HEADER RNA BINDING PROTEIN/RNA 16-DEC-13 4O26 TITLE CRYSTAL STRUCTURE OF THE TRBD DOMAIN OF TERT AND THE CR4/5 OF TR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRBD (UNP RESIDUES 318-572); COMPND 5 SYNONYM: TERT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TELOMERASE TR; COMPND 9 CHAIN: E, F; COMPND 10 FRAGMENT: CR4/5; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZIAS LATIPES; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE FISH; SOURCE 4 ORGANISM_TAXID: 8090; SOURCE 5 GENE: TERT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCARABXPRESS T7LAC; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ORYZIAS LATIPES; SOURCE 12 ORGANISM_TAXID: 8090; SOURCE 13 OTHER_DETAILS: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 SOURCE 14 RNA POLYMERASE KEYWDS TELOMERASE, TELOMERASE RNA, PROTEIN-RNA INTERACTION, RNA BINDING KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,J.WU,M.LEI REVDAT 3 17-JUL-19 4O26 1 REMARK REVDAT 2 18-JUN-14 4O26 1 JRNL REVDAT 1 07-MAY-14 4O26 0 JRNL AUTH J.HUANG,A.F.BROWN,J.WU,J.XUE,C.J.BLEY,D.P.RAND,L.WU,R.ZHANG, JRNL AUTH 2 J.J.CHEN,M.LEI JRNL TITL STRUCTURAL BASIS FOR PROTEIN-RNA RECOGNITION IN TELOMERASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 507 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24793650 JRNL DOI 10.1038/NSMB.2819 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9748 - 6.6671 0.99 2882 159 0.2495 0.2795 REMARK 3 2 6.6671 - 5.2952 1.00 2725 136 0.2700 0.3360 REMARK 3 3 5.2952 - 4.6268 1.00 2682 118 0.2108 0.2291 REMARK 3 4 4.6268 - 4.2042 1.00 2624 126 0.1772 0.2034 REMARK 3 5 4.2042 - 3.9031 1.00 2625 146 0.1800 0.2293 REMARK 3 6 3.9031 - 3.6731 1.00 2582 156 0.1943 0.2377 REMARK 3 7 3.6731 - 3.4893 1.00 2581 148 0.1993 0.2573 REMARK 3 8 3.4893 - 3.3375 1.00 2591 142 0.2106 0.2758 REMARK 3 9 3.3375 - 3.2090 1.00 2581 133 0.2152 0.2547 REMARK 3 10 3.2090 - 3.0983 1.00 2531 159 0.2522 0.3002 REMARK 3 11 3.0983 - 3.0010 1.00 2583 113 0.2527 0.2960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6219 REMARK 3 ANGLE : 1.018 8826 REMARK 3 CHIRALITY : 0.067 1023 REMARK 3 PLANARITY : 0.005 764 REMARK 3 DIHEDRAL : 21.010 2603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 316 THROUGH 572) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0860 66.3663 45.3591 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: -0.2370 REMARK 3 T33: 0.2828 T12: 0.7635 REMARK 3 T13: -0.0995 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.2350 L22: 0.2871 REMARK 3 L33: 0.1440 L12: -0.2607 REMARK 3 L13: -0.0579 L23: 0.1413 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: 0.0885 S13: -0.0525 REMARK 3 S21: -0.1242 S22: -0.1015 S23: -0.0500 REMARK 3 S31: -0.0900 S32: -0.0327 S33: -0.0165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 317 THROUGH 564) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5562 31.8397 30.0152 REMARK 3 T TENSOR REMARK 3 T11: 0.4529 T22: 0.3403 REMARK 3 T33: 0.4003 T12: 0.0630 REMARK 3 T13: -0.0258 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2523 L22: 0.5933 REMARK 3 L33: 0.4334 L12: 0.1952 REMARK 3 L13: -0.1289 L23: -0.