HEADER HYDROLASE 13-DEC-13 4O0F TITLE CRYSTAL STRUCTURE OF THE HUMAN L-ASPARAGINASE PROTEIN T219A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOASPARTYL PEPTIDASE/L-ASPARAGINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARAGINASE-LIKE PROTEIN 1, BETA-ASPARTYL-PEPTIDASE, COMPND 5 ISOASPARTYL DIPEPTIDASE, L-ASPARAGINE AMIDOHYDROLASE, ISOASPARTYL COMPND 6 PEPTIDASE/L-ASPARAGINASE ALPHA CHAIN, ISOASPARTYL PEPTIDASE/L- COMPND 7 ASPARAGINASE BETA CHAIN; COMPND 8 EC: 3.4.19.5, 3.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASRGL1, ALP, CRASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS NTN ENZYME, HOMODIMER, ASPARAGINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NOMME,A.LAVIE REVDAT 4 20-SEP-23 4O0F 1 REMARK SEQADV LINK REVDAT 3 18-JUN-14 4O0F 1 JRNL REVDAT 2 11-JUN-14 4O0F 1 JRNL REVDAT 1 30-APR-14 4O0F 0 JRNL AUTH J.NOMME,Y.SU,A.LAVIE JRNL TITL ELUCIDATION OF THE SPECIFIC FUNCTION OF THE CONSERVED JRNL TITL 2 THREONINE TRIAD RESPONSIBLE FOR HUMAN L-ASPARAGINASE JRNL TITL 3 AUTOCLEAVAGE AND SUBSTRATE HYDROLYSIS. JRNL REF J.MOL.BIOL. V. 426 2471 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24768817 JRNL DOI 10.1016/J.JMB.2014.04.016 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 40863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.20000 REMARK 3 B22 (A**2) : -3.20000 REMARK 3 B33 (A**2) : 6.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4391 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4287 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5940 ; 1.741 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9898 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 7.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;39.013 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;19.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.048 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5034 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 894 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2379 ; 1.695 ; 2.608 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2366 ; 1.688 ; 2.606 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2962 ; 2.375 ; 3.901 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2955 ; 2.369 ; 3.901 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 1.553 ; 2.738 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2012 ; 1.548 ; 2.738 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2971 ; 2.243 ; 4.059 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5119 ; 3.815 ;21.002 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5102 ; 3.786 ;20.996 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.512 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 11.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2-2.5 M SODIUM MALONATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 199.49400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.74700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.62050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.87350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 249.36750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 153 REMARK 465 GLU A 154 REMARK 465 LYS A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 CYS A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 ASN A 165 REMARK 465 HIS B 153 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 GLY B 156 REMARK 465 ALA B 157 REMARK 465 GLN B 158 REMARK 465 LYS B 159 REMARK 465 THR B 160 REMARK 465 ASP B 161 REMARK 465 CYS B 162 REMARK 465 GLN B 163 REMARK 465 LYS B 164 REMARK 465 ASN B 165 REMARK 465 LEU B 166 REMARK 465 ASP B 300 REMARK 465 ASP B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 522 O HOH A 530 2.00 REMARK 500 O LEU A 166 O HOH A 571 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 575 O HOH B 521 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 175 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 CYS B 176 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -133.06 -134.11 REMARK 500 LYS A 17 -32.42 -38.96 REMARK 500 ASN A 62 67.48 -61.30 REMARK 500 ASP A 119 -116.72 42.69 REMARK 500 ALA A 205 -78.63 -104.37 REMARK 500 ILE A 213 -59.06 -131.21 REMARK 500 MET A 283 98.57 -170.45 REMARK 500 ILE A 297 -57.82 -127.25 REMARK 500 ASP A 300 58.78 31.08 REMARK 500 ALA B 12 -152.91 -122.52 REMARK 500 GLU B 21 -58.53 -28.88 REMARK 500 PRO B 59 -6.69 -55.18 REMARK 500 ASN B 62 71.24 -68.39 REMARK 500 ALA B 63 136.52 -172.31 REMARK 500 ASP B 119 -103.99 41.41 REMARK 500 ASN B 191 -5.67 92.04 REMARK 500 LYS B 192 139.77 -34.76 REMARK 500 MET B 193 154.18 -46.38 REMARK 500 ALA B 205 -69.05 -93.84 REMARK 500 ILE B 213 -66.71 -135.14 REMARK 500 GLU B 239 -30.83 -34.