data_4NYB # _entry.id 4NYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NYB pdb_00004nyb 10.2210/pdb4nyb/pdb NDB NA2827 ? ? RCSB RCSB083808 ? ? WWPDB D_1000083808 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NYA 'Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine' unspecified PDB 4NYC 'Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine' unspecified PDB 4NYD 'Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine' unspecified PDB 4NYG 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine' unspecified # _pdbx_database_status.entry_id 4NYB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Warner, K.D.' 1 'Homan, P.' 2 'Weeks, K.M.' 3 'Smith, A.G.' 4 'Abell, C.' 5 ;Ferre-D'Amare, A.R. ; 6 # _citation.id primary _citation.title 'Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 21 _citation.page_first 591 _citation.page_last 595 _citation.year 2014 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24768306 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2014.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warner, K.D.' 1 ? primary 'Homan, P.' 2 ? primary 'Weeks, K.M.' 3 ? primary 'Smith, A.G.' 4 ? primary 'Abell, C.' 5 ? primary ;Ferre-D'Amare, A.R. ; 6 ? # _cell.length_a 65.243 _cell.length_b 65.243 _cell.length_c 103.269 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4NYB _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.entry_id 4NYB _symmetry.Int_Tables_number 153 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thiM TPP riboswitch' 26860.900 1 ? ? ? ? 2 non-polymer syn '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' 191.253 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 4 ? ? ? ? 5 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4NYB _struct_ref.pdbx_db_accession 4NYB _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NYB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4NYB _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2QC non-polymer . '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' ? 'C9 H9 N3 S' 191.253 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.crystals_number 1 _exptl.entry_id 4NYB _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;30% PEG2000, 0.35 M ammonium chloride, 50 mM succinate/KOH, pH 7.0, 10 mM manganese chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'liquid nitrogen cooled dual crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.entry_id 4NYB _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 30.0 _reflns.number_obs 4709 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_netI_over_sigmaI 10.1 _reflns.pdbx_chi_squared 2.517 _reflns.pdbx_redundancy 4.5 _reflns.percent_possible_obs 99.1 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.100 3.150 ? ? ? 0.577 ? ? 1.063 4.4 ? 222 99.6 1 1 3.150 3.210 ? ? ? 0.456 ? ? 1.272 4.4 ? 238 100.0 2 1 3.210 3.270 ? ? ? 0.405 ? ? 1.320 4.6 ? 236 100.0 3 1 3.270 3.340 ? ? ? 0.341 ? ? 1.331 4.8 ? 234 99.6 4 1 3.340 3.410 ? ? ? 0.320 ? ? 1.673 4.8 ? 236 100.0 5 1 3.410 3.490 ? ? ? 0.296 ? ? 1.651 4.9 ? 220 100.0 6 1 3.490 3.580 ? ? ? 0.266 ? ? 1.767 4.8 ? 239 100.0 7 1 3.580 3.670 ? ? ? 0.254 ? ? 2.162 4.8 ? 237 100.0 8 1 3.670 3.780 ? ? ? 0.224 ? ? 2.070 4.8 ? 236 100.0 9 1 3.780 3.900 ? ? ? 0.194 ? ? 2.458 4.8 ? 237 100.0 10 1 3.900 4.040 ? ? ? 0.174 ? ? 2.404 4.8 ? 235 99.2 11 1 4.040 4.210 ? ? ? 0.152 ? ? 2.677 4.7 ? 234 99.2 12 1 4.210 4.400 ? ? ? 0.134 ? ? 2.926 4.6 ? 234 99.6 13 1 4.400 4.630 ? ? ? 0.118 ? ? 3.564 4.5 ? 233 99.6 14 1 4.630 4.920 ? ? ? 0.104 ? ? 3.467 4.5 ? 240 99.2 15 1 4.920 5.290 ? ? ? 0.086 ? ? 3.377 4.4 ? 229 99.1 16 1 5.290 5.820 ? ? ? 0.076 ? ? 3.684 4.2 ? 238 98.3 17 1 5.820 6.660 ? ? ? 0.074 ? ? 3.922 4.2 ? 241 98.4 18 1 6.660 8.360 ? ? ? 0.064 ? ? 3.938 4.0 ? 242 97.6 19 1 8.360 30.000 ? ? ? 0.052 ? ? 4.487 3.9 ? 