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.0741 S12: -0.0499 S13: -0.0898 REMARK 3 S21: -0.1438 S22: 0.2609 S23: 0.1120 REMARK 3 S31: -0.0556 S32: -0.3316 S33: 0.0066 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 170 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3579 67.3194 28.3552 REMARK 3 T TENSOR REMARK 3 T11: 0.8525 T22: 0.7703 REMARK 3 T33: 0.9446 T12: 0.3490 REMARK 3 T13: -0.4043 T23: -0.1990 REMARK 3 L TENSOR REMARK 3 L11: 0.1839 L22: 0.1047 REMARK 3 L33: 0.3242 L12: 0.1272 REMARK 3 L13: 0.0101 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.2179 S13: 0.2368 REMARK 3 S21: -0.0645 S22: 0.1432 S23: -0.0658 REMARK 3 S31: -0.3118 S32: -0.3015 S33: -0.0278 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 170 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3525 18.2441 4.3657 REMARK 3 T TENSOR REMARK 3 T11: 1.6287 T22: 1.2883 REMARK 3 T33: 1.4611 T12: 0.1238 REMARK 3 T13: 0.1267 T23: -0.2835 REMARK 3 L TENSOR REMARK 3 L11: 0.0569 L22: 0.0500 REMARK 3 L33: 0.0818 L12: -0.0718 REMARK 3 L13: 0.0253 L23: -0.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.2064 S13: -0.0997 REMARK 3 S21: -0.3610 S22: -0.1389 S23: -0.1543 REMARK 3 S31: 0.0032 S32: 0.4547 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 608) OR CHAIN 'B' REMARK 3 AND (RESID 601 THROUGH 604) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5594 58.7138 51.0899 REMARK 3 T TENSOR REMARK 3 T11: 0.6562 T22: 0.4502 REMARK 3 T33: 0.5125 T12: 0.1900 REMARK 3 T13: 0.1012 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 0.2259 L22: 0.0130 REMARK 3 L33: 0.2755 L12: -0.0275 REMARK 3 L13: 0.1171 L23: -0.0410 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.0029 S13: 0.1335 REMARK 3 S21: 0.2155 S22: 0.2007 S23: -0.0861 REMARK 3 S31: 0.1609 S32: 0.1241 S33: 0.1326 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 701 THROUGH 721) OR CHAIN 'B' REMARK 3 AND (RESID 701 THROUGH 708) OR CHAIN 'E' AND (RESID REMARK 3 301 THROUGH 302) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2188 55.9432 45.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.2569 REMARK 3 T33: 0.1523 T12: 0.1126 REMARK 3 T13: 0.0453 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.0029 L22: 0.0346 REMARK 3 L33: 0.0039 L12: -0.0415 REMARK 3 L13: -0.0146 L23: 0.0314 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0021 S13: -0.0342 REMARK 3 S21: -0.0636 S22: -0.0111 S23: -0.0353 REMARK 3 S31: 0.0122 S32: 0.0162 S33: -0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30608 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 4.5, 1 M REMARK 280 AMMONIUM SULFATE, 