HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-DEC-13 4NZK TITLE CRYSTAL STRUCTURE OF A DHHW FAMILY PROTEIN (EUBSIR_00411) FROM TITLE 2 EUBACTERIUM SIRAEUM DSM 15702 AT 1.49 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM SIRAEUM; SOURCE 3 ORGANISM_TAXID: 428128; SOURCE 4 STRAIN: DSM 15702; SOURCE 5 GENE: EUBSIR_00411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DHHW PROTEIN, PF14286 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4NZK 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4NZK 1 JRNL REVDAT 3 22-NOV-17 4NZK 1 REMARK REVDAT 2 24-DEC-14 4NZK 1 TITLE REVDAT 1 15-JAN-14 4NZK 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (EUBSIR_00411) JRNL TITL 2 FROM EUBACTERIUM SIRAEUM DSM 15702 AT 1.49 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2609 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2363 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3576 ; 1.653 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5468 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 5.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;32.809 ;24.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;11.400 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3060 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1259 ; 2.208 ; 3.054 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1258 ; 2.202 ; 3.049 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 2.600 ; 5.754 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4972 ; 3.424 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 126 ;27.121 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5144 ; 9.651 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT REMARK 3 SOLUTION SOLUTION HAS BEEN MODELED IN THE SOLVENT STRUCTURE. 4.N- REMARK 3 TERMINAL RESIDUES 34-81 ARE DISORDERED AND ARE EXCLUDED FROM THE REMARK 3 MODEL. 5.AN UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED INTO REMARK 3 ELECTRON DENSITY AT THE PUTATIVE ACTIVE SITE BOUND TO CYS365 AND REMARK 3 HIS194. THE VICINITY INCLUDES ADDITIONAL UNMODELED ELECTRON REMARK 3 DENSITY THAT MAY BE A PORTION OF SOME ENDOGENOUS SUBSTRATE. REMARK 4 REMARK 4 4NZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918401,0.979346,0.979261 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 29.481 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.01500 REMARK 200 R SYM FOR SHELL (I) : 1.48200 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M SODIUM IODIDE, 20.0% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.10367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.20733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.65550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.75917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.55183 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.10367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.20733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.75917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.65550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.55183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 694 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 777 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 817 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 THR A 33 REMARK 465 ASP A 34 REMARK 465 SER A 35 REMARK 465 LYS A 36 REMARK 465 ASN A 37 REMARK 465 GLU A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 THR A 42 REMARK 465 GLU A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 GLU A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 ASN A 52 REMARK 465 THR A 53 REMARK 465 LYS A 54 REMARK 465 SER A 55 REMARK 465 ASP A 56 REMARK 465 THR A 57 REMARK 465 THR A 58 REMARK 465 SER A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 ALA A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 SER A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 ASN A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 148 CD OE1 OE2 REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 LYS A 223 CE NZ REMARK 470 GLU A 273 CD OE1 OE2 REMARK 470 LYS A 384 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 365 O1 UNL A 404 1.84 REMARK 500 NE2 HIS A 194 O2 UNL A 404 2.07 REMARK 500 NE2 HIS A 194 O1 UNL A 404 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 218 CG GLU A 218 CD 0.122 REMARK 500 GLU A 218 CD GLU A 218 OE1 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 211 CA - CB - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 MSE A 211 CG - SE - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU A 218 CG - CD - OE1 ANGL. DEV. = 20.9 DEGREES REMARK 500 GLU A 218 CG - CD - OE2 ANGL. DEV. = -15.5 DEGREES REMARK 500 MSE A 364 CG - SE - CE ANGL. DEV. = -14.4 DEGREES REMARK 500 