248 94.3 20 1 # _refine.entry_id 4NYB _refine.ls_d_res_high 3.100 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.7 _refine.ls_number_reflns_obs 4526 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1883 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2488 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 477 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 82.8093 _refine.solvent_model_param_bsol 28.4881 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.0190 _refine.aniso_B[2][2] 1.0190 _refine.aniso_B[3][3] -2.0370 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2HOJ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 147.400 _refine.B_iso_min 28.520 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1673 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1709 _refine_hist.d_res_high 3.100 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.005 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.166 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 1.618 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.604 2.500 ? ? 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 cycp-dna-rna_rep-12.param cycp-dna-rna-12.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 fiv.par fiv.top 'X-RAY DIFFRACTION' # _struct.entry_id 4NYB _struct.title 'Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NYB _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'fragment-based drug discovery, riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 3 ? M N N 4 ? N N N 3 ? O N N 4 ? P N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 82 "O3'" ? ? ? 1_555 A A23 83 P ? ? A C 90 A A23 91 1_555 ? ? ? ? ? ? ? 1.601 ? ? metalc1 metalc ? ? A A 27 OP2 ? ? ? 1_555 J MG . MG ? ? A A 35 A MG 109 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc2 metalc ? ? A C 30 O2 ? ? ? 1_555 C MG . MG ? ? A C 38 A MG 102 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc3 metalc ? ? A G 32 N7 ? ? ? 1_555 O MN . MN ? ? A G 40 A MN 114 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc4 metalc ? ? A G 52 O6 ? ? ? 1_555 M MN . MN ? ? A G 60 A MN 112 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc5 metalc ? ? A C 55 OP1 ? ? ? 1_555 K MN . MN ? ? A C 63 A MN 110 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc6 metalc ? ? A U 56 OP2 ? ? ? 1_555 K MN . MN ? ? A U 64 A MN 110 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc7 metalc ? ? A A 59 OP2 ? ? ? 1_555 I MG . MG ? ? A A 67 A MG 108 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc8 metalc ? ? A A 61 OP1 ? ? ? 1_555 D MG . MG ? ? A A 69 A MG 103 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc9 metalc ? ? A G 64 O6 ? ? ? 1_555 M MN . MN ? ? A G 72 A MN 112 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc10 metalc ? ? A G 64 N1 ? ? ? 1_555 M MN . MN ? ? A G 72 A MN 112 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc11 metalc ? ? A G 70 O6 ? ? ? 1_555 M MN . MN ? ? A G 78 A MN 112 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc12 metalc ? ? A A23 83 OP1 ? ? ? 1_555 H MG . MG ? ? A A23 91 A MG 107 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc13 metalc ? ? I MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 108 A HOH 204 1_555 ? ? ? ? ? ? ? 2.469 ? ? metalc14 metalc ? ? J MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 109 A HOH 205 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc15 metalc ? ? K MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 110 A HOH 203 1_555 ? ? ? ? ? ? ? 2.476 ? ? metalc16 metalc ? ? O MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 114 A HOH 206 1_555 ? ? ? ? ? ? ? 1.839 ? ? metalc17 metalc ? ? O MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 114 A HOH 208 1_555 ? ? ? ? ? ? ? 1.814 ? ? metalc18 metalc ? ? O MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 114 A HOH 209 1_555 ? ? ? ? ? ? ? 