 1 Y 1 A U 54 ? O2    ? A U 46 O2    
20 1 Y 1 A U 54 ? N3    ? A U 46 N3    
21 1 Y 1 A U 54 ? C4    ? A U 46 C4    
22 1 Y 1 A U 54 ? O4    ? A U 46 O4    
23 1 Y 1 A U 54 ? C5    ? A U 46 C5    
24 1 Y 1 A U 54 ? C6    ? A U 46 C6    
25 1 Y 1 A C 55 ? N1    ? A C 47 N1    
26 1 Y 1 A C 55 ? C2    ? A C 47 C2    
27 1 Y 1 A C 55 ? O2    ? A C 47 O2    
28 1 Y 1 A C 55 ? N3    ? A C 47 N3    
29 1 Y 1 A C 55 ? C4    ? A C 47 C4    
30 1 Y 1 A C 55 ? N4    ? A C 47 N4    
31 1 Y 1 A C 55 ? C5    ? A C 47 C5    
32 1 Y 1 A C 55 ? C6    ? A C 47 C6    
33 1 Y 1 A U 79 ? N1    ? A U 71 N1    
34 1 Y 1 A U 79 ? C2    ? A U 71 C2    
35 1 Y 1 A U 79 ? O2    ? A U 71 O2    
36 1 Y 1 A U 79 ? N3    ? A U 71 N3    
37 1 Y 1 A U 79 ? C4    ? A U 71 C4    
38 1 Y 1 A U 79 ? O4    ? A U 71 O4    
39 1 Y 1 A U 79 ? C5    ? A U 71 C5    
40 1 Y 1 A U 79 ? C6    ? A U 71 C6    
# 
loop_
_pdbx_unobs_or_zero_occ_residues.id 
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 
_pdbx_unobs_or_zero_occ_residues.polymer_flag 
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 
_pdbx_unobs_or_zero_occ_residues.auth_asym_id 
_pdbx_unobs_or_zero_occ_residues.auth_comp_id 
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code 
_pdbx_unobs_or_zero_occ_residues.label_asym_id 
_pdbx_unobs_or_zero_occ_residues.label_comp_id 
_pdbx_unobs_or_zero_occ_residues.label_seq_id 
1 1 Y 1 A C 27 ? A C 19 
2 1 Y 1 A U 28 ? A U 20 
3 1 Y 1 A G 29 ? A G 21 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
2QC CAE    C  Y N 1   
2QC CAF    C  Y N 2   
2QC CAK    C  Y N 3   
2QC CAL    C  N N 4   
2QC NAM    N  N N 5   
2QC CAJ    C  Y N 6   
2QC CAI    C  Y N 7   
2QC CAD    C  Y N 8   
2QC CAC    C  Y N 9   
2QC NAB    N  Y N 10  
2QC NAA    N  Y N 11  
2QC SAG    S  Y N 12  
2QC CAH    C  Y N 13  
2QC H1     H  N N 14  
2QC H2     H  N N 15  
2QC H3     H  N N 16  
2QC H4     H  N N 17  
2QC H5     H  N N 18  
2QC H6     H  N N 19  
2QC H8     H  N N 20  
2QC H9     H  N N 21  
2QC H11    H  N N 22  
A   OP3    O  N N 23  
A   P      P  N N 24  
A   OP1    O  N N 25  
A   OP2    O  N N 26  
A   "O5'"  O  N N 27  
A   "C5'"  C  N N 28  
A   "C4'"  C  N R 29  
A   "O4'"  O  N N 30  
A   "C3'"  C  N S 31  
A   "O3'"  O  N N 32  
A   "C2'"  C  N R 33  
A   "O2'"  O  N N 34  
A   "C1'"  C  N R 35  
A   N9     N  Y N 36  
A   C8     C  Y N 37  
A   N7     N  Y N 38  
A   C5     C  Y N 39  
A   C6     C  Y N 40  
A   N6     N  N N 41  
A   N1     N  Y N 42  
A   C2     C  Y N 43  
A   N3     N  Y N 44  
A   C4     C  Y N 45  
A   HOP3   H  N N 46  
A   HOP2   H  N N 47  
A   "H5'"  H  N N 48  
A   "H5''" H  N N 49  
A   "H4'"  H  N N 50  
A   "H3'"  H  N N 51  
A   "HO3'" H  N N 52  
