HEADER OXIDOREDUCTASE 13-DEC-13 4O0L TITLE CRYSTAL STRUCTURE OF NADPH-DEPENDENT 3-QUINUCLIDINONE REDUCTASE FROM TITLE 2 RHODOTORULA RUBRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH-DEPENDENT 3-QUINUCLIDINONE REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTORULA MUCILAGINOSA; SOURCE 3 ORGANISM_TAXID: 5537; SOURCE 4 GENE: RQR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TAKESHITA,M.TANOKURA REVDAT 2 08-NOV-23 4O0L 1 REMARK SEQADV REVDAT 1 13-AUG-14 4O0L 0 JRNL AUTH D.TAKESHITA,M.KATAOKA,T.MIYAKAWA,K.MIYAZONO,S.KUMASHIRO, JRNL AUTH 2 T.NAGAI,N.URANO,A.UZURA,K.NAGATA,S.SHIMIZU,M.TANOKURA JRNL TITL STRUCTURAL BASIS OF STEREOSPECIFIC REDUCTION BY JRNL TITL 2 QUINUCLIDINONE REDUCTASE JRNL REF AMB EXPRESS V. 4 6 2014 JRNL REFN ESSN 2191-0855 JRNL PMID 24507746 JRNL DOI 10.1186/2191-0855-4-6 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 53024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.54000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -5.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8408 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7748 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11436 ; 1.517 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17848 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1060 ; 5.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;36.614 ;23.678 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1276 ;14.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.255 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1240 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9600 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1952 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4O0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CHES, 30% PEG8000, 3% SUCROSE, REMARK 280 PH 10.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.67500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.63600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.63600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.33750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.63600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.63600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 199.01250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.63600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.63600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.33750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.63600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.63600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 199.01250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 132.