0.3 M SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 238.68067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.34033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 238.68067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 119.34033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 238.68067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 119.34033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 238.68067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 119.34033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 359 REMARK 465 TYR A 360 REMARK 465 LEU A 361 REMARK 465 ASN A 362 REMARK 465 GLY A 363 REMARK 465 GLN A 364 REMARK 465 GLU A 365 REMARK 465 ARG A 366 REMARK 465 LYS A 466 REMARK 465 PHE A 467 REMARK 465 GLU A 468 REMARK 465 ARG A 469 REMARK 465 ILE A 470 REMARK 465 VAL A 534 REMARK 465 GLY A 535 REMARK 465 GLN A 536 REMARK 465 LYS A 537 REMARK 465 GLY B 316 REMARK 465 GLY B 357 REMARK 465 LEU B 358 REMARK 465 PRO B 359 REMARK 465 TYR B 360 REMARK 465 LEU B 361 REMARK 465 ASN B 362 REMARK 465 GLY B 363 REMARK 465 GLN B 364 REMARK 465 GLU B 365 REMARK 465 ARG B 366 REMARK 465 LYS B 367 REMARK 465 PRO B 368 REMARK 465 ALA B 473 REMARK 465 ARG B 490 REMARK 465 ARG B 491 REMARK 465 THR B 492 REMARK 465 ALA B 493 REMARK 465 GLY B 494 REMARK 465 ARG B 495 REMARK 465 PHE B 496 REMARK 465 MET B 565 REMARK 465 GLU B 566 REMARK 465 GLU B 567 REMARK 465 LEU B 568 REMARK 465 SER B 569 REMARK 465 PRO B 570 REMARK 465 ALA B 571 REMARK 465 GLN B 572 REMARK 465 U E 205 REMARK 465 C E 206 REMARK 465 G E 207 REMARK 465 U E 208 REMARK 465 U F 205 REMARK 465 C F 206 REMARK 465 G F 207 REMARK 465 U F 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 332 NE2 HIS B 389 2.16 REMARK 500 O GLY B 323 NE2 GLN B 545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' C E 220 OP1 C F 188 8565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U F 187 C2 - N1 - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 317 38.70 -158.48 REMARK 500 TYR A 321 33.18 70.89 REMARK 500 THR A 337 68.68 -63.10 REMARK 500 ALA A 339 48.09 70.88 REMARK 500 PHE A 355 -132.88 -127.69 REMARK 500 ALA A 410 -18.86 94.33 REMARK 500 SER A 464 -156.95 -92.66 REMARK 500 MET A 476 32.17 -84.60 REMARK 500 ALA A 493 36.23 -84.70 REMARK 500 TYR B 321 67.22 71.35 REMARK 500 THR B 337 83.46 -68.49 REMARK 500 ALA B 339 44.72 -161.59 REMARK 500 PHE B 355 -58.76 -131.78 REMARK 500 VAL B 405 -178.41 -68.73 REMARK 500 LEU B 407 2.43 59.37 REMARK 500 ALA B 410 -54.57 -128.92 REMARK 500 GLU B 414 -148.42 -108.02 REMARK 500 LEU B 475 35.41 -83.74 REMARK 500 MET B 476 36.07 -97.34 REMARK 500 TRP B 486 -12.23 -49.57 REMARK 500 LEU B 516 -63.76 -102.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 477 LYS A 478 137.01 REMARK 500 TRP B 477 LYS B 478 148.