data_4NYX # _entry.id 4NYX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NYX pdb_00004nyx 10.2210/pdb4nyx/pdb RCSB RCSB083830 ? ? WWPDB D_1000083830 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NYV . unspecified PDB 4NYW . unspecified # _pdbx_database_status.entry_id 4NYX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Felletar, I.' 3 'Rooney, T.P.C.' 4 'Fedorov, O.' 5 'Martin, S.' 6 'Monteiro, O.P.' 7 'Conway, S.J.' 8 'von Delft, F.' 9 'Brennan, P.' 10 'Arrowsmith, C.H.' 11 'Edwards, A.M.' 12 'Bountra, C.' 13 'Knapp, S.' 14 'Structural Genomics Consortium (SGC)' 15 # _citation.id primary _citation.title 'Crystal Structure of the Bromodomain of human CREBBP in complex with a dihydroquinoxalinone ligand' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Felletar, I.' 3 ? primary 'Rooney, T.P.C.' 4 ? primary 'Fedorov, O.' 5 ? primary 'Martin, S.' 6 ? primary 'Monteiro, O.P.' 7 ? primary 'Conway, S.J.' 8 ? primary 'von Delft, F.' 9 ? primary 'Brennan, P.' 10 ? primary 'Arrowsmith, C.H.' 11 ? primary 'Edwards, A.M.' 12 ? primary 'Bountra, C.' 13 ? primary 'Knapp, S.' 14 ? # _cell.length_a 40.047 _cell.length_b 34.358 _cell.length_c 90.934 _cell.angle_alpha 90.000 _cell.angle_beta 97.720 _cell.angle_gamma 90.000 _cell.entry_id 4NYX _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.entry_id 4NYX _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CREB-binding protein' 14223.349 1 ? ? 'UNP residues 1081-1197' ? 2 non-polymer syn '(3R)-N-[3-(7-methoxy-3,4-dihydroquinolin-1(2H)-yl)propyl]-3-methyl-2-oxo-1,2,3,4-tetrahydroquinoxaline-5-carboxamide' 408.493 1 ? ? ? ? 3 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVW LMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLG ; _entity_poly.pdbx_seq_one_letter_code_can ;SMRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVW LMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ARG n 1 4 LYS n 1 5 LYS n 1 6 ILE n 1 7 PHE n 1 8 LYS n 1 9 PRO n 1 10 GLU n 1 11 GLU n 1 12 LEU n 1 13 ARG n 1 14 GLN n 1 15 ALA n 1 16 LEU n 1 17 MET n 1 18 PRO n 1 19 THR n 1 20 LEU n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 TYR n 1 25 ARG n 1 26 GLN n 1 27 ASP n 1 28 PRO n 1 29 GLU n 1 30 SER n 1 31 LEU n 1 32 PRO n 1 33 PHE n 1 34 ARG n 1 35 GLN n 1 36 PRO n 1 37 VAL n 1 38 ASP n 1 39 PRO n 1 40 GLN n 1 41 LEU n 1 42 LEU n 1 43 GLY n 1 44 ILE n 1 45 PRO n 1 46 ASP n 1 47 TYR n 1 48 PHE n 1 49 ASP n 1 50 ILE n 1 51 VAL n 1 52 LYS n 1 53 ASN n 1 54 PRO n 1 55 MET n 1 56 ASP n 1 57 LEU n 1 58 SER n 1 59 THR n 1 60 ILE n 1 61 LYS n 1 62 ARG n 1 63 LYS n 1 64 LEU n 1 65 ASP n 1 66 THR n 1 67 GLY n 1 68 GLN n 1 69 TYR n 1 70 GLN n 1 71 GLU n 1 72 PRO n 1 73 TRP n 1 74 GLN n 1 75 TYR n 1 76 VAL n 1 77 ASP n 1 78 ASP n 1 79 VAL n 1 80 TRP n 1 81 LEU n 1 82 MET n 1 83 PHE n 1 84 ASN n 1 85 ASN n 1 86 ALA n 1 87 TRP n 1 88 LEU n 1 89 TYR n 1 90 ASN n 1 91 ARG n 1 92 LYS n 1 93 THR n 1 94 SER n 1 95 ARG n 1 96 VAL n 1 97 TYR n 1 98 LYS n 1 99 PHE n 1 100 CYS n 1 101 SER n 1 102 LYS n 1 103 LEU n 1 104 ALA n 1 105 GLU n 1 106 VAL n 1 107 PHE n 1 108 GLU n 1 109 GLN n 1 110 GLU n 1 111 ILE n 1 112 ASP n 1 113 PRO n 1 114 VAL n 1 115 MET n 1 116 GLN n 1 117 SER n 1 118 LEU n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CBP, CREBBP' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBP_HUMAN _struct_ref.pdbx_db_accession Q92793 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLG ; _struct_ref.pdbx_align_begin 1081 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NYX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92793 _struct_ref_seq.db_align_beg 1081 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1081 _struct_ref_seq.pdbx_auth_seq_align_end 1197 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NYX SER A 1 ? UNP Q92793 ? ? 'expression tag' 1079 1 1 4NYX MET A 2 ? UNP Q92793 ? ? 'expression tag' 1080 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2O4 non-polymer . '(3R)-N-[3-(7-methoxy-3,4-dihydroquinolin-1(2H)-yl)propyl]-3-methyl-2-oxo-1,2,3,4-tetrahydroquinoxaline-5-carboxamide' ? 