A   "H2'"  H  N N 53  
A   "HO2'" H  N N 54  
A   "H1'"  H  N N 55  
A   H8     H  N N 56  
A   H61    H  N N 57  
A   H62    H  N N 58  
A   H2     H  N N 59  
A23 PC     P  N S 60  
A23 O1C    O  N N 61  
A23 O2C    O  N N 62  
A23 P      P  N N 63  
A23 OP1    O  N N 64  
A23 OP2    O  N N 65  
A23 OP3    O  N N 66  
A23 "O5'"  O  N N 67  
A23 "C5'"  C  N N 68  
A23 "C4'"  C  N R 69  
A23 "O4'"  O  N N 70  
A23 "C3'"  C  N R 71  
A23 "O3'"  O  N N 72  
A23 "C2'"  C  N R 73  
A23 "O2'"  O  N N 74  
A23 "C1'"  C  N R 75  
A23 N9     N  Y N 76  
A23 C8     C  Y N 77  
A23 N7     N  Y N 78  
A23 C5     C  Y N 79  
A23 C6     C  Y N 80  
A23 N6     N  N N 81  
A23 N1     N  Y N 82  
A23 C2     C  Y N 83  
A23 N3     N  Y N 84  
A23 C4     C  Y N 85  
A23 HOC2   H  N N 86  
A23 HOP2   H  N N 87  
A23 HOP3   H  N N 88  
A23 "H5'"  H  N N 89  
A23 "H5''" H  N N 90  
A23 "H4'"  H  N N 91  
A23 "H3'"  H  N N 92  
A23 "H2'"  H  N N 93  
A23 "H1'"  H  N N 94  
A23 H8     H  N N 95  
A23 HN61   H  N N 96  
A23 HN62   H  N N 97  
A23 H2     H  N N 98  
C   OP3    O  N N 99  
C   P      P  N N 100 
C   OP1    O  N N 101 
C   OP2    O  N N 102 
C   "O5'"  O  N N 103 
C   "C5'"  C  N N 104 
C   "C4'"  C  N R 105 
C   "O4'"  O  N N 106 
C   "C3'"  C  N S 107 
C   "O3'"  O  N N 108 
C   "C2'"  C  N R 109 
C   "O2'"  O  N N 110 
C   "C1'"  C  N R 111 
C   N1     N  N N 112 
C   C2     C  N N 113 
C   O2     O  N N 114 
C   N3     N  N N 115 
C   C4     C  N N 116 
C   N4     N  N N 117 
C   C5     C  N N 118 
C   C6     C  N N 119 
C   HOP3   H  N N 120 
C   HOP2   H  N N 121 
C   "H5'"  H  N N 122 
C   "H5''" H  N N 123 
C   "H4'"  H  N N 124 
C   "H3'"  H  N N 125 
C   "HO3'" H  N N 126 
C   "H2'"  H  N N 127 
C   "HO2'" H  N N 128 
C   "H1'"  H  N N 129 
C   H41    H  N N 130 
C   H42    H  N N 131 
C   H5     H  N N 132 
C   H6     H  N N 133 
G   OP3    O  N N 134 
G   P      P  N N 135 
G   OP1    O  N N 136 
G   OP2    O  N N 137 
G   "O5'"  O  N N 138 
G   "C5'"  C  N N 139 
G   "C4'"  C  N R 140 
G   "O4'"  O  N N 141 
G   "C3'"  C  N S 142 
G   "O3'"  O  N N 143 
G   "C2'"  C  N R 144 
G   "O2'"  O  N N 145 
G   "C1'"  C  N R 146 
G   N9     N  Y N 147 
G   C8     C  Y N 148 
G   N7     N  Y N 149 
G   C5     C  Y N 150 
G   C6     C  N N 151 
G   O6     O  N N 152 
G   N1     N  N N 153 
G   C2     C  N N 154 
G   N2     N  N N 155 
G   N3     N  N N 156 
G   C4     C  Y N 157 
G   HOP3   H  N N 158 
G   HOP2   H  N N 159 
G   "H5'"  H  N N 160 
G   "H5''" H  N N 161 
G   "H4'"  H  N N 162 
G   "H3'"  H  N N 163 
G   "HO3'" H  N N 164 
G   "H2'"  H  N N 165 
G   "HO2'" H  N N 166 
G   "H1'"  H  N N 167 
G   H8     H  N N 168 
G   H1     H  N N 169 
G   H21    H  N N 170 