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 604 DBREF 4O26 A 318 572 UNP Q1PS67 Q1PS67_ORYLA 318 572 DBREF 4O26 B 318 572 UNP Q1PS67 Q1PS67_ORYLA 318 572 DBREF 4O26 E 170 220 PDB 4O26 4O26 170 220 DBREF 4O26 F 170 220 PDB 4O26 4O26 170 220 SEQADV 4O26 GLY A 316 UNP Q1PS67 EXPRESSION TAG SEQADV 4O26 SER A 317 UNP Q1PS67 EXPRESSION TAG SEQADV 4O26 GLY B 316 UNP Q1PS67 EXPRESSION TAG SEQADV 4O26 SER B 317 UNP Q1PS67 EXPRESSION TAG SEQRES 1 A 257 GLY SER GLY PHE LEU TYR GLY GLY ARG GLY MET HIS GLY SEQRES 2 A 257 PHE CYS LEU ASN ARG LYS ARG ARG THR ALA ALA GLY PRO SEQRES 3 A 257 ARG ARG LEU GLN GLY GLN ASP LEU VAL ARG LEU VAL PHE SEQRES 4 A 257 PHE GLU GLY LEU PRO TYR LEU ASN GLY GLN GLU ARG LYS SEQRES 5 A 257 PRO LYS LYS LEU PRO LEU ARG TYR PHE ASN MET VAL PRO SEQRES 6 A 257 VAL PHE GLY ARG LEU LEU GLN ARG HIS ARG LYS CYS ARG SEQRES 7 A 257 TYR SER SER VAL LEU HIS ARG MET CYS PRO VAL VAL GLU SEQRES 8 A 257 LEU SER ARG ALA ALA GLN GLY GLU LEU SER SER LEU ILE SEQRES 9 A 257 PRO GLN HIS CYS ALA PRO HIS ARG VAL TYR LEU PHE VAL SEQRES 10 A 257 ARG GLU CYS LEU THR ALA VAL VAL PRO GLU GLU LEU TRP SEQRES 11 A 257 GLY SER ASP HIS ASN ARG LEU GLN PHE PHE SER ARG VAL SEQRES 12 A 257 ARG GLY PHE LEU LYS SER GLY LYS PHE GLU ARG ILE SER SEQRES 13 A 257 VAL ALA GLU LEU MET TRP LYS ILE LYS VAL MET ASP CYS SEQRES 14 A 257 ASP TRP LEU LYS LEU ARG ARG THR ALA GLY ARG PHE PRO SEQRES 15 A 257 PRO SER GLU LEU ALA TYR ARG THR ARG ILE LEU SER GLN SEQRES 16 A 257 PHE LEU THR TRP LEU LEU ASP GLY PHE VAL VAL GLY LEU SEQRES 17 A 257 VAL ARG ALA CYS PHE TYR ALA THR GLU SER VAL GLY GLN SEQRES 18 A 257 LYS ASN ALA ILE ARG PHE TYR ARG GLN GLU VAL TRP SER SEQRES 19 A 257 LYS LEU GLN ASP LEU ALA PHE ARG ARG HIS ILE ALA LYS SEQRES 20 A 257 GLY GLU MET GLU GLU LEU SER PRO ALA GLN SEQRES 1 B 257 GLY SER GLY PHE LEU TYR GLY GLY ARG GLY MET HIS GLY SEQRES 2 B 257 PHE CYS LEU ASN ARG LYS ARG ARG THR ALA ALA GLY PRO SEQRES 3 B 257 ARG ARG LEU GLN GLY GLN ASP LEU VAL ARG LEU VAL PHE SEQRES 4 B 257 PHE GLU GLY LEU PRO TYR LEU ASN GLY GLN GLU ARG LYS SEQRES 5 B 257 PRO LYS LYS LEU PRO LEU ARG TYR PHE ASN MET VAL PRO SEQRES 6 B 257 VAL PHE GLY ARG LEU LEU GLN ARG HIS ARG LYS CYS ARG SEQRES 7 B 257 TYR SER SER VAL LEU HIS ARG MET CYS PRO VAL VAL GLU SEQRES 8 B 257 LEU SER ARG ALA ALA GLN GLY GLU LEU SER SER LEU ILE SEQRES 9 B 257 PRO GLN HIS CYS ALA PRO HIS ARG VAL TYR LEU PHE VAL SEQRES 10 B 257 ARG GLU CYS LEU THR ALA VAL VAL PRO GLU GLU LEU TRP SEQRES 11 B 257 GLY SER ASP HIS ASN ARG LEU GLN PHE PHE SER ARG VAL SEQRES 12 B 257 ARG GLY PHE LEU LYS SER GLY LYS PHE GLU ARG ILE SER SEQRES 13 B 257 VAL ALA GLU LEU MET TRP LYS ILE LYS VAL MET ASP CYS SEQRES 14 B 257 ASP TRP LEU LYS LEU ARG ARG THR ALA GLY ARG PHE PRO SEQRES 15 B 257 PRO SER GLU LEU ALA TYR ARG THR ARG ILE LEU SER GLN SEQRES 16 B 257 PHE LEU THR TRP LEU LEU ASP GLY PHE VAL VAL GLY LEU SEQRES 17 B 257 VAL ARG ALA CYS PHE TYR ALA THR GLU SER VAL