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 PRO C 4 REMARK 465 SER C 5 REMARK 465 ASP C 6 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 SER D 3 REMARK 465 PRO D 4 REMARK 465 SER D 5 REMARK 465 ASP D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 7 N GLY A 7 CA 0.114 REMARK 500 GLY A 7 C GLY A 7 O 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 165 -130.82 -97.19 REMARK 500 GLN A 178 58.66 -146.25 REMARK 500 ARG A 200 -70.26 -26.55 REMARK 500 ASN A 201 1.46 -63.43 REMARK 500 PHE A 202 -7.27 -150.10 REMARK 500 PRO B 8 35.57 -96.91 REMARK 500 ALA B 51 5.37 -68.93 REMARK 500 THR B 165 -132.75 -99.89 REMARK 500 GLN B 178 50.63 -157.12 REMARK 500 PHE B 202 -0.99 -147.77 REMARK 500 THR C 165 -133.22 -100.87 REMARK 500 GLN C 178 56.24 -147.44 REMARK 500 PHE C 202 -2.39 -146.93 REMARK 500 THR D 165 -133.14 -95.20 REMARK 500 GLN D 178 55.73 -154.49 REMARK 500 PHE D 202 -2.60 -142.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP D 300 DBREF 4O0L A 1 272 UNP B9ZZZ6 B9ZZZ6_RHOMI 1 272 DBREF 4O0L B 1 272 UNP B9ZZZ6 B9ZZZ6_RHOMI 1 272 DBREF 4O0L C 1 272 UNP B9ZZZ6 B9ZZZ6_RHOMI 1 272 DBREF 4O0L D 1 272 UNP B9ZZZ6 B9ZZZ6_RHOMI 1 272 SEQADV 4O0L GLY A -2 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L SER A -1 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L HIS A 0 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L GLY B -2 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L SER B -1 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L HIS B 0 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L GLY C -2 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L SER C -1 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L HIS C 0 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L GLY D -2 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L SER D -1 UNP B9ZZZ6 EXPRESSION TAG SEQADV 4O0L HIS D 0 UNP B9ZZZ6 EXPRESSION TAG SEQRES 1 A 275 GLY SER HIS MET SER SER PRO SER ASP GLY PRO PHE PRO SEQRES 2 A 275 LYS ALA THR PRO GLN LEU PRO ASN SER VAL PHE ASP MET SEQRES 3 A 275 PHE SER MET LYS GLY LYS VAL THR ALA ILE THR GLY GLY SEQRES 4 A 275 GLY GLY GLY ILE GLY PHE ALA ALA ALA GLU ALA ILE ALA SEQRES 5 A 275 GLU ALA GLY GLY ASP VAL ALA LEU LEU TYR ARG SER ALA SEQRES 6 A 275 PRO ASN MET GLU GLU ARG SER ALA GLU LEU ALA LYS ARG SEQRES 7 A 275 PHE GLY VAL LYS VAL LYS SER TYR GLN CYS GLU VAL THR SEQRES 8 A 275 GLU HIS GLU SER VAL LYS GLN ALA ILE GLU ALA VAL GLU SEQRES 9 A 275 LYS ASP PHE GLY ARG LEU ASP CYS TYR ILE ALA ASN ALA SEQRES 10 A 275 GLY GLY GLY VAL PRO GLY SER ILE ASN PRO ASP TYR PRO SEQRES 11 A 275 LEU GLU ALA TRP HIS LYS THR GLN SER VAL ASN LEU HIS SEQRES 12 A 275 SER THR PHE TYR ALA ALA ARG GLU CYS ALA ARG ILE PHE SEQRES 13 A 275 LYS ALA GLN GLY SER GLY SER PHE ILE ALA THR THR SER SEQRES 14 A 275 ILE SER ALA ARG ILE VAL ASN VAL PRO TYR ASP GLN PRO SEQRES 15 A 275 ALA TYR ASN SER SER LYS ALA ALA VAL VAL HIS PHE CYS SEQRES 16 A 275 ARG SER LEU ALA ARG ASP TRP ARG ASN PHE ALA ARG VAL SEQRES 17 A 275 ASN THR ILE SER PRO GLY PHE PHE ASP THR PRO MET GLY SEQRES 18 A 275 PRO SER ASP LYS ALA VAL GLU ASP VAL LEU TYR GLN LYS SEQRES 19 A 275 SER VAL LEU GLY ARG ALA GLY ASP VAL LYS GLU LEU LYS SEQRES 20 A 275 ALA ALA TYR LEU TYR LEU ALA SER ASN ALA SER THR TYR SEQRES 21 A 275 THR THR GLY ALA ASP LEU LEU ILE ASP GLY GLY TYR CYS SEQRES 22 A 275 LEU THR SEQRES 1 B 275 GLY SER HIS MET SER SER PRO SER ASP GLY PRO PHE PRO SEQRES 2 B 275 LYS ALA THR PRO GLN LEU PRO ASN SER VAL PHE ASP MET SEQRES 3 B 275 PHE SER MET LYS GLY LYS VAL THR ALA ILE THR GLY GLY SEQRES 4 B 275 GLY GLY GLY ILE GLY PHE ALA ALA ALA GLU ALA ILE ALA SEQRES 5 B 275 GLU ALA GLY GLY ASP VAL ALA LEU LEU TYR ARG SER ALA SEQRES 6 B 275 PRO ASN MET GLU GLU ARG SER ALA GLU LEU ALA LYS ARG SEQRES 7 B 275 PHE GLY VAL LYS VAL LYS SER TYR GLN CYS GLU VAL THR SEQRES 8 B 275 GLU HIS GLU SER VAL LYS GLN ALA ILE GLU ALA VAL GLU SEQRES 9 B 275 LYS ASP PHE GLY ARG LEU ASP CYS TYR ILE ALA ASN ALA SEQRES 10 B 275 GLY GLY GLY VAL PRO GLY SER ILE ASN PRO ASP TYR PRO SEQRES 11 B 275 LEU GLU ALA TRP HIS LYS THR GLN SER VAL ASN LEU HIS SEQRES 12 B 275 SER THR PHE TYR ALA ALA ARG GLU CYS ALA ARG ILE PHE SEQRES 13 B 275 LYS ALA GLN GLY SER GLY SER PHE ILE ALA THR THR SER SEQRES 14 B 275 ILE SER ALA ARG ILE VAL ASN VAL PRO TYR ASP GLN PRO SEQRES 15 B 275 ALA TYR ASN SER SER LYS ALA ALA VAL VAL HIS PHE CYS SEQRES 16 B 275 ARG SER LEU ALA ARG ASP TRP ARG ASN PHE ALA ARG VAL SEQRES 17 B 275 ASN THR ILE SER PRO GLY PHE PHE ASP THR PRO MET GLY SEQRES 18 B 275 PRO SER ASP LYS ALA VAL GLU ASP VAL LEU TYR GLN LYS SEQRES 19 B 275 SER VAL LEU GLY ARG ALA GLY ASP VAL LYS GLU LEU LYS SEQRES 20 B 275 ALA ALA TYR LEU TYR LEU ALA SER ASN ALA SER THR TYR SEQRES 21 B 275 THR THR GLY ALA ASP LEU LEU ILE ASP GLY GLY TYR CYS SEQRES 22 B 275 LEU THR SEQRES 1 C 275 GLY SER HIS MET SER SER PRO SER ASP GLY PRO PHE PRO SEQRES 2 C 275 LYS ALA THR PRO GLN LEU PRO ASN SER VAL PHE ASP MET SEQRES 3 C 275 PHE SER MET LYS GLY LYS VAL THR ALA ILE THR GLY GLY SEQRES 4 C 275 GLY GLY GLY ILE GLY PHE ALA ALA ALA GLU ALA ILE ALA SEQRES 5 C 275 GLU ALA GLY GLY ASP VAL ALA LEU LEU TYR ARG SER ALA SEQRES 6 C 275 PRO ASN MET GLU GLU ARG