HEADER TRANSFERASE 16-DEC-13 4O1U TITLE CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE SYNTHASE MUTANT Y202C COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OK/SW-CL.29, TS, TYMS, TYSM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-80L KEYWDS DIMER-DIMER INTERFACE MODIFICATION, INACTIVE CONFORMATION, KEYWDS 2 METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.POZZI,S.MANGANI REVDAT 3 20-SEP-23 4O1U 1 REMARK REVDAT 2 01-MAR-23 4O1U 1 JRNL REMARK SEQADV LINK REVDAT 1 21-JAN-15 4O1U 0 JRNL AUTH L.COSTANTINO,S.FERRARI,M.SANTUCCI,O.M.H.SALO-AHEN, JRNL AUTH 2 E.CAROSATI,S.FRANCHINI,A.LAURIOLA,C.POZZI,M.TRANDE,G.GOZZI, JRNL AUTH 3 P.SAXENA,G.CANNAZZA,L.LOSI,D.CARDINALE,A.VENTURELLI, JRNL AUTH 4 A.QUOTADAMO,P.LINCIANO,L.TAGLIAZUCCHI,M.G.MOSCHELLA, JRNL AUTH 5 R.GUERRINI,S.PACIFICO,R.LUCIANI,F.GENOVESE,S.HENRICH, JRNL AUTH 6 S.ALBONI,N.SANTAREM,A.DA SILVA CORDEIRO,E.GIOVANNETTI, JRNL AUTH 7 G.J.PETERS,P.PINTON,A.RIMESSI,G.CRUCIANI,R.M.STROUD, JRNL AUTH 8 R.C.WADE,S.MANGANI,G.MARVERTI,D.D'ARCA,G.PONTERINI,M.P.COSTI JRNL TITL DESTABILIZERS OF THE THYMIDYLATE SYNTHASE HOMODIMER JRNL TITL 2 ACCELERATE ITS PROTEASOMAL DEGRADATION AND INHIBIT CANCER JRNL TITL 3 GROWTH. JRNL REF ELIFE V. 11 2022 JRNL REFN ESSN 2050-084X JRNL PMID 36475542 JRNL DOI 10.7554/ELIFE.73862 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 37663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4383 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5911 ; 1.435 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 6.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;39.871 ;23.365 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 745 ;16.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3294 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 2.029 ; 3.441 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2593 ; 3.319 ; 5.139 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2303 ; 2.696 ; 3.671 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6512 ; 8.068 ;28.682 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2851 -7.9379 27.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.0388 REMARK 3 T33: 0.1322 T12: -0.0272 REMARK 3 T13: -0.0205 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.3081 L22: 1.5912 REMARK 3 L33: 1.6581 L12: 0.3166 REMARK 3 L13: -0.0661 L23: -0.1676 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: -0.2122 S13: -0.1622 REMARK 3 S21: 0.1865 S22: -0.0305 S23: -0.0340 REMARK 3 S31: 0.1274 S32: 0.0536 S33: -0.0589 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0175 7.6954 3.8391 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.0365 REMARK 3 T33: 0.1327 T12: 0.0281 REMARK 3 T13: 0.0204 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.2223 L22: 1.4034 REMARK 3 L33: 1.7626 L12: -0.2212 REMARK 3 L13: 0.0617 L23: -0.1930 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 0.2020 S13: 0.1562 REMARK 3 S21: -0.1878 S22: -0.0352 S23: -0.0238 REMARK 3 S31: -0.1253 S32: 0.0523 S33: -0.0626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.936 REMARK 200 MONOCHROMATOR : SI(311), SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 48.