HEADER TRANSFERASE 15-DEC-13 4O1G TITLE MTB ADENOSINE KINASE IN COMPLEX WITH GAMMA-THIO-ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: ADOK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DOSTAL,J.BRYNDA,M.HOCEK,I.PICHOVA REVDAT 2 20-MAR-24 4O1G 1 REMARK LINK REVDAT 1 26-NOV-14 4O1G 0 JRNL AUTH J.SNASEL,P.NAUS,J.DOSTAL,A.HNIZDA,J.FANFRLIK,J.BRYNDA, JRNL AUTH 2 A.BOURDERIOUX,M.DUSEK,H.DVORAKOVA,J.STOLARIKOVA,H.ZABRANSKA, JRNL AUTH 3 R.POHL,P.KONECNY,P.DZUBAK,I.VOTRUBA,M.HAJDUCH,P.REZACOVA, JRNL AUTH 4 V.VEVERKA,M.HOCEK,I.PICHOVA JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF MYCOBACTERIAL AND HUMAN JRNL TITL 2 ADENOSINE KINASE BY 7-SUBSTITUTED 7-(HET)ARYL-7-DEAZAADENINE JRNL TITL 3 RIBONUCLEOSIDES JRNL REF J.MED.CHEM. V. 57 8268 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25259627 JRNL DOI 10.1021/JM500497V REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.677 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2495 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1593 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3407 ; 1.486 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3891 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;29.098 ;24.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;12.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2835 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1910 0.6560 -30.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1133 REMARK 3 T33: 0.0193 T12: -0.0533 REMARK 3 T13: -0.0080 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4474 L22: 0.0638 REMARK 3 L33: 0.8323 L12: -0.1045 REMARK 3 L13: 0.0502 L23: -0.1753 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.1847 S13: -0.0601 REMARK 3 S21: -0.0628 S22: -0.0050 S23: 0.0135 REMARK 3 S31: 0.2184 S32: -0.1126 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2750 5.1060 -9.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0151 REMARK 3 T33: 0.0664 T12: -0.0180 REMARK 3 T13: 0.0032 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.9158 L22: 0.1613 REMARK 3 L33: 0.9656 L12: 0.0638 REMARK 3 L13: -0.8076 L23: -0.1977 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -0.0359 S13: 0.1889 REMARK 3 S21: -0.0269 S22: 0.0164 S23: 0.0093 REMARK 3 S31: 0.0561 S32: -0.0182 S33: -0.0831 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5050 -5.2460 -16.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0256 REMARK 3 T33: 0.0913 T12: 0.0133 REMARK 3 T13: 0.0457 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.3880 L22: 0.1641 REMARK 3 L33: 1.0436 L12: 0.0453 REMARK 3 L13: 0.0844 L23: -0.1381 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.1856 S13: -0.3556 REMARK 3 S21: -0.0534 S22: 0.0059 S23: -0.0545 REMARK 3 S31: 0.1744 S32: 0.0649 S33: 0.0991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4O1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 40.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.42150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.42150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -41.32327 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -81.31372 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 HIS A 29 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 180 O HOH A 511 2455 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 77.94 -155.53 REMARK 500 ASP A 73 1.76 -67.80 REMARK 500 SER A 171 -114.40 36.32 REMARK 500 ASP A 251 108.49 -161.