MSE A 364 CG - SE - CE ANGL. DEV. = 21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420664 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 33-384) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4NZK A 33 384 UNP B0MKR4 B0MKR4_9FIRM 33 384 SEQADV 4NZK GLY A 0 UNP B0MKR4 EXPRESSION TAG SEQRES 1 A 353 GLY THR ASP SER LYS ASN GLU SER SER LEU THR GLU SER SEQRES 2 A 353 SER ALA THR GLU SER LYS ASP ASN THR LYS SER ASP THR SEQRES 3 A 353 THR SER ASP ASN SER SER ALA SER SER GLU SER THR VAL SEQRES 4 A 353 SER SER ASP GLU SER SER SER GLU ASN LYS LYS PRO VAL SEQRES 5 A 353 GLY VAL ASP GLY VAL GLN THR ASN GLY GLN LEU VAL VAL SEQRES 6 A 353 ASP ILE ASP GLY HIS THR TRP GLY ILE SER LEU TYR GLY SEQRES 7 A 353 GLY GLY ASP GLY ALA ASN TYR ALA SER TYR LEU ASN GLU SEQRES 8 A 353 PHE LYS GLU LYS VAL GLY SER SER VAL ASN VAL PHE ASN SEQRES 9 A 353 MSE VAL VAL PRO THR ALA GLY ALA TYR TYR LEU PRO GLU SEQRES 10 A 353 GLY TYR GLU LYS TYR ASN ALA SER HIS ARG ASP SER ILE SEQRES 11 A 353 ASN SER ILE ALA ASN LYS LEU VAL ASN VAL ILE ASN VAL SEQRES 12 A 353 ASP GLY TYR ALA ALA LEU GLU ALA HIS THR ASN GLU TYR SEQRES 13 A 353 ILE TYR THR ARG THR ASP HIS HIS TRP GLU PRO LEU GLY SEQRES 14 A 353 ALA TYR TYR ALA ALA LYS ALA PHE CYS GLU MSE ALA GLN SEQRES 15 A 353 VAL PRO VAL LYS GLU LEU SER THR TYR LYS THR GLU THR SEQRES 16 A 353 ILE GLU GLY PHE VAL GLY THR MSE TYR ALA PHE THR GLU SEQRES 17 A 353 TYR ASN GLU ARG ILE LYS ASN ASP PRO ASP THR PHE THR SEQRES 18 A 353 TYR TYR ILE PRO SER THR ASP TYR THR ALA THR TYR TYR SEQRES 19 A 353 THR THR ASP PHE LYS ALA ASP GLU GLN PHE THR GLN PHE SEQRES 20 A 353 HIS SER ILE PHE VAL ASP GLN PRO ALA SER GLY ALA TYR SEQRES 21 A 353 SER THR PHE MSE GLY GLY ASP GLN LYS ILE VAL LYS ILE SEQRES 22 A 353 GLU THR ALA ASN LYS ASN GLY ARG LYS LEU CYS ILE PHE SEQRES 23 A 353 LYS ASP SER TYR GLY ASN ALA GLU VAL PRO PHE PHE ILE SEQRES 24 A 353 ASP SER PHE GLU GLU ILE TYR VAL CYS ASP ILE ARG TYR SEQRES 25 A 353 PHE ASP LEU TYR ALA PRO ASP PHE ILE LYS ASP ASN GLY SEQRES 26 A 353 ILE THR ASP VAL LEU PHE THR MSE CYS THR PHE SER ALA SEQRES 27 A 353 VAL GLY GLU ASN ALA GLU GLY ILE LYS ASN ASN LEU LEU SEQRES 28 A 353 SER LYS MODRES 4NZK MSE A 136 MET SELENOMETHIONINE MODRES 4NZK MSE A 211 MET SELENOMETHIONINE MODRES 4NZK MSE A 234 MET SELENOMETHIONINE MODRES 4NZK MSE A 295 MET SELENOMETHIONINE MODRES 4NZK MSE A 364 MET SELENOMETHIONINE HET MSE A 136 8 HET MSE A 211 18 HET MSE A 234 8 HET MSE A 295 13 HET MSE A 364 13 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET UNL A 404 2 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNL UNKNOWN LIGAND HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 EDO 3(C2 H6 O2) FORMUL 6 HOH *367(H2 O) HELIX 1 1 GLY A 113 GLY A 128 1 16 HELIX 2 2 ALA A 141 LEU A 146 1 6 HELIX 3 3 TYR A 150 ASN A 154 5 5 HELIX 4 4 SER A 156 LEU A 168 1 13 HELIX 5 5 ASP A 175 ALA A 182 1 8 HELIX 6 6 GLU A 197 ALA A 212 1 16 HELIX 7 7 GLU A 218 TYR A 222 5 5 HELIX 8 8 THR A 233 THR A 238 1 6 HELIX 9 9 ASN A 241 ASN A 246 1 6 HELIX 10 10 ASP A 272 THR A 276 5 5 HELIX 11 11 PRO A 286 PHE A 294 5 9 HELIX 12 12 SER A 320 ILE A 330 5 11 HELIX 13 13 TYR A 347 ASN A 355 1 9 HELIX 14 14 THR A 366 GLY A 371 1 6 HELIX 15 15 ALA A 374 ASN A 380 1 7 SHEET 1 A 3 GLY A 84 THR A 90 0 SHEET 2 A 3 GLN A 93 ILE A 98 -1 O VAL A 95 N VAL A 88 SHEET 3 A 3 HIS A 101 SER A 106 -1 O HIS A 101 N ILE A 98 SHEET 1 B 7 ILE A 172 ASN A 173 0 SHEET 2 B 7 ASN A 132 VAL A 138 1 N VAL A 133 O ILE A 172 SHEET 3 B 7 ASP A 359 CYS A 365 1 O VAL A 360 N PHE A 134 SHEET 4 B 7 LYS A 313 LYS A 318 1 N PHE A 317 O LEU A 361 SHEET 5 B 7 GLU A 335 ASP A 340 1 O TYR A 337 N ILE A 316 SHEET 6 B 7 ILE A 301 THR A 306 -1 N ILE A 304 O ILE A 336 SHEET 7 B 7 TYR A 260 TYR A 265 -1 N THR A 263 O LYS A 303 SHEET 1 C 2 LYS A 223 PHE A 230 0 SHEET 2 C 2 ASP A 249 ILE A 255 -1 O PHE A 251 N ILE A 227 LINK C ASN A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N VAL A 137 1555 1555 1.33 LINK C GLU A 210 N MSE A 211 1555 1555 1.34 LINK C MSE A 211 N ALA A 212 1555 1555 1.32 LINK C THR A 233 N MSE A 234 1555 1555 1.34 LINK C MSE A 234 N TYR A 235 1555 1555 1.33 LINK C PHE A 294 N MSE A 295 1555 1555 1.32 LINK C MSE A 295 N GLY A 296 1555 1555 1.34 LINK C THR A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N CYS A 365 1555 1555 1.33 SITE 1 AC1 7 MSE A 295 GLY A 297 ASP A 298 LYS A 300 SITE 2 AC1 7 LYS A 318 VAL A 338 ASP A 340 SITE 1 AC2 6 TYR A 264 PHE A 275 VAL A 283 GLY A 296 SITE 2 AC2 6 LYS A 300 HOH A 833 SITE 1 AC3 6 LEU A 107 GLY A 109 LYS A 167 HOH A 554 SITE 2 AC3 6 HOH A 643 HOH A 709 CRYST1 102.125 102.125 123.311 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009792 0.005653 0.000000 0.00000 SCALE2 0.000000 0.011307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008110 0.00000