2.241 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog30 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog31 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog33 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog48 hydrog ? ? A A 45 N6 ? ? ? 1_555 A A 76 N7 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog49 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog50 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog51 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog52 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog63 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2QC 101 ? 7 'BINDING SITE FOR RESIDUE 2QC A 101' AC2 Software A MG 102 ? 5 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MG 103 ? 2 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A MN 104 ? 2 'BINDING SITE FOR RESIDUE MN A 104' AC5 Software A MG 105 ? 1 'BINDING SITE FOR RESIDUE MG A 105' AC6 Software A MG 106 ? 2 'BINDING SITE FOR RESIDUE MG A 106' AC7 Software A MG 107 ? 2 'BINDING SITE FOR RESIDUE MG A 107' AC8 Software A MG 108 ? 3 'BINDING SITE FOR RESIDUE MG A 108' AC9 Software A MG 109 ? 3 'BINDING SITE FOR RESIDUE MG A 109' BC1 Software A MN 110 ? 4 'BINDING SITE FOR RESIDUE MN A 110' BC2 Software A MG 111 ? 1 'BINDING SITE FOR RESIDUE MG A 111' BC3 Software A MN 112 ? 4 'BINDING SITE FOR RESIDUE MN A 112' BC4 Software A MG 113 ? 2 'BINDING SITE FOR RESIDUE MG A 113' BC5 Software A MN 114 ? 5 'BINDING SITE FOR RESIDUE MN A 114' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 11 ? G A 19 . ? 1_555 ? 2 AC1 7 U A 31 ? U A 39 . ? 1_555 ? 3 AC1 7 G A 32 ? G A 40 . ? 1_555 ? 4 AC1 7 G A 34 ? G A 42 . ? 1_555 ? 5 AC1 7 A A 35 ? A A 43 . ? 1_555 ? 6 AC1 7 C A 65 ? C A 73 . ? 1_555 ? 7 AC1 7 C A 66 ? C A 74 . ? 1_555 ? 8 AC2 5 G A 13 ? G A 21 . ? 1_555 ? 9 AC2 5 C A 30 ? C A 38 . ? 1_555 ? 10 AC2 5 U A 31 ? U A 39 . ? 1_555 ? 11 AC2 5 U A 63 ? U A 71 . ? 1_555 ? 12 AC2 5 C A 65 ? C A 73 . ? 1_555 ? 13 AC3 2 A A 61 ? A A 69 . ? 1_555 ? 14 AC3 2 A23 A 83 ? A23 A 91 . ? 5_554 ? 15 AC4 2 A A 72 ? A A 80 . ? 1_555 ? 16 AC4 2 G A 73 ? G A 81 . ? 1_555 ? 17 AC5 1 G A 58 ? G A 66 . ? 1_555 ? 18 AC6 2 G A 10 ? G A 18 . ? 1_555 ? 19 AC6 2 HOH P . ? HOH A 202 . ? 1_555 ? 20 AC7 2 A A 61 ? A A 69 . ? 5_554 ? 21 AC7 2 A23 A 83 ? A23 A 91 . ? 1_555 ? 22 AC8 3 G A 58 ? G A 66 . ? 4_555 ? 23 AC8 3 A A 59 ? A A 67 . ? 1_555 ? 24 AC8 3 HOH P . ? HOH A 204 . ? 1_555 ? 25 AC9 3 A A 27 ? A A 35 . ? 1_555 ? 26 AC9 3 G A 28 ? G A 36 . ? 1_555 ? 27 AC9 3 HOH P . ? HOH A 205 . ? 1_555 ? 28 BC1 4 C A 55 ? C A 63 . ? 1_555 ? 29 BC1 4 U A 56 ? U A 64 . ? 1_555 ? 30 BC1 4 U A 56 ? U A 64 . ? 4_555 ? 31 BC1 4 HOH P . ? HOH A 203 . ? 1_555 ? 32 BC2 1 A A 33 ? A A 41 . ? 1_555 ? 33 BC3 4 U A 51 ? U A 59 . ? 1_555 ? 34 BC3 4 G A 52 ? G A 60 . ? 1_555 ? 35 BC3 4 G A 64 ? G A 72 . ? 1_555 ? 36 BC3 4 G A 70 ? G A 78 . ? 1_555 ? 37 BC4 2 A A 77 ? A A 85 . ? 1_555 ? 38 BC4 2 G A 78 ? G A 86 . ? 1_555 ? 39 BC5 5 G A 32 ? G A 40 . ? 1_555 ? 40 BC5 5 HOH P . ? HOH A 206 . ? 1_555 ? 41 BC5 5 HOH P . ? HOH A 207 . ? 1_555 ? 42 BC5 5 HOH P . ? HOH A 208 . ? 1_555 ? 43 BC5 5 HOH P . ? HOH A 209 . ? 1_555 ? # _atom_sites.entry_id 4NYB _atom_sites.fract_transf_matrix[1][1] 0.015327 _atom_sites.fract_transf_matrix[1][2] 0.008849 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017698 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009683 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A23 83 91 91 A23 A23 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2QC 1 101 1 2QC FIV A . C 3 MG 1 102 113 MG MG A . D 3 MG 1 103 102 MG MG A . E 4 MN 1 104 103 MN MN A . F 3 MG 1 105 104 MG MG A . G 3 MG 1 106 105 MG MG A . H 3 MG 1 107 106 MG MG A . I 3 MG 1 108 107 MG MG A . J 3 MG 1 109 108 MG MG A . K 4 MN 1 110 101 MN MN A . L 3 MG 1 111 109 MG MG A . M 4 MN 1 112 115 MN MN A . N 3 MG 1 113 117 MG MG A . O 4 MN 1 114 124 MN MN A . P 5 HOH 1 201 110 HOH HOH A . P 5 HOH 2 202 111 HOH HOH A . P 5 HOH 3 203 112 HOH HOH A . P 5 HOH 4 204 116 HOH HOH A . P 5 HOH 5 205 121 HOH HOH A . P 5 HOH 6 206 118 HOH HOH A . P 5 HOH 7 207 119 HOH HOH A . P 5 HOH 8 208 120 HOH HOH A . P 5 HOH 9 209 122 HOH HOH A . P 5 HOH 10 210 123 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 27 ? A A 35 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? P HOH . ? A HOH 205 ? 