'C23 H28 N4 O3' 408.493 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NYX _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.05M CaCl2, 0.1M TRIS, 20.0% PEG 6K, 10.0% EtGly, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-09-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 # _reflns.entry_id 4NYX _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.10 _reflns.d_resolution_low 45.06 _reflns.number_all 49969 _reflns.number_obs 49269 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.022 _reflns.pdbx_Rsym_value 0.022 _reflns.pdbx_netI_over_sigmaI 23.4 _reflns.B_iso_Wilson_estimate 9.2 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.1 1.16 ? 96.6 0.105 7.0 0.105 2.6 6971 ? ? ? ? 1 1 1.16 1.23 ? 99.8 0.082 9.9 0.082 3.0 6895 ? ? ? ? 2 1 1.23 1.31 ? 99.9 0.065 12.8 0.065 3.1 6441 ? ? ? ? 3 1 1.31 1.42 ? 99.8 0.052 16.2 0.052 3.2 6007 ? ? ? ? 4 1 1.42 1.56 ? 99.8 0.039 22.4 0.039 3.3 5545 ? ? ? ? 5 1 1.56 1.74 ? 99.3 0.030 29.1 0.030 3.3 4983 ? ? ? ? 6 1 1.74 2.01 ? 98.0 0.025 37.9 0.025 3.2 4395 ? ? ? ? 7 1 2.01 2.46 ? 96.8 0.020 47.8 0.020 3.2 3625 ? ? ? ? 8 1 2.46 3.48 ? 96.2 0.017 54.1 0.017 3.2 2842 ? ? ? ? 9 1 3.48 45.06 ? 97.0 0.018 58.3 0.018 3.1 1601 ? ? ? ? 10 1 # _refine.entry_id 4NYX _refine.ls_d_res_high 1.1000 _refine.ls_d_res_low 38.2900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.6100 _refine.ls_number_reflns_obs 49268 _refine.ls_number_reflns_all 49962 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.1199 _refine.ls_R_factor_R_work 0.1193 _refine.ls_wR_factor_R_work 0.1187 _refine.ls_R_factor_R_free 0.1348 _refine.ls_wR_factor_R_free 0.1363 _refine.ls_percent_reflns_R_free 4.1000 _refine.ls_number_reflns_R_free 2009 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.6912 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3200 _refine.aniso_B[2][2] 0.5600 _refine.aniso_B[3][3] -0.2200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.1000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9810 _refine.correlation_coeff_Fo_to_Fc_free 0.9770 _refine.overall_SU_R_Cruickshank_DPI 0.0238 _refine.overall_SU_R_free 0.0237 _refine.pdbx_overall_ESU_R 0.0240 _refine.pdbx_overall_ESU_R_Free 0.0240 _refine.overall_SU_ML 0.0130 _refine.overall_SU_B 0.5440 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9510 _refine.B_iso_max 93.950 _refine.B_iso_min 6.830 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 964 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 1143 _refine_hist.d_res_high 1.1000 _refine_hist.d_res_low 38.2900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1047 0.014 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 982 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1431 1.741 2.012 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2271 0.885 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 123 7.334 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 52 41.459 24.808 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 178 11.515 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 24.893 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 148 0.106 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1269 0.010 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 241 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 471 1.754 2.376 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 470 1.425 2.348 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 589 2.093 4.455 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2029 4.145 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 41 27.510 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2106 9.439 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.1000 _refine_ls_shell.d_res_low 1.1290 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.4700 _refine_ls_shell.number_reflns_R_work 3297 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1440 _refine_ls_shell.R_factor_R_free 0.1450 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 123 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3420 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NYX _struct.title 'Crystal Structure of the Bromodomain of human CREBBP in complex with a dihydroquinoxalinone ligand' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NYX _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'CREBBP, CREB BINDING, KAT3A, RSTS, RST, BROMODOMAIN, TRANSCRIPTION, Structural Genomics Consortium, SGC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 8 ? ARG A 25 ? LYS A 1086 ARG A 1103 1 ? 18 HELX_P HELX_P2 2 SER A 30 ? ARG A 34 ? SER A 1108 ARG A 1112 5 ? 5 HELX_P HELX_P3 3 ASP A 38 ? GLY A 43 ? ASP A 1116 GLY A 1121 1 ? 