GLY GLN SEQRES 18 B 257 LYS ASN ALA ILE ARG PHE TYR ARG GLN GLU VAL TRP SER SEQRES 19 B 257 LYS LEU GLN ASP LEU ALA PHE ARG ARG HIS ILE ALA LYS SEQRES 20 B 257 GLY GLU MET GLU GLU LEU SER PRO ALA GLN SEQRES 1 E 51 G G A A C G C C G C G G U SEQRES 2 E 51 C A G C U C G G C U G C U SEQRES 3 E 51 G C G A A G A G U U C G U SEQRES 4 E 51 C U C U G U U G U U C C SEQRES 1 F 51 G G A A C G C C G C G G U SEQRES 2 F 51 C A G C U C G G C U G C U SEQRES 3 F 51 G C G A A G A G U U C G U SEQRES 4 F 51 C U C U G U U G U U C C HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 12(O4 S 2-) FORMUL 17 HOH *31(H2 O) HELIX 1 1 GLY A 325 ASN A 332 5 8 HELIX 2 2 GLN A 345 PHE A 355 1 11 HELIX 3 3 PRO A 372 ASN A 377 1 6 HELIX 4 4 MET A 378 CYS A 392 1 15 HELIX 5 5 ARG A 393 CYS A 402 1 10 HELIX 6 6 GLU A 414 LEU A 418 5 5 HELIX 7 7 ALA A 424 VAL A 440 1 17 HELIX 8 8 PRO A 441 GLY A 446 1 6 HELIX 9 9 SER A 447 LEU A 462 1 16 HELIX 10 10 LYS A 480 LYS A 488 5 9 HELIX 11 11 PRO A 497 GLY A 518 1 22 HELIX 12 12 GLY A 518 PHE A 528 1 11 HELIX 13 13 GLN A 545 SER A 569 1 25 HELIX 14 14 PHE B 329 ARG B 333 5 5 HELIX 15 15 GLN B 345 PHE B 355 1 11 HELIX 16 16 PRO B 372 ASN B 377 1 6 HELIX 17 17 PRO B 380 CYS B 392 1 13 HELIX 18 18 ARG B 393 CYS B 402 1 10 HELIX 19 19 GLU B 414 ILE B 419 1 6 HELIX 20 20 ALA B 424 VAL B 440 1 17 HELIX 21 21 PRO B 441 GLY B 446 1 6 HELIX 22 22 ASP B 448 GLY B 465 1 18 HELIX 23 23 LYS B 480 LYS B 488 5 9 HELIX 24 24 PRO B 498 GLY B 518 1 21 HELIX 25 25 PHE B 519 PHE B 528 1 10 HELIX 26 26 ARG B 544 ARG B 557 1 14 SHEET 1 A 2 LYS A 334 ARG A 335 0 SHEET 2 A 2 ARG A 342 ARG A 343 -1 O ARG A 342 N ARG A 335 SHEET 1 B 2 TYR A 529 GLU A 532 0 SHEET 2 B 2 ILE A 540 TYR A 543 -1 O TYR A 543 N TYR A 529 SHEET 1 C 2 TYR B 529 GLU B 532 0 SHEET 2 C 2 ILE B 540 TYR B 543 -1 O ARG B 541 N THR B 531 SSBOND 1 CYS A 402 CYS A 423 1555 1555 2.03 SSBOND 2 CYS B 402 CYS B 423 1555 1555 2.04 SITE 1 AC1 3 ARG A 343 GLN A 387 ARG A 390 SITE 1 AC2 5 ARG A 384 ARG A 388 PRO A 441 GLU A 442 SITE 2 AC2 5 GLU A 443 SITE 1 AC3 7 VAL A 405 PRO A 420 GLN A 421 HIS A 422 SITE 2 AC3 7 HIS A 426 ARG A 427 LEU A 430 SITE 1 AC4 5 ARG A 324 HIS A 327 PHE A 556 LYS B 466 SITE 2 AC4 5 ARG B 469 SITE 1 AC5 2 HIS A 559 LYS A 562 SITE 1 AC6 3 ARG A 393 TYR A 394 SER A 395 SITE 1 AC7 6 TYR A 429 ARG A 433 ARG A 459 ARG B 324 SITE 2 AC7 6 SER B 549 GLN B 552 SITE 1 AC8 4 MET A 326 SER A 395 SER A 549 ASP A 553 SITE 1 AC9 5 SER A 408 ARG A 409 ARG B 557 HIS B 559 SITE 2 AC9 5 HOH B 703 SITE 1 BC1 4 HIS B 559 ILE B 560 ALA B 561 LYS B 562 SITE 1 BC2 4 HIS B 399 PRO B 403 VAL B 404 ARG B 544 SITE 1 BC3 4 CYS B 392 ARG B 393 TYR B 394 SER B 395 CRYST1 118.092 118.092 358.021 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008468 0.004889 0.000000 0.00000 SCALE2 0.000000 0.009778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002793 0.00000