1_555 102.4 ? 2 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 206 ? 1_555 78.1 ? 3 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 208 ? 1_555 113.9 ? 4 O ? P HOH . ? A HOH 206 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 208 ? 1_555 88.6 ? 5 N7 ? A G 32 ? A G 40 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 209 ? 1_555 140.9 ? 6 O ? P HOH . ? A HOH 206 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 209 ? 1_555 63.0 ? 7 O ? P HOH . ? A HOH 208 ? 1_555 MN ? O MN . ? A MN 114 ? 1_555 O ? P HOH . ? A HOH 209 ? 1_555 70.7 ? 8 O6 ? A G 52 ? A G 60 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6 ? A G 64 ? A G 72 ? 1_555 91.7 ? 9 O6 ? A G 52 ? A G 60 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 N1 ? A G 64 ? A G 72 ? 1_555 129.8 ? 10 O6 ? A G 64 ? A G 72 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 N1 ? A G 64 ? A G 72 ? 1_555 53.7 ? 11 O6 ? A G 52 ? A G 60 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 95.6 ? 12 O6 ? A G 64 ? A G 72 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 168.6 ? 13 N1 ? A G 64 ? A G 72 ? 1_555 MN ? M MN . ? A MN 112 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 115.1 ? 14 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 120.4 ? 15 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O ? P HOH . ? A HOH 203 ? 1_555 117.1 ? 16 OP2 ? A U 56 ? A U 64 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O ? P HOH . ? A HOH 203 ? 1_555 119.4 ? 17 OP2 ? A A 59 ? A A 67 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? P HOH . ? A HOH 204 ? 1_555 70.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-04 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 MN A MN 114 ? ? O A HOH 207 ? ? 1.56 2 1 O A HOH 206 ? ? O A HOH 209 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N1 A G 31 ? ? 1_555 N1 A G 31 ? ? 4_445 2.07 2 1 O6 A G 31 ? ? 1_555 O6 A G 31 ? ? 4_445 2.09 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N1 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 62 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 62 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 62 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.50 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation 8.50 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 26 ? "C5'" ? A U 18 "C5'" 2 1 Y 1 A U 26 ? "C4'" ? A U 18 "C4'" 3 1 Y 1 A U 26 ? "O4'" ? A U 18 "O4'" 4 1 Y 1 A U 26 ? "C3'" ? A U 18 "C3'" 5 1 Y 1 A U 26 ? "O3'" ? A U 18 "O3'" 6 1 Y 1 A U 26 ? "C2'" ? A U 18 "C2'" 7 1 Y 1 A U 26 ? "O2'" ? A U 18 "O2'" 8 1 Y 1 A U 26 ? "C1'" ? A U 18 "C1'" 9 1 Y 1 A U 26 ? N1 ? A U 18 N1 10 1 Y 1 A U 26 ? C2 ? A U 18 C2 11 1 Y 1 A U 26 ? O2 ? A U 18 O2 12 1 Y 1 A U 26 ? N3 ? A U 18 N3 13 1 Y 1 A U 26 ? C4 ? A U 18 C4 14 1 Y 1 A U 26 ? O4 ? A U 18 O4 15 1 Y 1 A U 26 ? C5 ? A U 18 C5 16 1 Y 1 A U 26 ? C6 ? A U 18 C6 17 1 Y 1 A U 54 ? N1 ? A U 46 N1 18 1 Y 1 A U 54 ? C2 ? A U 46 C2 19 1 Y 1 A U 54 ? O2 ? A U 46 O2 20 1 Y 1 A U 54 ? N3 ? A U 46 N3 21 1 Y 1 A U 54 ? C4 ? A U 46 C4 22 1 Y 1 A U 54 ? O4 ? A U 46 O4 23 1 Y 1 A U 54 ? C5 ? A U 46 C5 24 1 Y 1 A U 54 ? C6 ? A U 46 C6 25 1 Y 1 A C 55 ? N1 ? A C 47 N1 26 1 Y 1 A C 55 ? C2 ? A C 47 C2 27 1 Y 1 A C 55 ? O2 ? A C 47 O2 28 1 Y 1 A C 55 ? N3 ? A C 47 N3 29 1 Y 1 A C 55 ? C4 ? A C 47 C4 30 1 Y 1 A C 55 ? N4 ? A C 47 N4 31 1 Y 1 A C 55 ? C5 ? A C 47 C5 32 1 Y 1 A C 55 ? C6 ? A C 47 C6 33 1 Y 1 A U 79 ? N1 ? A U 71 N1 34 1 Y 1 A U 79 ? C2 ? A U 71 C2 35 1 Y 1 A U 