6 HELX_P HELX_P4 4 ASP A 46 ? VAL A 51 ? ASP A 1124 VAL A 1129 1 ? 6 HELX_P HELX_P5 5 ASP A 56 ? THR A 66 ? ASP A 1134 THR A 1144 1 ? 11 HELX_P HELX_P6 6 GLU A 71 ? ASN A 90 ? GLU A 1149 ASN A 1168 1 ? 20 HELX_P HELX_P7 7 SER A 94 ? GLY A 119 ? SER A 1172 GLY A 1197 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 27 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 1105 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 28 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 1106 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.96 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 2O4 _struct_site.pdbx_auth_seq_id 1201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE 2O4 A 1201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PRO A 32 ? PRO A 1110 . ? 1_555 ? 2 AC1 10 VAL A 37 ? VAL A 1115 . ? 1_555 ? 3 AC1 10 LEU A 42 ? LEU A 1120 . ? 1_555 ? 4 AC1 10 ASN A 90 ? ASN A 1168 . ? 1_555 ? 5 AC1 10 ARG A 95 ? ARG A 1173 . ? 1_555 ? 6 AC1 10 VAL A 96 ? VAL A 1174 . ? 1_555 ? 7 AC1 10 HOH C . ? HOH A 1302 . ? 1_555 ? 8 AC1 10 HOH C . ? HOH A 1346 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 1389 . ? 4_555 ? 10 AC1 10 HOH C . ? HOH A 1433 . ? 1_555 ? # _atom_sites.entry_id 4NYX _atom_sites.fract_transf_matrix[1][1] 0.024971 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003384 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029105 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011097 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1079 ? ? ? A . n A 1 2 MET 2 1080 ? ? ? A . n A 1 3 ARG 3 1081 ? ? ? A . n A 1 4 LYS 4 1082 1082 LYS LYS A . n A 1 5 LYS 5 1083 1083 LYS LYS A . n A 1 6 ILE 6 1084 1084 ILE ILE A . n A 1 7 PHE 7 1085 1085 PHE PHE A . n A 1 8 LYS 8 1086 1086 LYS LYS A . n A 1 9 PRO 9 1087 1087 PRO PRO A . n A 1 10 GLU 10 1088 1088 GLU GLU A . n A 1 11 GLU 11 1089 1089 GLU GLU A . n A 1 12 LEU 12 1090 1090 LEU LEU A . n A 1 13 ARG 13 1091 1091 ARG ARG A . n A 1 14 GLN 14 1092 1092 GLN GLN A . n A 1 15 ALA 15 1093 1093 ALA ALA A . n A 1 16 LEU 16 1094 1094 LEU LEU A . n A 1 17 MET 17 1095 1095 MET MET A . n A 1 18 PRO 18 1096 1096 PRO PRO A . n A 1 19 THR 19 1097 1097 THR THR A . n A 1 20 LEU 20 1098 1098 LEU LEU A . n A 1 21 GLU 21 1099 1099 GLU GLU A . n A 1 22 ALA 22 1100 1100 ALA ALA A . n A 1 23 LEU 23 1101 1101 LEU LEU A . n A 1 24 TYR 24 1102 1102 TYR TYR A . n A 1 25 ARG 25 1103 1103 ARG ARG A . n A 1 26 GLN 26 1104 1104 GLN GLN A . n A 1 27 ASP 27 1105 1105 ASP ASP A . n A 1 28 PRO 28 1106 1106 PRO PRO A . n A 1 29 GLU 29 1107 1107 GLU GLU A . n A 1 30 SER 30 1108 1108 SER SER A . n A 1 31 LEU 31 1109 1109 LEU LEU A . n A 1 32 PRO 32 1110 1110 PRO PRO A . n A 1 33 PHE 33 1111 1111 PHE PHE A . n A 1 34 ARG 34 1112 1112 ARG ARG A . n A 1 35 GLN 35 1113 1113 GLN GLN A . n A 1 36 PRO 36 1114 1114 PRO PRO A . n A 1 37 VAL 37 1115 1115 VAL VAL A . n A 1 38 ASP 38 1116 1116 ASP ASP A . n A 1 39 PRO 39 1117 1117 PRO PRO A . n A 1 40 GLN 40 1118 1118 GLN GLN A . n A 1 41 LEU 41 1119 1119 LEU LEU A . n A 1 42 LEU 42 1120 1120 LEU LEU A . n A 1 43 GLY 43 1121 1121 GLY GLY A . n A 1 44 ILE 44 1122 1122 ILE ILE A . n A 1 45 PRO 45 1123 1123 PRO PRO A . n A 1 46 ASP 46 1124 1124 ASP ASP A . n A 1 47 TYR 47 1125 1125 TYR TYR A . n A 1 48 PHE 48 1126 1126 PHE PHE A . n A 1 49 ASP 49 1127 1127 ASP ASP A . n A 1 50 ILE 50 1128 1128 ILE ILE A . n A 1 51 VAL 51 1129 1129 VAL VAL A . n A 1 52 LYS 52 1130 1130 LYS LYS A . n A 1 53 ASN 53 1131 1131 ASN ASN A . n A 1 54 PRO 54 1132 1132 PRO PRO A . n A 1 55 MET 55 1133 1133 MET MET A . n A 1 56 ASP 56 1134 1134 ASP ASP A . n A 1 57 LEU 57 1135 1135 LEU LEU A . n A 1 58 SER 58 1136 1136 SER SER A . n A 1 59 THR 59 1137 1137 THR THR A . n A 1 60 ILE 60 1138 1138 ILE ILE A . n A 1 61 LYS 61 1139 1139 LYS LYS A . n A 1 62 ARG 62 1140 1140 ARG ARG A . n A 1 63 LYS 63 1141 1141 LYS LYS A . n A 1 64 LEU 64 1142 1142 LEU LEU A . n A 1 65 ASP 65 1143 1143 ASP ASP A . n A 1 66 THR 66 1144 1144 THR THR A . n A 1 67 GLY 67 1145 1145 GLY GLY A . n A 1 68 GLN 68 1146 1146 GLN GLN A . n A 1 69 TYR 69 1147 1147 TYR TYR A . n A 1 70 GLN 70 1148 1148 GLN GLN A . n A 1 71 GLU 71 1149 1149 GLU GLU A . n A 1 72 PRO 72 1150 1150 PRO PRO A . n A 1 73 TRP 73 1151 1151 TRP TRP A . n A 1 74 GLN 74 1152 1152 GLN GLN A . n A 1 75 TYR 75 1153 1153 TYR TYR A . n A 1 76 VAL 76 1154 1154 VAL VAL A . n