G   H22    H  N N 171 
HOH O      O  N N 172 
HOH H1     H  N N 173 
HOH H2     H  N N 174 
MG  MG     MG N N 175 
MN  MN     MN N N 176 
U   OP3    O  N N 177 
U   P      P  N N 178 
U   OP1    O  N N 179 
U   OP2    O  N N 180 
U   "O5'"  O  N N 181 
U   "C5'"  C  N N 182 
U   "C4'"  C  N R 183 
U   "O4'"  O  N N 184 
U   "C3'"  C  N S 185 
U   "O3'"  O  N N 186 
U   "C2'"  C  N R 187 
U   "O2'"  O  N N 188 
U   "C1'"  C  N R 189 
U   N1     N  N N 190 
U   C2     C  N N 191 
U   O2     O  N N 192 
U   N3     N  N N 193 
U   C4     C  N N 194 
U   O4     O  N N 195 
U   C5     C  N N 196 
U   C6     C  N N 197 
U   HOP3   H  N N 198 
U   HOP2   H  N N 199 
U   "H5'"  H  N N 200 
U   "H5''" H  N N 201 
U   "H4'"  H  N N 202 
U   "H3'"  H  N N 203 
U   "HO3'" H  N N 204 
U   "H2'"  H  N N 205 
U   "HO2'" H  N N 206 
U   "H1'"  H  N N 207 
U   H3     H  N N 208 
U   H5     H  N N 209 
U   H6     H  N N 210 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2QC CAE   CAF    doub Y N 1   
2QC CAE   CAD    sing Y N 2   
2QC CAF   CAK    sing Y N 3   
2QC CAK   CAL    sing N N 4   
2QC CAK   CAJ    doub Y N 5   
2QC CAL   NAM    sing N N 6   
2QC CAJ   CAI    sing Y N 7   
2QC CAI   CAD    doub Y N 8   
2QC CAD   CAC    sing N N 9   
2QC CAC   NAB    sing Y N 10  
2QC CAC   CAH    doub Y N 11  
2QC NAB   NAA    doub Y N 12  
2QC NAA   SAG    sing Y N 13  
2QC SAG   CAH    sing Y N 14  
2QC CAE   H1     sing N N 15  
2QC CAF   H2     sing N N 16  
2QC CAL   H3     sing N N 17  
2QC CAL   H4     sing N N 18  
2QC NAM   H5     sing N N 19  
2QC NAM   H6     sing N N 20  
2QC CAJ   H8     sing N N 21  
2QC CAI   H9     sing N N 22  
2QC CAH   H11    sing N N 23  
A   OP3   P      sing N N 24  
A   OP3   HOP3   sing N N 25  
A   P     OP1    doub N N 26  
A   P     OP2    sing N N 27  
A   P     "O5'"  sing N N 28  
A   OP2   HOP2   sing N N 29  
A   "O5'" "C5'"  sing N N 30  
A   "C5'" "C4'"  sing N N 31  
A   "C5'" "H5'"  sing N N 32  
A   "C5'" "H5''" sing N N 33  
A   "C4'" "O4'"  sing N N 34  
A   "C4'" "C3'"  sing N N 35  
A   "C4'" "H4'"  sing N N 36  
A   "O4'" "C1'"  sing N N 37  
A   "C3'" "O3'"  sing N N 38  
A   "C3'" "C2'"  sing N N 39  
A   "C3'" "H3'"  sing N N 40  
A   "O3'" "HO3'" sing N N 41  
A   "C2'" "O2'"  sing N N 42  
A   "C2'" "C1'"  sing N N 43  
A   "C2'" "H2'"  sing N N 44  
A   "O2'" "HO2'" sing N N 45  
A   "C1'" N9     sing N N 46  
A   "C1'" "H1'"  sing N N 47  
A   N9    C8     sing Y N 48  
A   N9    C4     sing Y N 49  
A   C8    N7     doub Y N 50  
A   C8    H8     sing N N 51  
A   N7    C5     sing Y N 52  
A   C5    C6     sing Y N 53  
A   C5    C4     doub Y N 54  
A   C6    N6     sing N N 55  
A   C6    N1     doub Y N 56  