79 ? O2 ? A U 71 O2 36 1 Y 1 A U 79 ? N3 ? A U 71 N3 37 1 Y 1 A U 79 ? C4 ? A U 71 C4 38 1 Y 1 A U 79 ? O4 ? A U 71 O4 39 1 Y 1 A U 79 ? C5 ? A U 71 C5 40 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 27 ? A C 19 2 1 Y 1 A U 28 ? A U 20 3 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2QC CAE C Y N 1 2QC CAF C Y N 2 2QC CAK C Y N 3 2QC CAL C N N 4 2QC NAM N N N 5 2QC CAJ C Y N 6 2QC CAI C Y N 7 2QC CAD C Y N 8 2QC CAC C Y N 9 2QC NAB N Y N 10 2QC NAA N Y N 11 2QC SAG S Y N 12 2QC CAH C Y N 13 2QC H1 H N N 14 2QC H2 H N N 15 2QC H3 H N N 16 2QC H4 H N N 17 2QC H5 H N N 18 2QC H6 H N N 19 2QC H8 H N N 20 2QC H9 H N N 21 2QC H11 H N N 22 A OP3 O N N 23 A P P N N 24 A OP1 O N N 25 A OP2 O N N 26 A "O5'" O N N 27 A "C5'" C N N 28 A "C4'" C N R 29 A "O4'" O N N 30 A "C3'" C N S 31 A "O3'" O N N 32 A "C2'" C N R 33 A "O2'" O N N 34 A "C1'" C N R 35 A N9 N Y N 36 A C8 C Y N 37 A N7 N Y N 38 A C5 C Y N 39 A C6 C Y N 40 A N6 N N N 41 A N1 N Y N 42 A C2 C Y N 43 A N3 N Y N 44 A C4 C Y N 45 A HOP3 H N N 46 A HOP2 H N N 47 A "H5'" H N N 48 A "H5''" H N N 49 A "H4'" H N N 50 A "H3'" H N N 51 A "HO3'" H N N 52 A "H2'" H N N 53 A "HO2'" H N N 54 A "H1'" H N N 55 A H8 H N N 56 A H61 H N N 57 A H62 H N N 58 A H2 H N N 59 A23 PC P N S 60 A23 O1C O N N 61 A23 O2C O N N 62 A23 P P N N 63 A23 OP1 O N N 64 A23 OP2 O N N 65 A23 OP3 O N N 66 A23 "O5'" O N N 67 A23 "C5'" C N N 68 A23 "C4'" C N R 69 A23 "O4'" O N N 70 A23 "C3'" C N R 71 A23 "O3'" O N N 72 A23 "C2'" C N R 73 A23 "O2'" O N N 74 A23 "C1'" C N R 75 A23 N9 N Y N 76 A23 C8 C Y N 77 A23 N7 N Y N 78 A23 C5 C Y N 79 A23 C6 C Y N 80 A23 N6 N N N 81 A23 N1 N Y N 82 A23 C2 C Y N 83 A23 N3 N Y N 84 A23 C4 C Y N 85 A23 HOC2 H N N 86 A23 HOP2 H N N 87 A23 HOP3 H N N 88 A23 "H5'" H N N 89 A23 "H5''" H N N 90 A23 "H4'" H N N 91 A23 "H3'" H N N 92 A23 "H2'" H N N 93 A23 "H1'" H N N 94 A23 H8 H N N 95 A23 HN61 H N N 96 A23 HN62 H N N 97 A23 H2 H N N 98 C OP3 O N N 99 C P P N N 100 C OP1 O N N 101 C OP2 O N N 102 C "O5'" O N N 103 C "C5'" C N N 104 C "C4'" C N R 105 C "O4'" O N N 106 C "C3'" C N S 107 C "O3'" O N N 108 C "C2'" C N R 109 C "O2'" O N N 110 C "C1'" C N R 111 C N1 N N N 112 C C2 C N N 113 C O2 O N N 114 C N3 N N N 115 C C4 C N N 116 C N4 N N N 117 C C5 C N N 118 C C6 C N N 119 C HOP3 H N N 120 C HOP2 H N N 121 C "H5'" H N N 122 C "H5''" H N N 123 C "H4'" H N N 124 C "H3'" H N N 125 C "HO3'" H N N 126 C "H2'" H N N 127 C "HO2'" H N N 128 C "H1'" H N N 129 C H41 H N N 130 C H42 H N N 131 C H5 H N N 132 C H6 H N N 133 G OP3 O N N 134 G P P N N 135 G OP1 O N N 136 G OP2 O N N 137 G "O5'" O N N 138 G "C5'" C N N 139 G "C4'" C N R 140 G "O4'" O N N 141 G "C3'" C N S 142 G "O3'" O N N 143 G "C2'" C N R 144 G "O2'" O N N 145 G "C1'" C N R 146 G N9 N Y N 147 G C8 C Y N 148 G N7 N Y N 149 G C5 C Y N 150 G C6 C N N 151 G O6 O N N 152 G N1 N N N 153 G C2 C N N 154 G N2 N N N 155 G N3 N N N 156 G C4 C Y N 157 G HOP3 H N N 158 G HOP2 H N N 159 G "H5'" H N N 160 G "H5''" H N N 161 G "H4'" H N N 162 G "H3'" H N N 163 G "HO3'" H N N 164 G "H2'" H N N 165 G "HO2'" H N N 166 G "H1'" H N N 167 G H8 H N N 168 G H1 H N N 169 G H21 H N N 170 G H22 H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 MG MG MG N N 175 MN MN MN N N 176 U OP3 O N N 177 U P P N N 178 U OP1 O N N 179 U OP2 O N N 180 U "O5'" O N N 181 U "C5'" C N N 182 U "C4'" C N R 183 U "O4'" O N N 184 U "C3'" C N S 185 U "O3'" O N N 186 U "C2'" C N R 187 U "O2'" O N N 188 U "C1'" C N R 189 U N1 N N N 190 U C2 C N N 191 U O2 O N N 192 U N3 N N N 193 U C4 C N N 194 U O4 O N N 195 U C5 C N N 196 U C6 C N N 197 U HOP3 H N N 198 U HOP2 H N N 199 U "H5'" H N N 200 U "H5''" H N N 201 U "H4'" H N N 202 U "H3'" H N N 203 U "HO3'" H N N 204 U "H2'" H N N 205 U "HO2'" H N N 206 U "H1'" H N N 207 U H3 H N N 208 U H5 H N N 209 U H6 H N N 210 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2QC CAE CAF doub Y N 1 2QC