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3N5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% SATURATED AMMONIUM SULFATE + 20MM REMARK 280 BME + 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.92333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.84667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 108 REMARK 465 TRP A 109 REMARK 465 ASP A 110 REMARK 465 ALA A 111 REMARK 465 ASN A 112 REMARK 465 GLY A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 ASP A 116 REMARK 465 PHE A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 LEU A 121 REMARK 465 GLY A 122 REMARK 465 PHE A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 GLY A 129 REMARK 465 MET A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 PRO B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 GLU B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 GLU B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 LYS B 104 REMARK 465 GLY B 105 REMARK 465 VAL B 106 REMARK 465 LYS B 107 REMARK 465 ILE B 108 REMARK 465 TRP B 109 REMARK 465 ASP B 110 REMARK 465 ALA B 111 REMARK 465 ASN B 112 REMARK 465 GLY B 113 REMARK 465 SER B 114 REMARK 465 ARG B 115 REMARK 465 ASP B 116 REMARK 465 PHE B 117 REMARK 465 LEU B 118 REMARK 465 ASP B 119 REMARK 465 SER B 120 REMARK 465 LEU B 121 REMARK 465 GLY B 122 REMARK 465 PHE B 123 REMARK 465 SER B 124 REMARK 465 THR B 125 REMARK 465 ARG B 126 REMARK 465 GLU B 127 REMARK 465 GLU B 128 REMARK 465 GLY B 129 REMARK 465 MET B 311 REMARK 465 ALA B 312 REMARK 465 VAL B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -164.57 -113.28 REMARK 500 ARG A 147 -94.27 -102.97 REMARK 500 SER A 154 112.14 -32.69 REMARK 500 ASN A 171 87.35 -150.16 REMARK 500 ASN A 205 -137.90 51.73 REMARK 500 ARG B 50 -27.50 -39.93 REMARK 500 ARG B 147 -91.34 -128.07 REMARK 500 ASN B 205 -143.56 51.95 REMARK 500 SER B 206 21.84 -79.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O1X RELATED DB: PDB DBREF 4O1U A 1 313 UNP P04818 TYSY_HUMAN 1 313 DBREF 4O1U B 1 313 UNP P04818 TYSY_HUMAN 1 313 SEQADV 4O1U MET A -11 UNP P04818 INITIATING METHIONINE SEQADV 4O1U ARG A -10 UNP P04818 EXPRESSION TAG SEQADV 4O1U GLY A -9 UNP P04818 EXPRESSION TAG SEQADV 4O1U SER A -8 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -7 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -6 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -5 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -4 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -3 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS A -2 UNP P04818 EXPRESSION TAG SEQADV 4O1U GLY A -1 UNP P04818 EXPRESSION TAG SEQADV 4O1U SER A 0 UNP P04818 EXPRESSION TAG SEQADV 4O1U CME A 202 UNP P04818 TYR 202 ENGINEERED MUTATION SEQADV 4O1U MET B -11 UNP P04818 INITIATING METHIONINE SEQADV 4O1U ARG B -10 UNP P04818 EXPRESSION TAG SEQADV 4O1U GLY B -9 UNP P04818 EXPRESSION TAG SEQADV 4O1U SER B -8 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -7 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -6 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -5 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -4 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -3 UNP P04818 EXPRESSION TAG SEQADV 4O1U HIS B -2 UNP P04818 EXPRESSION TAG SEQADV 4O1U GLY B -1 UNP P04818 EXPRESSION TAG SEQADV 4O1U SER B 0 UNP P04818 EXPRESSION TAG SEQADV 4O1U CME B 202 UNP P04818 TYR 202 ENGINEERED MUTATION SEQRES 1 A 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 325 PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU PRO SEQRES 3 A 325 PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO PRO SEQRES 4 A 325 HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS ILE SEQRES 5 A 325 LEU ARG SCH GLY VAL ARG LYS ASP ASP ARG THR GLY THR SEQRES 6 A 325 GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SER SEQRES 7 A 325 LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG VAL SEQRES 8 A 325 PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE ILE SEQRES 9 A 325 LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS GLY SEQRES 10 A 325 VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE LEU SEQRES 11 A 325 ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP LEU SEQRES 12 A 325 GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA SEQRES 13 A 325 GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN GLY SEQRES 14 A 325 VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS THR SEQRES 15 A 325 ASN PRO ASP ASP ARG ARG ILE ILE MET SCH ALA TRP ASN SEQRES 16 A 325 PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO SCH HIS SEQRES 17 A 325 ALA LEU CME GLN PHE CME VAL VAL ASN SER GLU LEU SER SEQRES 18 A 325 CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU GLY SEQRES 19 A 325 VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR TYR SEQRES 20 A 325 MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP PHE SEQRES 21 A 325 ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN HIS SEQRES 22 A 325 ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO ARG SEQRES 23 A 325 PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU LYS SEQRES 24 A 325 ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU GLY SEQRES 25 A 325 TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA VAL SEQRES 1 B 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 325 PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU PRO SEQRES 3 B 325 PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO PRO SEQRES 4 B 325 HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS ILE SEQRES 5 B 325 LEU ARG SCH GLY VAL ARG LYS ASP ASP ARG THR GLY THR SEQRES 6 B 325 GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SER SEQRES 7 B 325 LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG VAL SEQRES 8 B 325 PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE ILE SEQRES 9 B 325 LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS GLY SEQRES 10 B 325 VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE LEU SEQRES 11 B 325 ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP LEU SEQRES 12 B 325 GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA SEQRES 13 B 325 GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN GLY SEQRES 14 B 325 VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS THR SEQRES 15 B 325 ASN PRO ASP ASP ARG ARG ILE ILE MET SCH ALA TRP ASN SEQRES 16 B 325 PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO SCH HIS SEQRES 17 B 325 ALA LEU CME GLN PHE CME VAL VAL ASN SER GLU LEU SER SEQRES 18 B 325 CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU GLY SEQRES 19 B 325 VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR TYR SEQRES 20 B 325 MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP PHE SEQRES 21 B 325 ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN HIS SEQRES 22 B 325 ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO ARG SEQRES 23 B 325 PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU LYS SEQRES 24 B 325 ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU GLY SEQRES 25 B 325 TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA VAL MODRES 4O1U SCH A 43 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U SCH A 180 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U SCH A 195 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U CME A 199 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4O1U CME A 202 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4O1U SCH B 43 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U SCH B 180 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U SCH B 195 CYS S-METHYL-THIO-CYSTEINE MODRES 4O1U CME B 199 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4O1U CME B 202 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET SCH A 43 8 HET SCH A 180 8 HET SCH A 195 8 HET CME A 199 10 HET CME A 202 10 HET SCH B 43 8 HET SCH B 180 8 HET SCH B 195 8 HET CME B 199 10 HET CME B 202 10 HET SO4 A 401 5 HET SO4 A 402 5 HET EDO A 403 4 HET EDO