A   N6    H61    sing N N 57  
A   N6    H62    sing N N 58  
A   N1    C2     sing Y N 59  
A   C2    N3     doub Y N 60  
A   C2    H2     sing N N 61  
A   N3    C4     sing Y N 62  
A23 PC    O1C    doub N N 63  
A23 PC    O2C    sing N N 64  
A23 PC    "O3'"  sing N N 65  
A23 PC    "O2'"  sing N N 66  
A23 O2C   HOC2   sing N N 67  
A23 P     OP1    doub N N 68  
A23 P     OP2    sing N N 69  
A23 P     OP3    sing N N 70  
A23 P     "O5'"  sing N N 71  
A23 OP2   HOP2   sing N N 72  
A23 OP3   HOP3   sing N N 73  
A23 "O5'" "C5'"  sing N N 74  
A23 "C5'" "C4'"  sing N N 75  
A23 "C5'" "H5'"  sing N N 76  
A23 "C5'" "H5''" sing N N 77  
A23 "C4'" "O4'"  sing N N 78  
A23 "C4'" "C3'"  sing N N 79  
A23 "C4'" "H4'"  sing N N 80  
A23 "O4'" "C1'"  sing N N 81  
A23 "C3'" "O3'"  sing N N 82  
A23 "C3'" "C2'"  sing N N 83  
A23 "C3'" "H3'"  sing N N 84  
A23 "C2'" "O2'"  sing N N 85  
A23 "C2'" "C1'"  sing N N 86  
A23 "C2'" "H2'"  sing N N 87  
A23 "C1'" N9     sing N N 88  
A23 "C1'" "H1'"  sing N N 89  
A23 N9    C8     sing Y N 90  
A23 N9    C4     sing Y N 91  
A23 C8    N7     doub Y N 92  
A23 C8    H8     sing N N 93  
A23 N7    C5     sing Y N 94  
A23 C5    C6     sing Y N 95  
A23 C5    C4     doub Y N 96  
A23 C6    N6     sing N N 97  
A23 C6    N1     doub Y N 98  
A23 N6    HN61   sing N N 99  
A23 N6    HN62   sing N N 100 
A23 N1    C2     sing Y N 101 
A23 C2    N3     doub Y N 102 
A23 C2    H2     sing N N 103 
A23 N3    C4     sing Y N 104 
C   OP3   P      sing N N 105 
C   OP3   HOP3   sing N N 106 
C   P     OP1    doub N N 107 
C   P     OP2    sing N N 108 
C   P     "O5'"  sing N N 109 
C   OP2   HOP2   sing N N 110 
C   "O5'" "C5'"  sing N N 111 
C   "C5'" "C4'"  sing N N 112 
C   "C5'" "H5'"  sing N N 113 
C   "C5'" "H5''" sing N N 114 
C   "C4'" "O4'"  sing N N 115 
C   "C4'" "C3'"  sing N N 116 
C   "C4'" "H4'"  sing N N 117 
C   "O4'" "C1'"  sing N N 118 
C   "C3'" "O3'"  sing N N 119 
C   "C3'" "C2'"  sing N N 120 
C   "C3'" "H3'"  sing N N 121 
C   "O3'" "HO3'" sing N N 122 
C   "C2'" "O2'"  sing N N 123 
C   "C2'" "C1'"  sing N N 124 
C   "C2'" "H2'"  sing N N 125 
C   "O2'" "HO2'" sing N N 126 
C   "C1'" N1     sing N N 127 
C   "C1'" "H1'"  sing N N 128 
C   N1    C2     sing N N 129 
C   N1    C6     sing N N 130 
C   C2    O2     doub N N 131 
C   C2    N3     sing N N 132 
C   N3    C4     doub N N 133 
C   C4    N4     sing N N 134 
C   C4    C5     sing N N 135 
C   N4    H41    sing N N 136 
C   N4    H42    sing N N 137 
C   C5    C6     doub N N 138 
C   C5    H5     sing N N 139 
C   C6    H6     sing N N 140 
G   OP3   P      sing N N 141 
G   OP3   HOP3   sing N N 142 
G   P     OP1    doub N N 143 