A 1 77 ASP 77 1155 1155 ASP ASP A . n A 1 78 ASP 78 1156 1156 ASP ASP A . n A 1 79 VAL 79 1157 1157 VAL VAL A . n A 1 80 TRP 80 1158 1158 TRP TRP A . n A 1 81 LEU 81 1159 1159 LEU LEU A . n A 1 82 MET 82 1160 1160 MET MET A . n A 1 83 PHE 83 1161 1161 PHE PHE A . n A 1 84 ASN 84 1162 1162 ASN ASN A . n A 1 85 ASN 85 1163 1163 ASN ASN A . n A 1 86 ALA 86 1164 1164 ALA ALA A . n A 1 87 TRP 87 1165 1165 TRP TRP A . n A 1 88 LEU 88 1166 1166 LEU LEU A . n A 1 89 TYR 89 1167 1167 TYR TYR A . n A 1 90 ASN 90 1168 1168 ASN ASN A . n A 1 91 ARG 91 1169 1169 ARG ARG A . n A 1 92 LYS 92 1170 1170 LYS LYS A . n A 1 93 THR 93 1171 1171 THR THR A . n A 1 94 SER 94 1172 1172 SER SER A . n A 1 95 ARG 95 1173 1173 ARG ARG A . n A 1 96 VAL 96 1174 1174 VAL VAL A . n A 1 97 TYR 97 1175 1175 TYR TYR A . n A 1 98 LYS 98 1176 1176 LYS LYS A . n A 1 99 PHE 99 1177 1177 PHE PHE A . n A 1 100 CYS 100 1178 1178 CYS CYS A . n A 1 101 SER 101 1179 1179 SER SER A . n A 1 102 LYS 102 1180 1180 LYS LYS A . n A 1 103 LEU 103 1181 1181 LEU LEU A . n A 1 104 ALA 104 1182 1182 ALA ALA A . n A 1 105 GLU 105 1183 1183 GLU GLU A . n A 1 106 VAL 106 1184 1184 VAL VAL A . n A 1 107 PHE 107 1185 1185 PHE PHE A . n A 1 108 GLU 108 1186 1186 GLU GLU A . n A 1 109 GLN 109 1187 1187 GLN GLN A . n A 1 110 GLU 110 1188 1188 GLU GLU A . n A 1 111 ILE 111 1189 1189 ILE ILE A . n A 1 112 ASP 112 1190 1190 ASP ASP A . n A 1 113 PRO 113 1191 1191 PRO PRO A . n A 1 114 VAL 114 1192 1192 VAL VAL A . n A 1 115 MET 115 1193 1193 MET MET A . n A 1 116 GLN 116 1194 1194 GLN GLN A . n A 1 117 SER 117 1195 1195 SER SER A . n A 1 118 LEU 118 1196 1196 LEU LEU A . n A 1 119 GLY 119 1197 1197 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2O4 1 1201 1 2O4 DRG A . C 3 HOH 1 1301 1 HOH HOH A . C 3 HOH 2 1302 3 HOH HOH A . C 3 HOH 3 1303 4 HOH HOH A . C 3 HOH 4 1304 5 HOH HOH A . C 3 HOH 5 1305 6 HOH HOH A . C 3 HOH 6 1306 7 HOH HOH A . C 3 HOH 7 1307 9 HOH HOH A . C 3 HOH 8 1308 10 HOH HOH A . C 3 HOH 9 1309 11 HOH HOH A . C 3 HOH 10 1310 12 HOH HOH A . C 3 HOH 11 1311 14 HOH HOH A . C 3 HOH 12 1312 15 HOH HOH A . C 3 HOH 13 1313 17 HOH HOH A . C 3 HOH 14 1314 18 HOH HOH A . C 3 HOH 15 1315 19 HOH HOH A . C 3 HOH 16 1316 21 HOH HOH A . C 3 HOH 17 1317 22 HOH HOH A . C 3 HOH 18 1318 23 HOH HOH A . C 3 HOH 19 1319 24 HOH HOH A . C 3 HOH 20 1320 26 HOH HOH A . C 3 HOH 21 1321 27 HOH HOH A . C 3 HOH 22 1322 28 HOH HOH A . C 3 HOH 23 1323 29 HOH HOH A . C 3 HOH 24 1324 30 HOH HOH A . C 3 HOH 25 1325 31 HOH HOH A . C 3 HOH 26 1326 32 HOH HOH A . C 3 HOH 27 1327 33 HOH HOH A . C 3 HOH 28 1328 34 HOH HOH A . C 3 HOH 29 1329 35 HOH HOH A . C 3 HOH 30 1330 36 HOH HOH A . C 3 HOH 31 1331 37 HOH HOH A . C 3 HOH 32 1332 38 HOH HOH A . C 3 HOH 33 1333 40 HOH HOH A . C 3 HOH 34 1334 41 HOH HOH A . C 3 HOH 35 1335 42 HOH HOH A . C 3 HOH 36 1336 43 HOH HOH A . C 3 HOH 37 1337 44 HOH HOH A . C 3 HOH 38 1338 45 HOH HOH A . C 3 HOH 39 1339 46 HOH HOH A . C 3 HOH 40 1340 47 HOH HOH A . C 3 HOH 41 1341 48 HOH HOH A . C 3 HOH 42 1342 49 HOH HOH A . C 3 HOH 43 1343 50 HOH HOH A . C 3 HOH 44 1344 51 HOH HOH A . C 3 HOH 45 1345 52 HOH HOH A . C 3 HOH 46 1346 53 HOH HOH A . C 3 HOH 47 1347 54 HOH HOH A . C 3 HOH 48 1348 55 HOH HOH A . C 3 HOH 49 1349 58 HOH HOH A . C 3 HOH 50 1350 59 HOH HOH A . C 3 HOH 51 1351 62 HOH HOH A . C 3 HOH 52 1352 63 HOH HOH A . C 3 HOH 53 1353 70 HOH HOH A . C 3 HOH 54 1354 73 HOH HOH A . C 3 HOH 55 1355 74 HOH HOH A . C 3 HOH 56 1356 75 HOH HOH A . C 3 HOH 57 1357 76 HOH HOH A . C 3 HOH 58 1358 77 HOH HOH A . C 3 HOH 59 1359 78 HOH HOH A . C 3 HOH 60 1360 79 HOH HOH A . C 3 HOH 61 1361 80 HOH HOH A . C 3 HOH 62 1362 82 HOH HOH A . C 3 HOH 63 1363 83 HOH HOH A . C 3 HOH 64 1364 84 HOH HOH A . C 3 HOH 65 1365 85 HOH HOH A . C 3 HOH 66 1366 87 HOH HOH A . C 3 HOH 67 1367 88 HOH HOH A . C 3 HOH 68 1368 89 HOH HOH A . C 3 HOH 69 1369 91 HOH HOH A . C 3 HOH 70 1370 92 HOH HOH A . C 3 HOH 71 1371 93 HOH HOH A . C 3 HOH 72 1372 95 HOH HOH A . C 3 HOH 73 1373 98 HOH HOH A . C 3 HOH 74 1374 99 HOH HOH A . C 3 HOH 75 1375 100 HOH HOH A . C 3 HOH 76 1376 101 HOH HOH A . C 3 HOH 77 1377 102 HOH HOH A . C 3 HOH 78 1378 103 HOH HOH A . C 3 HOH 79 1379 104 HOH HOH A . C 3 HOH 80 1380 105 HOH HOH A . C 3 HOH 81 1381 106 HOH HOH A . C 3 HOH 82 1382 108 HOH HOH A . C 3 HOH 83 1383 110 HOH HOH A . C 3 HOH 84 1384 111 HOH HOH A . C 3 HOH 85 