CAE CAD sing Y N 2 2QC CAF CAK sing Y N 3 2QC CAK CAL sing N N 4 2QC CAK CAJ doub Y N 5 2QC CAL NAM sing N N 6 2QC CAJ CAI sing Y N 7 2QC CAI CAD doub Y N 8 2QC CAD CAC sing N N 9 2QC CAC NAB sing Y N 10 2QC CAC CAH doub Y N 11 2QC NAB NAA doub Y N 12 2QC NAA SAG sing Y N 13 2QC SAG CAH sing Y N 14 2QC CAE H1 sing N N 15 2QC CAF H2 sing N N 16 2QC CAL H3 sing N N 17 2QC CAL H4 sing N N 18 2QC NAM H5 sing N N 19 2QC NAM H6 sing N N 20 2QC CAJ H8 sing N N 21 2QC CAI H9 sing N N 22 2QC CAH H11 sing N N 23 A OP3 P sing N N 24 A OP3 HOP3 sing N N 25 A P OP1 doub N N 26 A P OP2 sing N N 27 A P "O5'" sing N N 28 A OP2 HOP2 sing N N 29 A "O5'" "C5'" sing N N 30 A "C5'" "C4'" sing N N 31 A "C5'" "H5'" sing N N 32 A "C5'" "H5''" sing N N 33 A "C4'" "O4'" sing N N 34 A "C4'" "C3'" sing N N 35 A "C4'" "H4'" sing N N 36 A "O4'" "C1'" sing N N 37 A "C3'" "O3'" sing N N 38 A "C3'" "C2'" sing N N 39 A "C3'" "H3'" sing N N 40 A "O3'" "HO3'" sing N N 41 A "C2'" "O2'" sing N N 42 A "C2'" "C1'" sing N N 43 A "C2'" "H2'" sing N N 44 A "O2'" "HO2'" sing N N 45 A "C1'" N9 sing N N 46 A "C1'" "H1'" sing N N 47 A N9 C8 sing Y N 48 A N9 C4 sing Y N 49 A C8 N7 doub Y N 50 A C8 H8 sing N N 51 A N7 C5 sing Y N 52 A C5 C6 sing Y N 53 A C5 C4 doub Y N 54 A C6 N6 sing N N 55 A C6 N1 doub Y N 56 A N6 H61 sing N N 57 A N6 H62 sing N N 58 A N1 C2 sing Y N 59 A C2 N3 doub Y N 60 A C2 H2 sing N N 61 A N3 C4 sing Y N 62 A23 PC O1C doub N N 63 A23 PC O2C sing N N 64 A23 PC "O3'" sing N N 65 A23 PC "O2'" sing N N 66 A23 O2C HOC2 sing N N 67 A23 P OP1 doub N N 68 A23 P OP2 sing N N 69 A23 P OP3 sing N N 70 A23 P "O5'" sing N N 71 A23 OP2 HOP2 sing N N 72 A23 OP3 HOP3 sing N N 73 A23 "O5'" "C5'" sing N N 74 A23 "C5'" "C4'" sing N N 75 A23 "C5'" "H5'" sing N N 76 A23 "C5'" "H5''" sing N N 77 A23 "C4'" "O4'" sing N N 78 A23 "C4'" "C3'" sing N N 79 A23 "C4'" "H4'" sing N N 80 A23 "O4'" "C1'" sing N N 81 A23 "C3'" "O3'" sing N N 82 A23 "C3'" "C2'" sing N N 83 A23 "C3'" "H3'" sing N N 84 A23 "C2'" "O2'" sing N N 85 A23 "C2'" "C1'" sing N N 86 A23 "C2'" "H2'" sing N N 87 A23 "C1'" N9 sing N N 88 A23 "C1'" "H1'" sing N N 89 A23 N9 C8 sing Y N 90 A23 N9 C4 sing Y N 91 A23 C8 N7 doub Y N 92 A23 C8 H8 sing N N 93 A23 N7 C5 sing Y N 94 A23 C5 C6 sing Y N 95 A23 C5 C4 doub Y N 96 A23 C6 N6 sing N N 97 A23 C6 N1 doub Y N 98 A23 N6 HN61 sing N N 99 A23 N6 HN62 sing N N 100 A23 N1 C2 sing Y N 101 A23 C2 N3 doub Y N 102 A23 C2 H2 sing N N 103 A23 N3 C4 sing Y N 104 C OP3 P sing N N 105 C OP3 HOP3 sing N N 106 C P OP1 doub N N 107 C P OP2 sing N N 108 C P "O5'" sing N N 109 C OP2 HOP2 sing N N 110 C "O5'" "C5'" sing N N 111 C "C5'" "C4'" sing N N 112 C "C5'" "H5'" sing N N 113 C "C5'" "H5''" sing N N 114 C "C4'" "O4'" sing N N 115 C "C4'" "C3'" sing N N 116 C "C4'" "H4'" sing N N 117 C "O4'" "C1'" sing N N 118 C "C3'" "O3'" sing N N 119 C "C3'" "C2'" sing N N 120 C "C3'" "H3'" sing N N 121 C "O3'" "HO3'" sing N N 122 C "C2'" "O2'" sing N N 123 C "C2'" "C1'" sing N N 124 C "C2'" "H2'" sing N N 125 C "O2'" "HO2'" sing N N 126 C "C1'" N1 sing N N 127 C "C1'" "H1'" sing N N 128 C N1 C2 sing N N 129 C N1 C6 sing N N 130 C C2 O2 doub N N 131 C C2 N3 sing N N 132 C N3 C4 doub N N 133 C C4 N4 sing N N 134 C C4 C5 sing N N 135 C N4 H41 sing N N 136 C N4 H42 sing N N 137 C C5 C6 doub N N 138 C C5 H5 sing N N 139 C C6 H6 sing N N 140 G OP3 P sing N N 141 G OP3 HOP3 sing N N 142 G P OP1 doub N N 143 G P OP2 sing N N 144 G P "O5'" sing N N 145 G OP2 HOP2 sing N N 146 G "O5'" "C5'" sing N N 147 G "C5'" "C4'" sing N N 148 G "C5'" "H5'" sing N N 149 G "C5'" "H5''" sing N N 150 G "C4'" "O4'" sing N N 151 G "C4'" "C3'" sing N N 152 G "C4'" "H4'" sing N N 153 G "O4'" "C1'" sing N N 154 G "C3'" "O3'" sing N N 155 G "C3'" "C2'" sing N N 156 G "C3'" "H3'" sing N N 157 G "O3'" "HO3'" sing N N 158 G "C2'" "O2'" sing N N 159 G "C2'" "C1'" sing N N 160 G "C2'" "H2'" sing N N 