G   P     OP2    sing N N 144 
G   P     "O5'"  sing N N 145 
G   OP2   HOP2   sing N N 146 
G   "O5'" "C5'"  sing N N 147 
G   "C5'" "C4'"  sing N N 148 
G   "C5'" "H5'"  sing N N 149 
G   "C5'" "H5''" sing N N 150 
G   "C4'" "O4'"  sing N N 151 
G   "C4'" "C3'"  sing N N 152 
G   "C4'" "H4'"  sing N N 153 
G   "O4'" "C1'"  sing N N 154 
G   "C3'" "O3'"  sing N N 155 
G   "C3'" "C2'"  sing N N 156 
G   "C3'" "H3'"  sing N N 157 
G   "O3'" "HO3'" sing N N 158 
G   "C2'" "O2'"  sing N N 159 
G   "C2'" "C1'"  sing N N 160 
G   "C2'" "H2'"  sing N N 161 
G   "O2'" "HO2'" sing N N 162 
G   "C1'" N9     sing N N 163 
G   "C1'" "H1'"  sing N N 164 
G   N9    C8     sing Y N 165 
G   N9    C4     sing Y N 166 
G   C8    N7     doub Y N 167 
G   C8    H8     sing N N 168 
G   N7    C5     sing Y N 169 
G   C5    C6     sing N N 170 
G   C5    C4     doub Y N 171 
G   C6    O6     doub N N 172 
G   C6    N1     sing N N 173 
G   N1    C2     sing N N 174 
G   N1    H1     sing N N 175 
G   C2    N2     sing N N 176 
G   C2    N3     doub N N 177 
G   N2    H21    sing N N 178 
G   N2    H22    sing N N 179 
G   N3    C4     sing N N 180 
HOH O     H1     sing N N 181 
HOH O     H2     sing N N 182 
U   OP3   P      sing N N 183 
U   OP3   HOP3   sing N N 184 
U   P     OP1    doub N N 185 
U   P     OP2    sing N N 186 
U   P     "O5'"  sing N N 187 
U   OP2   HOP2   sing N N 188 
U   "O5'" "C5'"  sing N N 189 
U   "C5'" "C4'"  sing N N 190 
U   "C5'" "H5'"  sing N N 191 
U   "C5'" "H5''" sing N N 192 
U   "C4'" "O4'"  sing N N 193 
U   "C4'" "C3'"  sing N N 194 
U   "C4'" "H4'"  sing N N 195 
U   "O4'" "C1'"  sing N N 196 
U   "C3'" "O3'"  sing N N 197 
U   "C3'" "C2'"  sing N N 198 
U   "C3'" "H3'"  sing N N 199 
U   "O3'" "HO3'" sing N N 200 
U   "C2'" "O2'"  sing N N 201 
U   "C2'" "C1'"  sing N N 202 
U   "C2'" "H2'"  sing N N 203 
U   "O2'" "HO2'" sing N N 204 
U   "C1'" N1     sing N N 205 
U   "C1'" "H1'"  sing N N 206 
U   N1    C2     sing N N 207 
U   N1    C6     sing N N 208 
U   C2    O2     doub N N 209 
U   C2    N3     sing N N 210 
U   N3    C4     sing N N 211 
U   N3    H3     sing N N 212 
U   C4    O4     doub N N 213 
U   C4    C5     sing N N 214 
U   C5    C6     doub N N 215 
U   C5    H5     sing N N 216 
U   C6    H6     sing N N 217 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
4NYB 'double helix'         
4NYB 'a-form double helix'  
4NYB 'hairpin loop'         
4NYB 'bulge loop'           
4NYB 'mismatched base pair' 
4NYB 'internal loop'        
4NYB 'three-way junction'   
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1  1_555 A C 82 1_555 0.389  0.116  0.295  -0.454  -19.442 6.419   1  A_G9:C90_A  A 9  ? A 90 ? 19 1  