SER ALA GLU LEU ALA LYS ARG SEQRES 7 C 275 PHE GLY VAL LYS VAL LYS SER TYR GLN CYS GLU VAL THR SEQRES 8 C 275 GLU HIS GLU SER VAL LYS GLN ALA ILE GLU ALA VAL GLU SEQRES 9 C 275 LYS ASP PHE GLY ARG LEU ASP CYS TYR ILE ALA ASN ALA SEQRES 10 C 275 GLY GLY GLY VAL PRO GLY SER ILE ASN PRO ASP TYR PRO SEQRES 11 C 275 LEU GLU ALA TRP HIS LYS THR GLN SER VAL ASN LEU HIS SEQRES 12 C 275 SER THR PHE TYR ALA ALA ARG GLU CYS ALA ARG ILE PHE SEQRES 13 C 275 LYS ALA GLN GLY SER GLY SER PHE ILE ALA THR THR SER SEQRES 14 C 275 ILE SER ALA ARG ILE VAL ASN VAL PRO TYR ASP GLN PRO SEQRES 15 C 275 ALA TYR ASN SER SER LYS ALA ALA VAL VAL HIS PHE CYS SEQRES 16 C 275 ARG SER LEU ALA ARG ASP TRP ARG ASN PHE ALA ARG VAL SEQRES 17 C 275 ASN THR ILE SER PRO GLY PHE PHE ASP THR PRO MET GLY SEQRES 18 C 275 PRO SER ASP LYS ALA VAL GLU ASP VAL LEU TYR GLN LYS SEQRES 19 C 275 SER VAL LEU GLY ARG ALA GLY ASP VAL LYS GLU LEU LYS SEQRES 20 C 275 ALA ALA TYR LEU TYR LEU ALA SER ASN ALA SER THR TYR SEQRES 21 C 275 THR THR GLY ALA ASP LEU LEU ILE ASP GLY GLY TYR CYS SEQRES 22 C 275 LEU THR SEQRES 1 D 275 GLY SER HIS MET SER SER PRO SER ASP GLY PRO PHE PRO SEQRES 2 D 275 LYS ALA THR PRO GLN LEU PRO ASN SER VAL PHE ASP MET SEQRES 3 D 275 PHE SER MET LYS GLY LYS VAL THR ALA ILE THR GLY GLY SEQRES 4 D 275 GLY GLY GLY ILE GLY PHE ALA ALA ALA GLU ALA ILE ALA SEQRES 5 D 275 GLU ALA GLY GLY ASP VAL ALA LEU LEU TYR ARG SER ALA SEQRES 6 D 275 PRO ASN MET GLU GLU ARG SER ALA GLU LEU ALA LYS ARG SEQRES 7 D 275 PHE GLY VAL LYS VAL LYS SER TYR GLN CYS GLU VAL THR SEQRES 8 D 275 GLU HIS GLU SER VAL LYS GLN ALA ILE GLU ALA VAL GLU SEQRES 9 D 275 LYS ASP PHE GLY ARG LEU ASP CYS TYR ILE ALA ASN ALA SEQRES 10 D 275 GLY GLY GLY VAL PRO GLY SER ILE ASN PRO ASP TYR PRO SEQRES 11 D 275 LEU GLU ALA TRP HIS LYS THR GLN SER VAL ASN LEU HIS SEQRES 12 D 275 SER THR PHE TYR ALA ALA ARG GLU CYS ALA ARG ILE PHE SEQRES 13 D 275 LYS ALA GLN GLY SER GLY SER PHE ILE ALA THR THR SER SEQRES 14 D 275 ILE SER ALA ARG ILE VAL ASN VAL PRO TYR ASP GLN PRO SEQRES 15 D 275 ALA TYR ASN SER SER LYS ALA ALA VAL VAL HIS PHE CYS SEQRES 16 D 275 ARG SER LEU ALA ARG ASP TRP ARG ASN PHE ALA ARG VAL SEQRES 17 D 275 ASN THR ILE SER PRO GLY PHE PHE ASP THR PRO MET GLY SEQRES 18 D 275 PRO SER ASP LYS ALA VAL GLU ASP VAL LEU TYR GLN LYS SEQRES 19 D 275 SER VAL LEU GLY ARG ALA GLY ASP VAL LYS GLU LEU LYS SEQRES 20 D 275 ALA ALA TYR LEU TYR LEU ALA SER ASN ALA SER THR TYR SEQRES 21 D 275 THR THR GLY ALA ASP LEU LEU ILE ASP GLY GLY TYR CYS SEQRES 22 D 275 LEU THR HET NDP A 300 48 HET NDP B 300 48 HET NDP C 300 48 HET NDP D 300 