1385 112 HOH HOH A . C 3 HOH 86 1386 113 HOH HOH A . C 3 HOH 87 1387 114 HOH HOH A . C 3 HOH 88 1388 116 HOH HOH A . C 3 HOH 89 1389 118 HOH HOH A . C 3 HOH 90 1390 120 HOH HOH A . C 3 HOH 91 1391 121 HOH HOH A . C 3 HOH 92 1392 125 HOH HOH A . C 3 HOH 93 1393 126 HOH HOH A . C 3 HOH 94 1394 127 HOH HOH A . C 3 HOH 95 1395 128 HOH HOH A . C 3 HOH 96 1396 129 HOH HOH A . C 3 HOH 97 1397 130 HOH HOH A . C 3 HOH 98 1398 131 HOH HOH A . C 3 HOH 99 1399 132 HOH HOH A . C 3 HOH 100 1400 133 HOH HOH A . C 3 HOH 101 1401 134 HOH HOH A . C 3 HOH 102 1402 135 HOH HOH A . C 3 HOH 103 1403 136 HOH HOH A . C 3 HOH 104 1404 137 HOH HOH A . C 3 HOH 105 1405 138 HOH HOH A . C 3 HOH 106 1406 139 HOH HOH A . C 3 HOH 107 1407 140 HOH HOH A . C 3 HOH 108 1408 141 HOH HOH A . C 3 HOH 109 1409 142 HOH HOH A . C 3 HOH 110 1410 143 HOH HOH A . C 3 HOH 111 1411 144 HOH HOH A . C 3 HOH 112 1412 145 HOH HOH A . C 3 HOH 113 1413 146 HOH HOH A . C 3 HOH 114 1414 147 HOH HOH A . C 3 HOH 115 1415 149 HOH HOH A . C 3 HOH 116 1416 150 HOH HOH A . C 3 HOH 117 1417 154 HOH HOH A . C 3 HOH 118 1418 155 HOH HOH A . C 3 HOH 119 1419 157 HOH HOH A . C 3 HOH 120 1420 158 HOH HOH A . C 3 HOH 121 1421 160 HOH HOH A . C 3 HOH 122 1422 161 HOH HOH A . C 3 HOH 123 1423 162 HOH HOH A . C 3 HOH 124 1424 163 HOH HOH A . C 3 HOH 125 1425 164 HOH HOH A . C 3 HOH 126 1426 166 HOH HOH A . C 3 HOH 127 1427 167 HOH HOH A . C 3 HOH 128 1428 168 HOH HOH A . C 3 HOH 129 1429 169 HOH HOH A . C 3 HOH 130 1430 170 HOH HOH A . C 3 HOH 131 1431 171 HOH HOH A . C 3 HOH 132 1432 172 HOH HOH A . C 3 HOH 133 1433 173 HOH HOH A . C 3 HOH 134 1434 174 HOH HOH A . C 3 HOH 135 1435 176 HOH HOH A . C 3 HOH 136 1436 177 HOH HOH A . C 3 HOH 137 1437 178 HOH HOH A . C 3 HOH 138 1438 179 HOH HOH A . C 3 HOH 139 1439 180 HOH HOH A . C 3 HOH 140 1440 181 HOH HOH A . C 3 HOH 141 1441 182 HOH HOH A . C 3 HOH 142 1442 183 HOH HOH A . C 3 HOH 143 1443 184 HOH HOH A . C 3 HOH 144 1444 185 HOH HOH A . C 3 HOH 145 1445 186 HOH HOH A . C 3 HOH 146 1446 187 HOH HOH A . C 3 HOH 147 1447 188 HOH HOH A . C 3 HOH 148 1448 189 HOH HOH A . C 3 HOH 149 1449 190 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-29 2 'Structure model' 1 1 2018-01-31 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation_author.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.100 _diffrn_reflns.pdbx_d_res_low 38.263 _diffrn_reflns.pdbx_number_obs 49269 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.022 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 13.20 _diffrn_reflns.pdbx_redundancy 3.10 _diffrn_reflns.pdbx_percent_possible_obs 98.60 _diffrn_reflns.number 152528 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.48 38.26 ? ? 0.018 0.018 ? 3.10 97.00 1 2.46 3.48 ? ? 0.017 0.017 ? 3.20 96.20 1 2.01 2.46 ? ? 0.020 0.020 ? 3.20 96.80 1 1.74 2.01 ? ? 0.025 0.025 ? 3.20 98.00 1 1.56 1.74 ? ? 0.030 0.030 ? 3.30 99.30 1 1.42 1.56 ? ? 0.039 0.039 ? 3.30 99.80 1 1.31 1.42 ? ? 0.052 0.052 ? 3.20 99.80 1 1.23 1.31 ? ? 0.065 0.065 ? 3.10 99.90 1 1.16 1.23 ? ? 0.082 0.082 ? 3.00 99.80 1 1.10 1.16 ? ? 0.105 0.105 ? 2.60 96.60 # _pdbx_phasing_MR.entry_id 4NYX _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 50.110 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 38.260 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 38.260 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.21 2013/01/04 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 DNA . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1373 ? ? O A HOH 1427 ? ? 1.83 2 1 O A HOH 1422 ? ? O A HOH 1427 ? ? 1.94 3 1 O A HOH 1410 ? ? O A HOH 1431 ? ? 2.15 4 1 O A HOH 1448 ? ? O A HOH 1449 ? ? 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 1103 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 1103 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 1103 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.26 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.96 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 1082 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 1083 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -48.40 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1082 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 1082 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 1082 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 1082 ? NZ ? A LYS 4 NZ 5 1 Y 1 A LYS 1083 ? CG ? A LYS 5 CG 6 1 Y 1 A LYS 1083 ? CD ? A LYS 5 CD 7 1 Y 1 A LYS 1083 ? CE ? A LYS 5 CE 8 1 Y 1 A LYS 1083 ? NZ ? A LYS 5 NZ 9 1 Y 1 A ILE 1084 ? CG1 ? A ILE 6 CG1 10 1 Y 1 A ILE 1084 ? CG2 ? A ILE 6 CG2 11 1 Y 1 A ILE 1084 ? CD1 ? A ILE 6 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1079 ? A SER 1 2 1 Y 1 A MET 1080 ? A MET 2 3 1 Y 1 A ARG 1081 ? A ARG 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2O4 C4 C Y N 1 2O4 C14 C N N 2 2O4 C5 C Y N 3 2O4 C6 C Y N 4 2O4 C11 C N N 5 2O4 C7 C Y N 6 2O4 C8 C N N 7 2O4 C9 C N N 8 2O4 C10 C N N 9 2O4 C12 C N N 10 2O4 C13 C N N 11 2O4 N1 N N N 12 2O4 N2 N N N 13 2O4 C3 C Y N 14 2O4 N3 N N N 15 2O4 O2 O N N 16 2O4 C2 C N N 17 2O4 N N N N 18 2O4 C22 C Y N 19 2O4 C1 C N R 20 2O4 C C N N 21 2O4 O1 O N N 22 2O4 C20 C Y N 23 2O4 C19 C Y N 24 2O4 C18 C Y N 25 2O4 O O N N 26 2O4 C21 C N N 27 2O4 C17 C Y N 28 2O4 C16 C Y N 29 2O4 C15 C Y N 30 2O4 H1 H N N 31 2O4 H2 H N N 32 2O4 H3 H N N 33 2O4 H4 H N N 34 2O4 H5 H N N 35 2O4 H6 H N N 36 2O4 H7 H N N 37 2O4 H8 H N N 38 2O4 H9 H N N 39 2O4 H10 H N N 40 2O4 H11 H N N 41 2O4 H12 H N N 42 2O4 H13 H N N 43 2O4 H14 H N N 44 2O4 H15 H N N 45 2O4 H16 H N N 46 2O4 H17 H N N 47 2O4 H18 H N N 48 2O4 H19 H N N 49 2O4 H20 H N N 50 2O4 H21 H N N 51 2O4 H22 H N N 52 2O4 H23 H N N 53 2O4 H24 H N N 54 2O4 H25 H N N 55 2O4 H26 H N N 56 2O4 H27 H N N 57 2O4 H28 H N N 58 ALA N N N N 59 ALA CA C N S 60 ALA C C N N 61 ALA O O N N 62 ALA CB C N N 63 ALA OXT O N N 64 ALA H H N N 65 ALA H2 H N N 66 ALA HA H N N 67 ALA HB1 H N N 68 ALA HB2 H N N 69 ALA HB3 H N N 70 ALA HXT H N N 71 ARG N N N N 72 ARG CA C N S 73 ARG C C N N 74 ARG O O N N 75 ARG CB C N N 76 ARG CG C N N 77 ARG CD C N N 78 ARG NE N N N 79 ARG CZ C N N 80 ARG NH1 N N N 81 ARG NH2 N N N 82 ARG OXT O N N 83 ARG H H N N 84 ARG H2 H N N 85 ARG HA H N N 86 ARG HB2 H N N 87 ARG HB3 H N N 88 ARG HG2 H N N 89 ARG HG3 H N N 90 ARG HD2 H N N 91 ARG HD3 H N N 92 ARG HE H N N 93 ARG HH11 H N N 94 ARG HH12 H N N 95 ARG HH21 H N N 96 ARG HH22 H N N 97 ARG HXT H N N 98 ASN N N N N 99 ASN CA C N S 100 ASN C C N N 101 ASN O O N N 102 ASN CB C N N 103 ASN CG C N N 104 ASN OD1 O N N 105 ASN ND2 N N N 106 ASN OXT O N N 107 ASN H H N N 108 ASN H2 H N N 109 ASN HA H N N 110 ASN HB2 H N N 111 ASN HB3 H N N 112 ASN HD21 H N N 113 ASN HD22 H N N 114 ASN HXT H N N 115 ASP N N N N 116 ASP CA C N S 117 ASP C C N N 118 ASP O O N N 119 ASP CB C N N 120 ASP CG C N N 121 ASP OD1 O N N 122 ASP OD2 O N N 123 ASP OXT O N N 124 ASP H H N N 125 ASP H2 H N N 126 ASP HA H N N 127 ASP HB2 H N N 128 ASP HB3 H N N 129 ASP HD2 H N N 130 ASP HXT H N N 131 CYS N N N N 132 CYS CA C N R 133 CYS C C N N 134 CYS O O N N 135 CYS CB C N N 136 CYS SG S N N 137 CYS OXT O N N 138 CYS H H N N 139 CYS H2 H N N 140 CYS HA H N N 141 CYS HB2 H N N 142 CYS HB3 H N N 143 CYS HG H N N 144 CYS HXT H N N 145 GLN N N N N 146 GLN CA C N S 147 GLN C C N N 148 GLN O O N N 149 GLN CB C N N 150 GLN CG C N N 151 GLN CD C N N 152 GLN OE1 O N N 153 GLN NE2 N N N 154 GLN OXT O N N 155 GLN H H N N 156 GLN H2 H N N 157 GLN HA H N N 158 GLN HB2 H N N 159 GLN HB3 H N N 160 GLN HG2 H N N 161 GLN HG3 H N N 162 GLN HE21 H N N 163 GLN HE22 H N N 164 GLN HXT H N N 165 GLU N N N N 166 GLU CA C N S 167 GLU C C N N 168 GLU O O N N 169 GLU CB C N N 170 GLU CG C N N 171 GLU CD C N N 172 GLU OE1 O N N 173 GLU OE2 O N N 174 GLU OXT O N N 175 GLU H H N N 176 GLU H2 H N N 177 GLU HA H N N 178 GLU HB2 H N N 179 GLU HB3 H N N 180 GLU HG2 H N N 181 GLU HG3 H N N 182 GLU HE2 H N N 183 GLU HXT H N N 184 GLY N N N N 185 GLY CA C N N 186 GLY C C N N 187 GLY O O N N 188 GLY OXT O N N 189 GLY H H N N 190 GLY H2 H N N 191 GLY HA2 H N N 192 GLY HA3 H N N 193 GLY HXT H N N 194 HOH O O N N 195 HOH H1 H N N 196 HOH H2 H N N 197 ILE N N N N 198 ILE CA C N S 199 ILE C C N N 200 ILE O O N N 201 ILE CB C N S 202 ILE CG1 C N N 203 ILE CG2 C N N 204 ILE CD1 C N N 205 ILE OXT O N N 206 ILE H H N N 207 ILE H2 H N N 208 ILE HA H N N 209 ILE HB H N N 210 ILE HG12 H N N 211 ILE HG13 H N N 212 ILE HG21 H N N 213 ILE HG22 H N N 214 ILE HG23 H N N 215 ILE HD11 H N N 216 ILE HD12 H N N 217 ILE HD13 H N N 218 ILE HXT H N N 219 LEU N N N N 220 LEU CA C N S 221 LEU C C N N 222 LEU O O N N 223 LEU CB C N N 224 LEU CG C N N 225 LEU CD1 C N N 226 LEU CD2 C N N 227 LEU OXT O N N 228 LEU H H N N 229 LEU H2 H N N 230 LEU HA H N N 