161 G "O2'" "HO2'" sing N N 162 G "C1'" N9 sing N N 163 G "C1'" "H1'" sing N N 164 G N9 C8 sing Y N 165 G N9 C4 sing Y N 166 G C8 N7 doub Y N 167 G C8 H8 sing N N 168 G N7 C5 sing Y N 169 G C5 C6 sing N N 170 G C5 C4 doub Y N 171 G C6 O6 doub N N 172 G C6 N1 sing N N 173 G N1 C2 sing N N 174 G N1 H1 sing N N 175 G C2 N2 sing N N 176 G C2 N3 doub N N 177 G N2 H21 sing N N 178 G N2 H22 sing N N 179 G N3 C4 sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 U OP3 P sing N N 183 U OP3 HOP3 sing N N 184 U P OP1 doub N N 185 U P OP2 sing N N 186 U P "O5'" sing N N 187 U OP2 HOP2 sing N N 188 U "O5'" "C5'" sing N N 189 U "C5'" "C4'" sing N N 190 U "C5'" "H5'" sing N N 191 U "C5'" "H5''" sing N N 192 U "C4'" "O4'" sing N N 193 U "C4'" "C3'" sing N N 194 U "C4'" "H4'" sing N N 195 U "O4'" "C1'" sing N N 196 U "C3'" "O3'" sing N N 197 U "C3'" "C2'" sing N N 198 U "C3'" "H3'" sing N N 199 U "O3'" "HO3'" sing N N 200 U "C2'" "O2'" sing N N 201 U "C2'" "C1'" sing N N 202 U "C2'" "H2'" sing N N 203 U "O2'" "HO2'" sing N N 204 U "C1'" N1 sing N N 205 U "C1'" "H1'" sing N N 206 U N1 C2 sing N N 207 U N1 C6 sing N N 208 U C2 O2 doub N N 209 U C2 N3 sing N N 210 U N3 C4 sing N N 211 U N3 H3 sing N N 212 U C4 O4 doub N N 213 U C4 C5 sing N N 214 U C5 C6 doub N N 215 U C5 H5 sing N N 216 U C6 H6 sing N N 217 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NYB 'double helix' 4NYB 'a-form double helix' 4NYB 'hairpin loop' 4NYB 'bulge loop' 4NYB 'mismatched base pair' 4NYB 'internal loop' 4NYB 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 0.389 0.116 0.295 -0.454 -19.442 6.419 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 0.410 -0.254 0.626 -8.843 -13.788 3.862 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.169 0.094 -0.112 -4.765 -11.450 4.695 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.942 -0.068 0.113 2.806 -13.213 -3.434 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.580 -0.462 0.173 4.623 -18.032 -0.640 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 0.111 -0.015 -0.040 -2.519 -15.574 5.835 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 -0.386 -0.138 -0.015 10.209 -13.146 2.626 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.436 -0.069 0.322 -4.473 -15.153 4.529 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.538 0.064 0.648 -13.060 -13.654 8.439 9 A_G17:C49_A A 17 ? A 49 ? ? 1 1 A G 10 1_555 A C 40 1_555 -0.271 0.014 0.246 -15.173 -24.181 0.678 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.524 1.458 -0.061 -3.171 -16.394 -22.788 11 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 -0.343 -0.340 -0.154 18.750 10.117 -0.013 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -4.967 -1.516 -0.313 4.233 -8.617 -7.641 13 A_A35:C24_A A 35 ? A 24 ? ? ? 1 A G 28 1_555 A C 15 1_555 0.001 -0.046 0.284 5.071 -7.322 3.677 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.454 -0.292 -0.061 -6.390 -5.112 4.028 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.734 0.059 0.370 -12.172 3.419 -3.862 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.311 -2.323 0.617 6.526 14.116 -93.258 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 5.071 -5.351 -0.306 -23.528 22.625 168.696 18 A_A53:A84_A A 53 ? A 84 ? 2 7 1 A A 48 1_555 A G 75 1_555 -6.763 -4.418 0.574 14.275 -16.865 -10.227 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 0.787 -0.175 0.009 13.207 -12.464 2.703 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 1.363 -0.416 -0.239 2.961 -9.136 -8.555 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 -0.449 -0.288 0.211 -24.325 -14.061 -4.756 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.155 3.644 -0.086 -15.231 15.200 -98.735 23 A_G60:G78_A A 60 ? A 78 ? 