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 5 NDP 4(C21 H30 N7 O17 P3) FORMUL 9 HOH *302(H2 O) HELIX 1 1 SER A 19 PHE A 24 1 6 HELIX 2 2 GLY A 38 ALA A 51 1 14 HELIX 3 3 ASN A 64 GLY A 77 1 14 HELIX 4 4 GLU A 89 GLY A 105 1 17 HELIX 5 5 PRO A 127 LEU A 139 1 13 HELIX 6 6 LEU A 139 GLY A 157 1 19 HELIX 7 7 SER A 166 ARG A 170 5 5 HELIX 8 8 GLN A 178 TRP A 199 1 22 HELIX 9 9 ASP A 221 SER A 232 1 12 HELIX 10 10 VAL A 240 SER A 252 1 13 HELIX 11 11 ASN A 253 THR A 256 5 4 HELIX 12 12 SER B 19 PHE B 24 1 6 HELIX 13 13 GLY B 38 ALA B 51 1 14 HELIX 14 14 ASN B 64 GLY B 77 1 14 HELIX 15 15 GLU B 89 GLY B 105 1 17 HELIX 16 16 PRO B 127 GLY B 157 1 31 HELIX 17 17 SER B 166 ARG B 170 5 5 HELIX 18 18 GLN B 178 TRP B 199 1 22 HELIX 19 19 ASP B 221 SER B 232 1 12 HELIX 20 20 VAL B 240 SER B 252 1 13 HELIX 21 21 ASN B 253 THR B 256 5 4 HELIX 22 22 SER C 19 PHE C 24 1 6 HELIX 23 23 GLY C 38 ALA C 51 1 14 HELIX 24 24 ASN C 64 GLY C 77 1 14 HELIX 25 25 GLU C 89 GLY C 105 1 17 HELIX 26 26 PRO C 127 LEU C 139 1 13 HELIX 27 27 LEU C 139 GLY C 157 1 19 HELIX 28 28 SER C 166 ARG C 170 5 5 HELIX 29 29 GLN C 178 TRP C 199 1 22 HELIX 30 30 ASP C 221 SER C 232 1 12 HELIX 31 31 VAL C 240 SER C 252 1 13 HELIX 32 32 ASN C 253 THR C 256 5 4 HELIX 33 33 SER D 19 PHE D 24 1 6 HELIX 34 34 GLY D 38 ALA D 51 1 14 HELIX 35 35 ASN D 64 GLY D 77 1 14 HELIX 36 36 GLU D 89 GLY D 105 1 17 HELIX 37 37 PRO D 127 LEU D 139 1 13 HELIX 38 38 LEU D 139 GLY D 157 1 19 HELIX 39 39 SER D 166 ARG D 170 5 5 HELIX 40 40 GLN D 178 TRP D 199 1 22 HELIX 41 41 ASP D 221 SER D 232 1 12 HELIX 42 42 VAL D 240 SER D 252 1 13 HELIX 43 43 ASN D 253 THR D 256 5 4 SHEET 1 A 7 VAL A 80 GLN A 84 0 SHEET 2 A 7 ASP A 54 TYR A 59 1 N LEU A 57 O TYR A 83 SHEET 3 A 7 VAL A 30 ILE A 33 1 N THR A 31 O ALA A 56 SHEET 4 A 7 CYS A 109 ALA A 112 1 O ILE A 111 N ALA A 32 SHEET 5 A 7 SER A 160 THR A 164 1 O ILE A 162 N ALA A 112 SHEET 6 A 7 ARG A 204 PRO A 210 1 O ARG A 204 N PHE A 161 SHEET 7 A 7 ASP A 262 ILE A 265 1 O LEU A 263 N SER A 209 SHEET 1 B 7 VAL B 80 GLN B 84 0 SHEET 2 B 7 ASP B 54 TYR B 59 1 N LEU B 57 O TYR B 83 SHEET 3 B 7 VAL B 30 ILE B 33 1 N THR B 31 O ALA B 56 SHEET 4 B 7 CYS B 109 ALA B 112 1 O ILE B 111 N ALA B 32 SHEET 5 B 7 SER B 160 THR B 164 1 O ILE B 162 N TYR B 110 SHEET 6 B 7 ARG B 204 PRO B 210 1 O ARG B 204 N PHE B 161 SHEET 7 B 7 ASP B 262 ILE B 265 1 O LEU B 263 N THR B 207 SHEET 1 C 7 VAL C 80 GLN C 84 0 SHEET 2 C 7 ASP C 54 TYR C 59 1 N LEU C 57 O TYR C 83 SHEET 3 C 7 VAL C 30 ILE C 33 1 N THR C 31 O ALA C 56 SHEET 4 C 7 CYS C 109 ALA C 112 1 O CYS C 109 N ALA C 32 SHEET 5 C 7 SER C 160 THR C 164 1 O ILE C 162 N ALA