231 LEU HB2 H N N 232 LEU HB3 H N N 233 LEU HG H N N 234 LEU HD11 H N N 235 LEU HD12 H N N 236 LEU HD13 H N N 237 LEU HD21 H N N 238 LEU HD22 H N N 239 LEU HD23 H N N 240 LEU HXT H N N 241 LYS N N N N 242 LYS CA C N S 243 LYS C C N N 244 LYS O O N N 245 LYS CB C N N 246 LYS CG C N N 247 LYS CD C N N 248 LYS CE C N N 249 LYS NZ N N N 250 LYS OXT O N N 251 LYS H H N N 252 LYS H2 H N N 253 LYS HA H N N 254 LYS HB2 H N N 255 LYS HB3 H N N 256 LYS HG2 H N N 257 LYS HG3 H N N 258 LYS HD2 H N N 259 LYS HD3 H N N 260 LYS HE2 H N N 261 LYS HE3 H N N 262 LYS HZ1 H N N 263 LYS HZ2 H N N 264 LYS HZ3 H N N 265 LYS HXT H N N 266 MET N N N N 267 MET CA C N S 268 MET C C N N 269 MET O O N N 270 MET CB C N N 271 MET CG C N N 272 MET SD S N N 273 MET CE C N N 274 MET OXT O N N 275 MET H H N N 276 MET H2 H N N 277 MET HA H N N 278 MET HB2 H N N 279 MET HB3 H N N 280 MET HG2 H N N 281 MET HG3 H N N 282 MET HE1 H N N 283 MET HE2 H N N 284 MET HE3 H N N 285 MET HXT H N N 286 PHE N N N N 287 PHE CA C N S 288 PHE C C N N 289 PHE O O N N 290 PHE CB C N N 291 PHE CG C Y N 292 PHE CD1 C Y N 293 PHE CD2 C Y N 294 PHE CE1 C Y N 295 PHE CE2 C Y N 296 PHE CZ C Y N 297 PHE OXT O N N 298 PHE H H N N 299 PHE H2 H N N 300 PHE HA H N N 301 PHE HB2 H N N 302 PHE HB3 H N N 303 PHE HD1 H N N 304 PHE HD2 H N N 305 PHE HE1 H N N 306 PHE HE2 H N N 307 PHE HZ H N N 308 PHE HXT H N N 309 PRO N N N N 310 PRO CA C N S 311 PRO C C N N 312 PRO O O N N 313 PRO CB C N N 314 PRO CG C N N 315 PRO CD C N N 316 PRO OXT O N N 317 PRO H H N N 318 PRO HA H N N 319 PRO HB2 H N N 320 PRO HB3 H N N 321 PRO HG2 H N N 322 PRO HG3 H N N 323 PRO HD2 H N N 324 PRO HD3 H N N 325 PRO HXT H N N 326 SER N N N N 327 SER CA C N S 328 SER C C N N 329 SER O O N N 330 SER CB C N N 331 SER OG O N N 332 SER OXT O N N 333 SER H H N N 334 SER H2 H N N 335 SER HA H N N 336 SER HB2 H N N 337 SER HB3 H N N 338 SER HG H N N 339 SER HXT H N N 340 THR N N N N 341 THR CA C N S 342 THR C C N N 343 THR O O N N 344 THR CB C N R 345 THR OG1 O N N 346 THR CG2 C N N 347 THR OXT O N N 348 THR H H N N 349 THR H2 H N N 350 THR HA H N N 351 THR HB H N N 352 THR HG1 H N N 353 THR HG21 H N N 354 THR HG22 H N N 355 THR HG23 H N N 356 THR HXT H N N 357 TRP N N N N 358 TRP CA C N S 359 TRP C C N N 360 TRP O O N N 361 TRP CB C N N 362 TRP CG C Y N 363 TRP CD1 C Y N 364 TRP CD2 C Y N 365 TRP NE1 N Y N 366 TRP CE2 C Y N 367 TRP CE3 C Y N 368 TRP CZ2 C Y N 369 TRP CZ3 C Y N 370 TRP CH2 C Y N 371 TRP OXT O N N 372 TRP H H N N 373 TRP H2 H N N 374 TRP HA H N N 375 TRP HB2 H N N 376 TRP HB3 H N N 377 TRP HD1 H N N 378 TRP HE1 H N N 379 TRP HE3 H N N 380 TRP HZ2 H N N 381 TRP HZ3 H N N 382 TRP HH2 H N N 383 TRP HXT H N N 384 TYR N N N N 385 TYR CA C N S 386 TYR C C N N 387 TYR O O N N 388 TYR CB C N N 389 TYR CG C Y N 390 TYR CD1 C Y N 391 TYR CD2 C Y N 392 TYR CE1 C Y N 393 TYR CE2 C Y N 394 TYR CZ C Y N 395 TYR OH O N N 396 TYR OXT O N N 397 TYR H H N N 398 TYR H2 H N N 399 TYR HA H N N 400 TYR HB2 H N N 401 TYR HB3 H N N 402 TYR HD1 H N N 403 TYR HD2 H N N 404 TYR HE1 H N N 405 TYR HE2 H N N 406 TYR HH H N N 407 TYR HXT H N N 408 VAL N N N N 409 VAL CA C N S 410 VAL C C N N 411 VAL O O N N 412 VAL CB C N N 413 VAL CG1 C N N 414 VAL CG2 C N N 415 VAL OXT O N N 416 VAL H H N N 417 VAL H2 H N N 418 VAL HA H N N 419 VAL HB H N N 420 VAL HG11 H N N 421 VAL HG12 H N N 422 VAL HG13 H N N 423 VAL HG21 H N N 424 VAL HG22 H N N 425 VAL HG23 H N N 426 VAL HXT H N N 427 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2O4 C9 N1 sing N N 1 2O4 C9 C10 sing N N 2 2O4 N1 C8 sing N N 3 2O4 O1 C8 doub N N 4 2O4 C8 C7 sing N N 5 2O4 C7 C6 doub Y N 6 2O4 C7 C22 sing Y N 7 2O4 C1 C sing N N 8 2O4 C1 N3 sing N N 9 2O4 C1 C2 sing N N 10 2O4 C6 C5 sing Y N 11 2O4 C10 C11 sing N N 12 2O4 C22 N3 sing N N 13 2O4 C22 C3 doub Y N 14 2O4 C5 C4 doub Y N 15 2O4 C11 N2 sing N N 16 2O4 C3 C4 sing Y N 17 2O4 C3 N sing N N 18 2O4 C2 N sing N N 19 2O4 C2 O2 doub N N 20 2O4 C12 N2 sing N N 21 2O4 C12 C13 sing N N 22 2O4 N2 C20 sing N N 23 2O4 C13 C14 sing N N 24 2O4 C20 C19 doub Y N 25 2O4 C20 C15 sing Y N 26 2O4 C19 C18 sing Y N 27 2O4 C21 O sing N N 28 2O4 C14 C15 sing N N 29 2O4 C15 C16 doub Y N 30 2O4 C18 O sing N N 31 2O4 C18 C17 doub Y N 32 2O4 C16 C17 sing Y N 33 2O4 C4 H1 sing N N 34 2O4 C14 H2 sing N N 35 2O4 C14 H3 sing N N 36 2O4 C5 H4 sing N N 37 2O4 C6 H5 sing N N 38 2O4 C11 H6 sing N N 39 2O4 