A 404 4 HET CL A 405 1 HET SO4 A 406 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET EDO B 404 4 HET EDO B 405 4 HET CL B 406 1 HET CL B 407 1 HETNAM SCH S-METHYL-THIO-CYSTEINE HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SCH 6(C4 H9 N O2 S2) FORMUL 1 CME 4(C5 H11 N O3 S2) FORMUL 3 SO4 6(O4 S 2-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 7 CL 3(CL 1-) FORMUL 16 HOH *186(H2 O) HELIX 1 1 GLY A 29 GLY A 44 1 16 HELIX 2 2 PHE A 80 LYS A 93 1 14 HELIX 3 3 ALA A 98 SER A 103 1 6 HELIX 4 4 VAL A 134 HIS A 141 1 8 HELIX 5 5 ASP A 159 ASN A 171 1 13 HELIX 6 6 ASN A 183 LEU A 187 5 5 HELIX 7 7 LEU A 221 GLY A 242 1 22 HELIX 8 8 HIS A 261 LEU A 269 1 9 HELIX 9 9 LYS A 287 PHE A 291 5 5 HELIX 10 10 LYS A 292 GLU A 294 5 3 HELIX 11 11 GLY B 29 GLY B 44 1 16 HELIX 12 12 PHE B 80 LYS B 93 1 14 HELIX 13 13 ASN B 97 LEU B 101 5 5 HELIX 14 14 VAL B 134 HIS B 141 1 8 HELIX 15 15 ASP B 159 ASN B 171 1 13 HELIX 16 16 ASN B 183 LEU B 187 5 5 HELIX 17 17 LEU B 221 GLY B 242 1 22 HELIX 18 18 HIS B 261 LEU B 269 1 9 HELIX 19 19 LYS B 287 PHE B 291 5 5 HELIX 20 20 LYS B 292 GLU B 294 5 3 SHEET 1 A 6 VAL A 45 ASP A 48 0 SHEET 2 A 6 GLY A 54 SER A 66 -1 O SER A 57 N VAL A 45 SHEET 3 A 6 LYS A 244 TYR A 258 -1 O PHE A 248 N TYR A 65 SHEET 4 A 6 GLU A 207 ASP A 218 1 N LEU A 208 O GLY A 246 SHEET 5 A 6 ALA A 197 VAL A 204 -1 N CME A 202 O SER A 209 SHEET 6 A 6 ILE A 178 ALA A 181 -1 N MET A 179 O CME A 199 SHEET 1 B 2 LYS A 278 ILE A 281 0 SHEET 2 B 2 PHE A 296 GLU A 299 -1 O GLN A 297 N ARG A 280 SHEET 1 C 6 VAL B 45 ASP B 48 0 SHEET 2 C 6 GLY B 54 SER B 66 -1 O SER B 57 N VAL B 45 SHEET 3 C 6 LYS B 244 TYR B 258 -1 O PHE B 248 N TYR B 65 SHEET 4 C 6 GLU B 207 ASP B 218 1 N LEU B 208 O GLY B 246 SHEET 5 C 6 ALA B 197 VAL B 204 -1 N LEU B 198 O TYR B 213 SHEET 6 C 6 ILE B 178 ALA B 181 -1 N MET B 179 O CME B 199 SHEET 1 D 2 LYS B 278 ILE B 281 0 SHEET 2 D 2 PHE B 296 GLU B 299 -1 O GLU B 299 N LYS B 278 LINK C ARG A 42 N SCH A 43 1555 1555 1.34 LINK C SCH A 43 N GLY A 44 1555 1555 1.32 LINK C MET A 179 N SCH A 180 1555 1555 1.33 LINK C SCH A 180 N ALA A 181 1555 1555 1.33 LINK C PRO A 194 N SCH A 195 1555 1555 1.33 LINK C SCH A 195 N HIS A 196 1555 1555 1.33 LINK C LEU A 198 N CME A 199 1555 1555 1.33 LINK C CME A 199 N GLN A 200 1555 1555 1.33 LINK C PHE A 201 N CME A 202 1555 1555 1.33 LINK C CME A 202 N VAL A 203 1555 1555 1.32 LINK C ARG B 42 N SCH B 43 1555 1555 1.34 LINK C SCH B 43 N GLY B 44 1555 1555 1.32 LINK C MET B 179 N SCH B 180 1555 1555 1.33 LINK C SCH B 180 N ALA B 181 1555 1555 1.33 LINK C PRO B 194 N SCH B 195 1555 1555 1.33 LINK C SCH B 195 N HIS B 196 1555 1555 1.33 LINK C LEU B 198 N CME B 199 1555 1555 1.33 LINK C CME B 199 N GLN B 200 1555 1555 1.33 LINK C PHE B 201 N CME B 202 1555 1555 1.33 LINK C CME B 202 N VAL B 203 1555 1555 1.32 SITE 1 AC1 7 ARG A 78 ARG A 185 LEU A 189 PRO A 305 SITE 2 AC1 7 THR A 306 ARG B 176 HOH B 559 SITE 1 AC2 7 ARG A 50 ASN A 183 HIS A 196 ARG A 215 SITE 2 AC2 7 SER A 216 HOH A 552 ARG B 175 SITE 1 AC3 7 GLN A 36 GLN A 62 ALA A 63 VAL A 223 SITE 2 AC3 7 HIS A 250 LEU A 252 HOH A 590 SITE 1 AC4 2 ASP A 218 HOH A 555 SITE 1 AC5 3 ARG A 274 HIS A 304 HOH A 551 SITE 1 AC6 6 ARG A 176 ARG B 78 ARG B 185 LEU B 189 SITE 2 AC6 6 PRO B 305 THR B 306 SITE 1 AC7 3 ARG B 274 HIS B 304 HOH B 570 SITE 1 AC8 5 ARG A 175 ASN B 183 HIS B 196 ARG B 215 SITE 2 AC8 5 SER B 216 SITE 1 AC9 6 GLN B 36 GLN B 62 ALA B 63 VAL B 223 SITE 2 AC9 6 HIS B 250 HOH B 588 SITE 1 BC1 1 PHE B 142 SITE 1 BC2 1 ASP B 218 CRYST1 96.230 96.230 83.770 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010392 0.006000 0.000000 0.00000 SCALE2 0.000000 0.011999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011937 0.00000