C 112 SHEET 6 C 7 ARG C 204 PRO C 210 1 O ILE C 208 N ALA C 163 SHEET 7 C 7 ASP C 262 ILE C 265 1 O LEU C 263 N SER C 209 SHEET 1 D 7 VAL D 80 GLN D 84 0 SHEET 2 D 7 ASP D 54 TYR D 59 1 N LEU D 57 O LYS D 81 SHEET 3 D 7 VAL D 30 ILE D 33 1 N THR D 31 O ALA D 56 SHEET 4 D 7 CYS D 109 ALA D 112 1 O ILE D 111 N ALA D 32 SHEET 5 D 7 SER D 160 THR D 164 1 O ILE D 162 N ALA D 112 SHEET 6 D 7 ARG D 204 PRO D 210 1 O ARG D 204 N PHE D 161 SHEET 7 D 7 ASP D 262 ILE D 265 1 O LEU D 263 N SER D 209 CISPEP 1 GLY A 7 PRO A 8 0 7.43 CISPEP 2 PHE A 9 PRO A 10 0 2.79 CISPEP 3 VAL A 174 PRO A 175 0 2.18 CISPEP 4 PHE B 9 PRO B 10 0 4.14 CISPEP 5 VAL B 174 PRO B 175 0 2.89 CISPEP 6 PHE C 9 PRO C 10 0 -0.61 CISPEP 7 VAL C 174 PRO C 175 0 1.45 CISPEP 8 PHE D 9 PRO D 10 0 -1.51 CISPEP 9 VAL D 174 PRO D 175 0 3.31 SITE 1 AC1 32 GLY A 35 GLY A 38 GLY A 39 ILE A 40 SITE 2 AC1 32 ARG A 60 SER A 61 ALA A 62 CYS A 85 SITE 3 AC1 32 GLU A 86 VAL A 87 ASN A 113 ALA A 114 SITE 4 AC1 32 GLY A 115 VAL A 137 THR A 164 THR A 165 SITE 5 AC1 32 SER A 166 TYR A 181 LYS A 185 PRO A 210 SITE 6 AC1 32 GLY A 211 PHE A 212 PHE A 213 THR A 215 SITE 7 AC1 32 PRO A 216 MET A 217 GLY A 218 HOH A 413 SITE 8 AC1 32 HOH A 433 HOH A 441 HOH A 446 HOH A 466 SITE 1 AC2 33 GLY B 35 GLY B 38 GLY B 39 ILE B 40 SITE 2 AC2 33 ARG B 60 SER B 61 ALA B 62 CYS B 85 SITE 3 AC2 33 GLU B 86 VAL B 87 ASN B 113 ALA B 114 SITE 4 AC2 33 GLY B 115 VAL B 137 THR B 164 THR B 165 SITE 5 AC2 33 SER B 166 TYR B 181 LYS B 185 PRO B 210 SITE 6 AC2 33 GLY B 211 PHE B 212 PHE B 213 THR B 215 SITE 7 AC2 33 PRO B 216 MET B 217 GLY B 218 HOH B 405 SITE 8 AC2 33 HOH B 408 HOH B 424 HOH B 435 HOH B 438 SITE 9 AC2 33 HOH B 465 SITE 1 AC3 32 GLY C 35 GLY C 38 GLY C 39 ILE C 40 SITE 2 AC3 32 ARG C 60 SER C 61 ALA C 62 CYS C 85 SITE 3 AC3 32 GLU C 86 VAL C 87 ASN C 113 ALA C 114 SITE 4 AC3 32 GLY C 115 VAL C 137 THR C 164 THR C 165 SITE 5 AC3 32 SER C 166 TYR C 181 LYS C 185 PRO C 210 SITE 6 AC3 32 GLY C 211 PHE C 212 PHE C 213 THR C 215 SITE 7 AC3 32 PRO C 216 MET C 217 GLY C 218 HOH C 401 SITE 8 AC3 32 HOH C 402 HOH C 462 HOH C 463 HOH C 464 SITE 1 AC4 31 GLY D 35 GLY D 38 GLY D 39 ILE D 40 SITE 2 AC4 31 ARG D 60 SER D 61 ALA D 62 CYS D 85 SITE 3 AC4 31 GLU D 86 VAL D 87 ASN D 113 ALA D 114 SITE 4 AC4 31 GLY D 115 VAL D 137 THR D 164 THR D 165 SITE 5 AC4 31 SER D 166 TYR D 181 LYS D 185 PRO D 210 SITE 6 AC4 31 GLY D 211 PHE D 212 PHE D 213 THR D 215 SITE 7 AC4 31 PRO D 216 MET D 217 GLY D 218 HOH D 410 SITE 8 AC4 31 HOH D 426 HOH D 435 HOH D 463 CRYST1 91.272 91.272 265.350 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003769 0.00000