C11 H7 sing N N 40 2O4 C9 H8 sing N N 41 2O4 C9 H9 sing N N 42 2O4 C10 H10 sing N N 43 2O4 C10 H11 sing N N 44 2O4 C12 H12 sing N N 45 2O4 C12 H13 sing N N 46 2O4 C13 H14 sing N N 47 2O4 C13 H15 sing N N 48 2O4 N1 H16 sing N N 49 2O4 N3 H17 sing N N 50 2O4 N H18 sing N N 51 2O4 C1 H19 sing N N 52 2O4 C H20 sing N N 53 2O4 C H21 sing N N 54 2O4 C H22 sing N N 55 2O4 C19 H23 sing N N 56 2O4 C21 H24 sing N N 57 2O4 C21 H25 sing N N 58 2O4 C21 H26 sing N N 59 2O4 C17 H27 sing N N 60 2O4 C16 H28 sing N N 61 ALA N CA sing N N 62 ALA N H sing N N 63 ALA N H2 sing N N 64 ALA CA C sing N N 65 ALA CA CB sing N N 66 ALA CA HA sing N N 67 ALA C O doub N N 68 ALA C OXT sing N N 69 ALA CB HB1 sing N N 70 ALA CB HB2 sing N N 71 ALA CB HB3 sing N N 72 ALA OXT HXT sing N N 73 ARG N CA sing N N 74 ARG N H sing N N 75 ARG N H2 sing N N 76 ARG CA C sing N N 77 ARG CA CB sing N N 78 ARG CA HA sing N N 79 ARG C O doub N N 80 ARG C OXT sing N N 81 ARG CB CG sing N N 82 ARG CB HB2 sing N N 83 ARG CB HB3 sing N N 84 ARG CG CD sing N N 85 ARG CG HG2 sing N N 86 ARG CG HG3 sing N N 87 ARG CD NE sing N N 88 ARG CD HD2 sing N N 89 ARG CD HD3 sing N N 90 ARG NE CZ sing N N 91 ARG NE HE sing N N 92 ARG CZ NH1 sing N N 93 ARG CZ NH2 doub N N 94 ARG NH1 HH11 sing N N 95 ARG NH1 HH12 sing N N 96 ARG NH2 HH21 sing N N 97 ARG NH2 HH22 sing N N 98 ARG OXT HXT sing N N 99 ASN N CA sing N N 100 ASN N H sing N N 101 ASN N H2 sing N N 102 ASN CA C sing N N 103 ASN CA CB sing N N 104 ASN CA HA sing N N 105 ASN C O doub N N 106 ASN C OXT sing N N 107 ASN CB CG sing N N 108 ASN CB HB2 sing N N 109 ASN CB HB3 sing N N 110 ASN CG OD1 doub N N 111 ASN CG ND2 sing N N 112 ASN ND2 HD21 sing N N 113 ASN ND2 HD22 sing N N 114 ASN OXT HXT sing N N 115 ASP N CA sing N N 116 ASP N H sing N N 117 ASP N H2 sing N N 118 ASP CA C sing N N 119 ASP CA CB sing N N 120 ASP CA HA sing N N 121 ASP C O doub N N 122 ASP C OXT sing N N 123 ASP CB CG sing N N 124 ASP CB HB2 sing N N 125 ASP CB HB3 sing N N 126 ASP CG OD1 doub N N 127 ASP CG OD2 sing N N 128 ASP OD2 HD2 sing N N 129 ASP OXT HXT sing N N 130 CYS N CA sing N N 131 CYS N H sing N N 132 CYS N H2 sing N N 133 CYS CA C sing N N 134 CYS CA CB sing N N 135 CYS CA HA sing N N 136 CYS C O doub N N 137 CYS C OXT sing N N 138 CYS CB SG sing N N 139 CYS CB HB2 sing N N 140 CYS CB HB3 sing N N 141 CYS SG HG sing N N 142 CYS OXT HXT sing N N 143 GLN N CA sing N N 144 GLN N H sing N N 145 GLN N H2 sing N N 146 GLN CA C sing N N 147 GLN CA CB sing N N 148 GLN CA HA sing N N 149 GLN C O doub N N 150 GLN C OXT sing N N 151 GLN CB CG sing N N 152 GLN CB HB2 sing N N 153 GLN CB HB3 sing N N 154 GLN CG CD sing N N 155 GLN CG HG2 sing N N 156 GLN CG HG3 sing N N 157 GLN CD OE1 doub N N 158 GLN CD NE2 sing N N 159 GLN NE2 HE21 sing N N 160 GLN NE2 HE22 sing N N 161 GLN OXT HXT sing N N 162 GLU N CA sing N N 163 GLU N H sing N N 164 GLU N H2 sing N N 165 GLU CA C sing N N 166 GLU CA CB sing N N 167 GLU CA HA sing N N 168 GLU C O doub N N 169 GLU C OXT sing N N 170 GLU CB CG sing N N 171 GLU CB HB2 sing N N 172 GLU CB HB3 sing N N 173 GLU CG CD sing N N 174 GLU CG HG2 sing N N 175 GLU CG HG3 sing N N 176 GLU CD OE1 doub N N 177 GLU CD OE2 sing N N 178 GLU OE2 HE2 sing N N 179 GLU OXT HXT sing N N 180 GLY N CA sing N N 181 GLY N H sing N N 182 GLY N H2 sing N N 183 GLY CA C sing N N 184 GLY CA HA2 sing N N 185 GLY CA HA3 sing N N 186 GLY C O doub N N 187 GLY C OXT sing N N 188 GLY OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(3R)-N-[3-(7-methoxy-3,4-dihydroquinolin-1(2H)-yl)propyl]-3-methyl-2-oxo-1,2,3,4-tetrahydroquinoxaline-5-carboxamide' 2O4 3 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 3DAI 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 2 ? 'experimental model' PDB 3HMH 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 3 ? 'experimental model' PDB 2GRC 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 4 ? 'experimental model' PDB 2OO1 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 5 ? 'experimental model' PDB 2OSS 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 6 ? 'experimental model' PDB 2OUO 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 7 ? 'experimental model' PDB 3D7C 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' 8 ? 'experimental model' PDB 3DWY 'Ensemble of PDB entries 3DAI, 3HMH, 2GRC, 2OO1, 2OSS, 2OUO, 3D7C, and 3DWY' #