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 55 O REMARK 620 2 GLU A 56 O 74.7 REMARK 620 3 ASP A 58 O 71.2 95.8 REMARK 620 4 PHE A 61 O 103.8 155.5 106.9 REMARK 620 5 ALA A 63 O 98.9 80.0 170.0 76.1 REMARK 620 6 CYS A 65 O 159.4 92.6 94.7 94.5 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 166 O REMARK 620 2 HOH A 571 O 48.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 55 O REMARK 620 2 GLU B 56 O 77.0 REMARK 620 3 ASP B 58 O 77.7 108.1 REMARK 620 4 PHE B 61 O 108.0 164.6 87.3 REMARK 620 5 ALA B 63 O 108.2 82.1 169.4 82.5 REMARK 620 6 CYS B 65 O 157.5 85.4 94.9 92.6 82.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O0C RELATED DB: PDB REMARK 900 RELATED ID: 4O0D RELATED DB: PDB REMARK 900 RELATED ID: 4O0E RELATED DB: PDB REMARK 900 RELATED ID: 4O0G RELATED DB: PDB REMARK 900 RELATED ID: 4O0H RELATED DB: PDB DBREF 4O0F A 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 DBREF 4O0F B 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 SEQADV 4O0F HIS A 0 UNP Q7L266 EXPRESSION TAG SEQADV 4O0F ALA A 219 UNP Q7L266 THR 219 ENGINEERED MUTATION SEQADV 4O0F HIS B 0 UNP Q7L266 EXPRESSION TAG SEQADV 4O0F ALA B 219 UNP Q7L266 THR 219 ENGINEERED MUTATION SEQRES 1 A 309 HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA SEQRES 2 A 309 GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN SEQRES 3 A 309 GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU SEQRES 4 A 309 ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA SEQRES 5 A 309 VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY SEQRES 6 A 309 CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET SEQRES 7 A 309 ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY SEQRES 8 A 309 ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS SEQRES 9 A 309 LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE SEQRES 10 A 309 LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET SEQRES 11 A 309 GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU SEQRES 12 A 309 ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS SEQRES 13 A 309 GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY THR SEQRES 14 A 309 VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL ALA SEQRES 15 A 309 TYR ALA THR SER THR GLY GLY ILE VAL ASN LYS MET VAL SEQRES 16 A 309 GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY GLY SEQRES 17 A 309 TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR ALA GLY SEQRES 18 A 309 HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG LEU SEQRES 19 A 309 THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU GLU SEQRES 20 A 309 ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG VAL SEQRES 21 A 309 LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR GLY SEQRES 22 A 309 ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO TRP SEQRES 23 A 309 ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE ASP SEQRES 24 A 309 PRO ASP ASP THR THR ILE THR ASP LEU PRO SEQRES 1 B 309 HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA SEQRES 2 B 309 GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN SEQRES 3 B 309 GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU SEQRES 4 B 309 ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA SEQRES 5 B 309 VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY SEQRES 6 B 309 CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET SEQRES 7 B 309 ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY SEQRES 8 B 309 ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS SEQRES 9 B 309 LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE SEQRES 10 B 309 LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET SEQRES 11 B 309 GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU SEQRES 12 B 309 ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS SEQRES 13 B 309 GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY THR SEQRES 14 B 309 VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL ALA SEQRES 15 B 309 TYR ALA THR SER THR GLY GLY ILE VAL ASN LYS MET VAL SEQRES 16 B 309 GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY GLY