6 3 1 A A 53 1_555 A C 69 1_555 -1.816 2.935 -0.086 2.297 -12.567 106.519 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.059 0.011 -0.051 9.534 -21.047 6.519 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 0.034 -0.233 0.388 -3.846 -10.575 -0.222 26 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 1.354 -0.059 -0.384 -12.363 -12.703 1.718 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 0.432 -0.063 -0.121 -8.084 -7.831 -1.069 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.070 -1.173 3.509 -3.444 -0.353 35.793 -1.847 -0.641 3.498 -0.572 5.587 35.954 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.113 -1.677 2.958 6.843 8.443 29.397 -4.450 0.878 2.363 15.965 -12.940 31.300 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.564 -1.368 3.095 -3.054 2.107 32.702 -2.754 0.505 3.042 3.728 5.402 32.907 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 0.103 -1.321 3.198 -0.794 1.572 35.152 -2.411 -0.286 3.135 2.602 1.313 35.195 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.737 -0.946 3.318 5.736 4.638 31.290 -2.554 -0.289 3.229 8.453 -10.454 32.127 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.365 -0.824 2.876 1.115 6.445 34.999 -2.158 -2.093 2.727 10.602 -1.834 35.586 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.848 -1.794 3.538 -2.472 7.807 32.692 -4.382 -1.871 2.972 13.606 4.308 33.675 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.126 -1.636 3.353 -0.673 1.284 36.836 -2.764 0.106 3.298 2.032 1.065 36.863 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 0.003 -1.702 3.195 7.576 8.951 30.910 -4.375 1.163 2.547 16.087 -13.615 33.009 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.532 -0.946 2.859 2.437 7.999 32.975 -2.673 2.942 2.453 13.818 -4.209 33.991 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.100 0.361 2.999 3.262 5.774 7.221 -8.704 5.525 2.456 37.103 -20.963 9.801 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 0.940 -1.205 3.287 -9.243 8.463 51.096 -1.891 -1.640 2.869 9.646 10.535 52.510 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.595 -2.101 3.365 -1.494 8.486 30.530 -5.329 0.828 2.722 15.725 2.768 31.695 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.494 -1.745 3.478 0.101 6.902 39.876 -3.313 0.726 3.144 10.029 -0.147 40.445 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -2.900 -1.178 2.894 10.269 4.229 68.861 -1.156 2.842 2.428 3.715 -9.022 69.641 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -1.661 -2.329 0.756 147.615 -87.068 -157.272 1.204 -0.764 0.790 43.577 73.880 -178.303 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.418 -0.503 3.395 0.275 11.903 67.768 -0.900 -1.247 3.284 10.591 -0.245 68.683 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -1.341 -1.981 3.607 -2.177 7.538 33.999 -4.510 1.890 3.185 12.682 3.663 34.867 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.487 -1.661 3.857 -0.875 19.445 31.151 -5.439 -0.902 2.426 32.536 1.464 36.604 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.182 -1.742 2.853 9.421 2.276 93.841 -1.226 -1.337 2.979 1.555 -6.435 94.223 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.399 1.607 0.229 22.953 -168.652 -115.783 -0.648 1.222 0.867 85.065 11.577 -174.799 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -2.726 -1.653 -1.847 96.197 -137.655 72.039 -1.478 0.915 -1.257 -70.857 -49.517 170.250 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.511 -1.337 3.741 -9.681 1.641 33.677 -2.506 -0.836 3.676 2.760 16.284 35.039 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.096 -1.213 3.533 7.705 7.035 37.574 -2.711 1.121 3.183 10.672 -11.689 38.945 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.118 -2.241 3.000 2.559 7.150 28.380 -5.709 0.228 2.378 14.264 -5.104 29.358 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-[4-(1,2,3-thiadiazol-4-yl)phenyl]methanamine' 2QC 3 'MAGNESIUM ION' MG 4 'MANGANESE (II) ION' MN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HOJ _pdbx_initial_refinement_model.details 'PDB ENTRY 2HOJ' #