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 O REMARK 620 2 THR A 253 O 86.2 REMARK 620 3 VAL A 287 O 87.4 107.0 REMARK 620 4 SER A 290 O 97.2 174.0 78.2 REMARK 620 5 GLY A 292 O 146.9 84.9 125.7 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 402 DBREF 4O1G A 1 324 UNP P83734 ADOK_MYCTU 1 324 SEQRES 1 A 324 MET THR ILE ALA VAL THR GLY SER ILE ALA THR ASP HIS SEQRES 2 A 324 LEU MET ARG PHE PRO GLY ARG PHE SER GLU GLN LEU LEU SEQRES 3 A 324 PRO GLU HIS LEU HIS LYS VAL SER LEU SER PHE LEU VAL SEQRES 4 A 324 ASP ASP LEU VAL MET HIS ARG GLY GLY VAL ALA GLY ASN SEQRES 5 A 324 MET ALA PHE ALA ILE GLY VAL LEU GLY GLY GLU VAL ALA SEQRES 6 A 324 LEU VAL GLY ALA ALA GLY ALA ASP PHE ALA ASP TYR ARG SEQRES 7 A 324 ASP TRP LEU LYS ALA ARG GLY VAL ASN CYS ASP HIS VAL SEQRES 8 A 324 LEU ILE SER GLU THR ALA HIS THR ALA ARG PHE THR CYS SEQRES 9 A 324 THR THR ASP VAL ASP MET ALA GLN ILE ALA SER PHE TYR SEQRES 10 A 324 PRO GLY ALA MET SER GLU ALA ARG ASN ILE LYS LEU ALA SEQRES 11 A 324 ASP VAL VAL SER ALA ILE GLY LYS PRO GLU LEU VAL ILE SEQRES 12 A 324 ILE GLY ALA ASN ASP PRO GLU ALA MET PHE LEU HIS THR SEQRES 13 A 324 GLU GLU CYS ARG LYS LEU GLY LEU ALA PHE ALA ALA ASP SEQRES 14 A 324 PRO SER GLN GLN LEU ALA ARG LEU SER GLY GLU GLU ILE SEQRES 15 A 324 ARG ARG LEU VAL ASN GLY ALA ALA TYR LEU PHE THR ASN SEQRES 16 A 324 ASP TYR GLU TRP ASP LEU LEU LEU SER LYS THR GLY TRP SEQRES 17 A 324 SER GLU ALA ASP VAL MET ALA GLN ILE ASP LEU ARG VAL SEQRES 18 A 324 THR THR LEU GLY PRO LYS GLY VAL ASP LEU VAL GLU PRO SEQRES 19 A 324 ASP GLY THR THR ILE HIS VAL GLY VAL VAL PRO GLU THR SEQRES 20 A 324 SER GLN THR ASP PRO THR GLY VAL GLY ASP ALA PHE ARG SEQRES 21 A 324 ALA GLY PHE LEU THR GLY ARG SER ALA GLY LEU GLY LEU SEQRES 22 A 324 GLU ARG SER ALA GLN LEU GLY SER LEU VAL ALA VAL LEU SEQRES 23 A 324 VAL LEU GLU SER THR GLY THR GLN GLU TRP GLN TRP ASP SEQRES 24 A 324 TYR GLU ALA ALA ALA SER ARG LEU ALA GLY ALA TYR GLY SEQRES 25 A 324 GLU HIS ALA ALA ALA GLU ILE VAL ALA VAL LEU ALA HET NA A 401 1 HET AGS A 402 31 HETNAM NA SODIUM ION HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 NA NA 1+ FORMUL 3 AGS C10 H16 N5 O12 P3 S FORMUL 4 HOH *140(H2 O) HELIX 1 1 ARG A 20 LEU A 25 5 6 HELIX 2 2 LEU A 26 VAL A 33 5 8 HELIX 3 3 GLY A 48 LEU A 60 1 13 HELIX 4 4 GLY A 71 ASP A 73 5 3 HELIX 5 5 PHE A 74 ARG A 84 1 11 HELIX 6 6 PRO A 118 ILE A 127 5 10 HELIX 7 7 LYS A 128 GLY A 137 1 10 HELIX 8 8 ASP A 148 GLY A 163 1 16 HELIX 9 9 PRO A 170 LEU A 174 5 5 HELIX 10 10 SER A 178 ASN A 187 1 10 HELIX 11 11 ASP A 196 GLY A 207 1 12 HELIX 12 12 SER A 209 ALA A 215 1 7 HELIX 13 13 GLY A 225 LYS A 227 5 3 HELIX 14 14 GLY A 254 ALA A 269 1 16 HELIX 15 15 GLY A 272 GLU A 289 1 18 HELIX 16 16 ASP A 299 GLY A 312 1 14 HELIX 17 17 GLY A 312 ALA A 321 1 10 SHEET 1 A 9 VAL A 86 ASN A 87 0 SHEET 2 A 9 VAL A 64 VAL A 67 1 N VAL A 64 O ASN A 87 SHEET 3 A 9 ILE A 3 THR A 6 1 N VAL A 5 O ALA A 65 SHEET 4 A 9 LEU A 141 GLY A 145 1 O ILE A 143 N ALA A 4 SHEET 5 A 9 PHE A 166 ASP A 169 1 O ALA A 167 N ILE A 144 SHEET 6 A 9 TYR A 191 ASN A 195 1 O TYR A 191 N ALA A 168 SHEET 7 A 9 ARG A 220 THR A 223 1 O VAL A 221 N LEU A 192 SHEET 8 A 9 VAL A 229 VAL A 232 -1 O ASP A 230 N THR A 222 SHEET 9 A 9 THR A 238 VAL A 241 -1 O ILE A 239 N LEU A 231 SHEET 1 B 4 LEU A 42 GLY A 47 0 SHEET 2 B 4 ALA A 10 ARG A 16 -1 N LEU A 14 O VAL A 43 SHEET 3 B 4 ALA A 100 THR A 106 1 O PHE A 102 N HIS A 13 SHEET 4 B 4 GLN A 112 TYR A 117 -1 O TYR A 117 N ARG A 101 SHEET 1 C 2 ALA A 69 ALA A 70 0 SHEET 2 C 2 LEU A 92 ILE A 93 1 O LEU A 92 N ALA A 70 LINK O ASP A 251 NA NA A 401 1555 1555 2.33 LINK O THR A 253 NA NA A 401 1555 1555 2.88 LINK O VAL A 287 NA NA A 401 1555 1555 2.32 LINK O SER A 290 NA NA A 401 1555 1555 2.47 LINK O GLY A 292 NA NA A 401 1555 1555 2.34 SITE 1 AC1 5 ASP A 251 THR A 253 VAL A 287 SER A 290 SITE 2 AC1 5 GLY A 292 SITE 1 AC2 26 ASN A 195 THR A 223 LEU A 224 GLY A 225 SITE 2 AC2 26 PRO A 226 GLY A 228 VAL A 243 VAL A 244 SITE 3 AC2 26 GLU A 246 GLN A 249 PRO A 252 VAL A 255 SITE 4 AC2 26 GLY A 256 SER A 281 ALA A 284 LEU A 288 SITE 5 AC2 26 HOH A 512 HOH A 516 HOH A 520 HOH A 567 SITE 6 AC2 26 HOH A 587 HOH A 599 HOH A 601 HOH A 602 SITE 7 AC2 26 HOH A 632 HOH A 634 CRYST1 54.843 72.410 82.430 90.00 99.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018234 0.000000 0.003030 0.00000 SCALE2 0.000000 0.013810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012298 0.00000