SEQRES 17 B 309 TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR ALA GLY SEQRES 18 B 309 HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG LEU SEQRES 19 B 309 THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU GLU SEQRES 20 B 309 ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG VAL SEQRES 21 B 309 LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR GLY SEQRES 22 B 309 ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO TRP SEQRES 23 B 309 ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE ASP SEQRES 24 B 309 PRO ASP ASP THR THR ILE THR ASP LEU PRO HET NA A 401 1 HET NA A 402 1 HET GLY A 403 5 HET GLY A 404 5 HET NA B 401 1 HET NA B 402 1 HET GLY B 403 5 HET GLY B 404 5 HETNAM NA SODIUM ION HETNAM GLY GLYCINE FORMUL 3 NA 4(NA 1+) FORMUL 5 GLY 4(C2 H5 N O2) FORMUL 11 HOH *155(H2 O) HELIX 1 1 SER A 16 GLU A 40 1 25 HELIX 2 2 SER A 43 ASP A 58 1 16 HELIX 3 3 ASN A 100 THR A 112 1 13 HELIX 4 4 ASP A 119 MET A 129 1 11 HELIX 5 5 PRO A 135 LEU A 139 5 5 HELIX 6 6 THR A 141 LYS A 152 1 12 HELIX 7 7 HIS A 221 ASN A 229 1 9 HELIX 8 8 ASN A 229 GLY A 241 1 13 HELIX 9 9 THR A 243 LYS A 260 1 18 HELIX 10 10 ASP B 18 ARG B 39 1 22 HELIX 11 11 SER B 43 ASP B 58 1 16 HELIX 12 12 ASN B 100 THR B 112 1 13 HELIX 13 13 ASP B 119 MET B 129 1 11 HELIX 14 14 PRO B 135 LEU B 139 5 5 HELIX 15 15 THR B 141 LYS B 152 1 12 HELIX 16 16 HIS B 221 ASN B 229 1 9 HELIX 17 17 ASN B 229 GLN B 240 1 12 HELIX 18 18 THR B 243 LYS B 260 1 18 SHEET 1 A 9 PHE A 116 THR A 118 0 SHEET 2 A 9 SER A 88 VAL A 95 1 N ALA A 91 O LEU A 117 SHEET 3 A 9 MET A 77 ASP A 83 -1 N ASP A 83 O SER A 88 SHEET 4 A 9 VAL A 180 THR A 186 -1 O THR A 184 N SER A 80 SHEET 5 A 9 VAL A 169 LEU A 174 -1 N ALA A 171 O ALA A 183 SHEET 6 A 9 ILE A 4 HIS A 8 -1 N HIS A 8 O GLY A 170 SHEET 7 A 9 TRP A 285 LYS A 289 -1 O ALA A 286 N VAL A 7 SHEET 8 A 9 LYS A 292 GLY A 296 -1 O GLY A 296 N TRP A 285 SHEET 9 A 9 THR A 303 ASP A 306 -1 O THR A 305 N LEU A 293 SHEET 1 B 4 GLY A 207 ASP A 210 0 SHEET 2 B 4 GLY A 214 GLY A 220 -1 O VAL A 216 N TYR A 208 SHEET 3 B 4 GLY A 263 SER A 269 -1 O GLY A 264 N ALA A 219 SHEET 4 B 4 TRP A 274 TRP A 278 -1 O LYS A 277 N LEU A 265 SHEET 1 C 9 LEU B 117 THR B 118 0 SHEET 2 C 9 SER B 88 VAL B 95 1 N ALA B 91 O LEU B 117 SHEET 3 C 9 MET B 77 ASP B 83 -1 N ASP B 83 O SER B 88 SHEET 4 C 9 VAL B 180 THR B 186 -1 O THR B 184 N SER B 80 SHEET 5 C 9 VAL B 169 LEU B 174 -1 N ALA B 171 O ALA B 183 SHEET 6 C 9 ILE B 4 HIS B 8 -1 N VAL B 6 O VAL B 172 SHEET 7 C 9 TRP B 285 LYS B 289 -1 O ALA B 286 N VAL B 7 SHEET 8 C 9 LYS B 292 GLY B 296 -1 O HIS B 294 N ALA B 287 SHEET 9 C 9 THR B 303 ASP B 306 -1 O THR B 305 N LEU B 293 SHEET 1 D 4 GLY B 207 ASP B 210 0 SHEET 2 D 4 GLY B 214 GLY B 220 -1 O GLY B 214 N ASP B 210 SHEET 3 D 4 GLY B 263 SER B 269 -1 O ILE B 266 N SER B 217 SHEET 4 D 4 TRP B 274 TRP B 278 -1 O LYS B 277 N LEU B 265 LINK O LEU A 55 NA NA A 401 1555 1555 2.92 LINK O GLU A 56 NA NA A 401 1555 1555 2.80 LINK O ASP A 58 NA NA A 401 1555 1555 2.30 LINK O PHE A 61 NA NA A 401 1555 1555 2.46 LINK O ALA A 63 NA NA A 401 1555 1555 2.46 LINK O CYS A 65 NA NA A 401 1555 1555 2.06 LINK O LEU A 166 NA NA A 402 1555 1555 2.04 LINK NA NA A 402 O HOH A 571 1555 1555 2.88 LINK O LEU B 55 NA NA B 401 1555 1555 2.61 LINK O GLU B 56 NA NA B 401 1555 1555 2.49 LINK O ASP B 58 NA NA B 401 1555 1555 2.51 LINK O PHE B 61 NA NA B 401 1555 1555 2.81 LINK O ALA B 63 NA NA B 401 1555 1555 2.26 LINK O CYS B 65 NA NA B 401 1555 1555 2.08 SITE 1 AC1 6 LEU A 55 GLU A 56 ASP A 58 PHE A 61 SITE 2 AC1 6 ALA A 63 CYS A 65 SITE 1 AC2 6 GLY A 11 LEU A 166 GLY A 167 THR A 168 SITE 2 AC2 6 GLY A 220 HOH A 571 SITE 1 AC3 9 THR A 168 GLY A 188 ARG A 196 ASP A 199 SITE 2 AC3 9 SER A 200 GLY A 220 GLY A 222 HOH A 559 SITE 3 AC3 9 HOH A 571 SITE 1 AC4 7 SER A 88 ALA A 89 MET A 109 THR A 112 SITE 2 AC4 7 HIS A 114 CYS A 115 LYS B 227 SITE 1 AC5 6 LEU B 55 GLU B 56 ASP B 58 PHE B 61 SITE 2 AC5 6 ALA B 63 CYS B 65 SITE 1 AC6 5 GLY B 10 GLY B 11 GLY B 167 THR B 168 SITE 2 AC6 5 GLY B 220 SITE 1 AC7 8 LYS A 227 SER B 88 ALA B 89 VAL B 108 SITE 2 AC7 8 MET B 109 THR B 112 HIS B 114 CYS B 115 SITE 1 AC8 6 THR B 168 ILE B 189 ARG B 196 ASP B 199 SITE 2 AC8 6 GLY B 220 GLY B 222 CRYST1 59.471 59.471 299.241 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016815 0.009708 0.000000 0.00000 SCALE2 0.000000 0.019416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003342 0.00000