1 A C 2  1_555 A G 81 1_555 0.410  -0.254 0.626  -8.843  -13.788 3.862   2  A_C10:G89_A A 10 ? A 89 ? 19 1  
1 A G 3  1_555 A C 80 1_555 -0.169 0.094  -0.112 -4.765  -11.450 4.695   3  A_G11:C88_A A 11 ? A 88 ? 19 1  
1 A A 4  1_555 A U 79 1_555 0.942  -0.068 0.113  2.806   -13.213 -3.434  4  A_A12:U87_A A 12 ? A 87 ? 20 1  
1 A C 5  1_555 A G 78 1_555 0.580  -0.462 0.173  4.623   -18.032 -0.640  5  A_C13:G86_A A 13 ? A 86 ? 19 1  
1 A U 6  1_555 A A 77 1_555 0.111  -0.015 -0.040 -2.519  -15.574 5.835   6  A_U14:A85_A A 14 ? A 85 ? 20 1  
1 A C 7  1_555 A G 43 1_555 -0.386 -0.138 -0.015 10.209  -13.146 2.626   7  A_C15:G51_A A 15 ? A 51 ? 19 1  
1 A G 8  1_555 A C 42 1_555 -0.436 -0.069 0.322  -4.473  -15.153 4.529   8  A_G16:C50_A A 16 ? A 50 ? 19 1  
1 A G 9  1_555 A C 41 1_555 -0.538 0.064  0.648  -13.060 -13.654 8.439   9  A_G17:C49_A A 17 ? A 49 ? ?  1  
1 A G 10 1_555 A C 40 1_555 -0.271 0.014  0.246  -15.173 -24.181 0.678   10 A_G18:C48_A A 18 ? A 48 ? 19 1  
1 A G 11 1_555 A A 39 1_555 -0.524 1.458  -0.061 -3.171  -16.394 -22.788 11 A_G19:A47_A A 19 ? A 47 ? 8  1  
1 A U 12 1_555 A A 37 1_555 -0.343 -0.340 -0.154 18.750  10.117  -0.013  12 A_U20:A45_A A 20 ? A 45 ? 20 1  
1 A A 27 1_555 A C 16 1_555 -4.967 -1.516 -0.313 4.233   -8.617  -7.641  13 A_A35:C24_A A 35 ? A 24 ? ?  ?  
1 A G 28 1_555 A C 15 1_555 0.001  -0.046 0.284  5.071   -7.322  3.677   14 A_G36:C23_A A 36 ? A 23 ? 19 1  
1 A G 29 1_555 A C 14 1_555 -0.454 -0.292 -0.061 -6.390  -5.112  4.028   15 A_G37:C22_A A 37 ? A 22 ? 19 1  
1 A C 30 1_555 A G 13 1_555 0.734  0.059  0.370  -12.172 3.419   -3.862  16 A_C38:G21_A A 38 ? A 21 ? 19 1  
1 A U 31 1_555 A A 35 1_555 4.311  -2.323 0.617  6.526   14.116  -93.258 17 A_U39:A43_A A 39 ? A 43 ? 24 4  
1 A A 45 1_555 A A 76 1_555 5.071  -5.351 -0.306 -23.528 22.625  168.696 18 A_A53:A84_A A 53 ? A 84 ? 2  7  
1 A A 48 1_555 A G 75 1_555 -6.763 -4.418 0.574  14.275  -16.865 -10.227 19 A_A56:G83_A A 56 ? A 83 ? 11 10 
1 A C 49 1_555 A G 74 1_555 0.787  -0.175 0.009  13.207  -12.464 2.703   20 A_C57:G82_A A 57 ? A 82 ? 19 1  
1 A C 50 1_555 A G 73 1_555 1.363  -0.416 -0.239 2.961   -9.136  -8.555  21 A_C58:G81_A A 58 ? A 81 ? 19 1  
1 A U 51 1_555 A A 72 1_555 -0.449 -0.288 0.211  -24.325 -14.061 -4.756  22 A_U59:A80_A A 59 ? A 80 ? 20 1  
1 A G 52 1_555 A G 70 1_555 1.155  3.644  -0.086 -15.231 15.200  -98.735 23 A_G60:G78_A A 60 ? A 78 ? 6  3  
1 A A 53 1_555 A C 69 1_555 -1.816 2.935  -0.086 2.297   -12.567 106.519 24 A_A61:C77_A A 61 ? A 77 ? ?  ?  
1 A C 55 1_555 A G 68 1_555 0.059  0.011  -0.051 9.534   -21.047 6.519   25 A_C63:G76_A A 63 ? A 76 ? 19 1  
1 A U 56 1_555 A A 67 1_555 0.034  -0.233 0.388  -3.846  -10.575 -0.222  26 A_U64:A75_A A 64 ? A 75 ? 20 1  
1 A G 57 1_555 A C 66 1_555 1.354  -0.059 -0.384 -12.363 -12.703 1.718   27 A_G65:C74_A A 65 ? A 74 ? 19 1  
1 A G 58 1_555 A C 65 1_555 0.432  -0.063 -0.121 -8.084  -7.831  -1.069  28 A_G66:C73_A A 66 ? A 73 ? 19 1  
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1  1_555 A C 82 1_555 A C 2  1_555 A G 81 1_555 0.070  -1.173 3.509  -3.444  -0.353   35.793   -1.847 -0.641 3.498  -0.572  
5.587   35.954   1  AA_G9C10:G89C90_AA  A 9  ? A 90 ? A 10 ? A 89 ? 
1 A C 2  1_555 A G 81 1_555 A G 3  1_555 A C 80 1_555 0.113  -1.677 2.958  6.843   8.443    29.397   -4.450 0.878  2.363  15.965  
-12.940 31.300   2  AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 
1 A G 3  1_555 A C 80 1_555 A A 4  1_555 A U 79 1_555 -0.564 -1.368 3.095  -3.054  2.107    32.702   -2.754 0.505  3.042  3.728   
5.402   32.907   3  AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 
1 A A 4  1_555 A U 79 1_555 A C 5  1_555 A G 78 1_555 0.103  -1.321 3.198  -0.794  1.572    35.152   -2.411 -0.286 3.135  2.602   
1.313   35.195   4  AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 
1 A C 5  1_555 A G 78 1_555 A U 6  1_555 A A 77 1_555 0.737  -0.946 3.318  5.736   4.638    31.290   -2.554 -0.289 3.229  8.453   
-10.454 32.127   5  AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 
1 A U 6  1_555 A A 77 1_555 A C 7  1_555 A G 43 1_555 1.365  -0.824 2.876  1.115   6.445    34.999   -2.158 -2.093 2.727  10.602  
-1.834  35.586   6  AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 
1 A C 7  1_555 A G 43 1_555 A G 8  1_555 A C 42 1_555 0.848  -1.794 3.538  -2.472  7.807    32.692   -4.382 -1.871 2.972  13.606  
4.308   33.675   7  AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 
1 A G 8  1_555 A C 42 1_555 A G 9  1_555 A C 41 1_555 -0.126 -1.636 3.353  -0.673  1.284    36.836   -2.764 0.106  3.298  2.032   
1.065   36.863   8  AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 
1 A G 9  1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 0.003  -1.702 3.195  7.576   8.951    30.910   -4.375 1.163  2.547  16.087  
-13.615 33.009   9  AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 
1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.532 -0.946 2.859  2.437   7.999    32.975   -2.673 2.942  2.453  13.818  
-4.209  33.991   10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 
1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.100  0.361  2.999  3.262   5.774    7.221    -8.704 5.525  2.456  37.103  
-20.963 9.801    11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 
1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 0.940  -1.205 3.287  -9.243  8.463    51.096   -1.891 -1.640 2.869  9.646   
10.535  52.510   12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 
1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.595 -2.101 3.365  -1.494  8.486    30.530   -5.329 0.828  2.722  15.725  
2.768   31.695   13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 
1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.494 -1.745 3.478  0.101   6.902    39.876   -3.313 0.726  3.144  10.029  
-0.147  40.445   14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 
1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -2.900 -1.178 2.894  10.269  4.229    68.861   -1.156 2.842  2.428  3.715   
-9.022  69.641   15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 
1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -1.661 -2.329 0.756  147.615 -87.068  -157.272 1.204  -0.764 0.790  43.577  
73.880  -178.303 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 
1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.418  -0.503 3.395  0.275   11.903   67.768   -0.900 -1.247 3.284  10.591  
-0.245  68.683   17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 
1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -1.341 -1.981 3.607  -2.177  7.538    33.999   -4.510 1.890  3.185  12.682  
3.663   34.867   18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 
1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.487  -1.661 3.857  -0.875  19.445   31.151   -5.439 -0.902 2.426  32.536  
1.464   36.604   19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 
1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.182  -1.742 2.853  9.421   2.276    93.841   -1.226 -1.337 2.979  1.555   
-6.435  94.223   20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 
1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.399  1.607  0.229  22.953  -168.652 -115.783 -0.648 1.222  0.867  85.065  
11.577  -174.799 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 
1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -2.726 -1.653 -1.847 96.197  -137.655 72.039   -1.478 0.915  -1.257 -70.857 
-49.517 170.250  22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 
1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.511 -1.337 3.741  -9.681  1.641    33.677   -2.506 -0.836 3.676  2.760   
16.284  35.039   23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 
1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.096 -1.213 3.533  7.705   7.035    37.574   -2.711 1.121  3.183  10.672  
-11.689 38.945   24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 
1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.118  -2.241 3.000  2.559   7.150    28.380   -5.709 0.228  2.378  14.264  
-5.104  29.358   25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' 2QC 
3 'MAGNESIUM ION'                                  MG  
4 'MANGANESE (II) ION'                             MN  
5 water                                            HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   2HOJ 
_pdbx_initial_refinement_model.details          'PDB ENTRY 2HOJ' 
#