HEADER PROTEIN TRANSPORT 18-DEC-13 4O3V TITLE CRYSTAL STRUCTURE OF A VIRB8-LIKE PROTEIN OF TYPE IV SECRETION SYSTEM TITLE 2 FROM RICKETTSIA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRB8-LIKE PROTEIN OF TYPE IV SECRETION SYSTEM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA TYPHI; SOURCE 3 ORGANISM_TAXID: 257363; SOURCE 4 STRAIN: VR-144 / WILLMINGTON; SOURCE 5 GENE: RT0278; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PBG1861 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, SECRETION SYSTEM, TRWG, MURINE, TYPHUS, KEYWDS 4 VIRULENCE, PATHOGENESIS, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 28-FEB-24 4O3V 1 REMARK SEQADV REVDAT 4 29-JUN-16 4O3V 1 REMARK REVDAT 3 23-MAR-16 4O3V 1 JRNL REVDAT 2 16-DEC-15 4O3V 1 JRNL REVDAT 1 05-MAR-14 4O3V 0 JRNL AUTH J.J.GILLESPIE,I.Q.PHAN,H.SCHEIB,S.SUBRAMANIAN,T.E.EDWARDS, JRNL AUTH 2 S.S.LEHMAN,H.PIITULAINEN,M.S.RAHMAN,K.E.RENNOLL-BANKERT, JRNL AUTH 3 B.L.STAKER,S.TAIRA,R.STACY,P.J.MYLER,A.F.AZAD,A.T.PULLIAINEN JRNL TITL STRUCTURAL INSIGHT INTO HOW BACTERIA PREVENT INTERFERENCE JRNL TITL 2 BETWEEN MULTIPLE DIVERGENT TYPE IV SECRETION SYSTEMS. JRNL REF MBIO V. 6 01867 2015 JRNL REFN ESSN 2150-7511 JRNL PMID 26646013 JRNL DOI 10.1128/MBIO.01867-15 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.J.GILLESPIE,I.Q.PHAN,T.P.DRISCOLL,M.L.GUILLOTTE, REMARK 1 AUTH 2 S.S.LEHMAN,K.E.RENNOLL-BANKERT,S.SUBRAMANIAN,M.BEIER-SEXTON, REMARK 1 AUTH 3 P.J.MYLER,M.S.RAHMAN,A.F.AZAD REMARK 1 TITL THE RICKETTSIA TYPE IV SECRETION SYSTEM: UNREALIZED REMARK 1 TITL 2 COMPLEXITY MIRED BY GENE FAMILY EXPANSION. REMARK 1 REF PATHOG DIS 2016 REMARK 1 PMID 27307105 REMARK 1 DOI 10.1093/FEMSPD/FTW058 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 2.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2363 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2228 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3222 ; 1.464 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5098 ; 0.805 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;32.052 ;25.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;12.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2748 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 587 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 2.009 ; 2.206 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1137 ; 2.006 ; 2.202 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 3.160 ; 3.272 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4634 63.0466 24.8894 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: 0.0248 REMARK 3 T33: 0.0640 T12: 0.0136 REMARK 3 T13: -0.0203 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.4806 L22: 1.2100 REMARK 3 L33: 0.6988 L12: 0.4288 REMARK 3 L13: -0.7077 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.1208 S13: -0.1953 REMARK 3 S21: 0.1006 S22: 0.0169 S23: -0.1572 REMARK 3 S31: 0.0536 S32: 0.0632 S33: 0.0142 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9320 54.0984 4.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.0296 REMARK 3 T33: 0.0498 T12: -0.0246 REMARK 3 T13: 0.0195 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.9004 L22: 1.2557 REMARK 3 L33: 0.8514 L12: -0.4073 REMARK 3 L13: -0.2108 L23: 0.3254 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0220 S13: 0.1000 REMARK 3 S21: -0.1222 S22: 0.0480 S23: -0.1492 REMARK 3 S31: -0.0814 S32: 0.0904 S33: -0.0518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4O3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RITYA.18390.A.B2 PS01633 AT 11.2 MG/ML REMARK 280 AGAINST CSHT A2, 0.4 M POTASSIUM SODIUM TARTRATE, CRYO-PROTECTED REMARK 280 WITH AL'S OIL, CRYSTAL GREW OVER 7 MONTHS, CRYSTAL TRACKING ID REMARK 280 250519A2, UNIQUE PUCK ID ZUK7-16, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.84000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.95500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.84000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.95500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 52 REMARK 465 ALA A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 HIS A 59 REMARK 465 MET A 60 REMARK 465 LEU A 61 REMARK 465 PRO A 62 REMARK 465 ILE A 63 REMARK 465 GLN A 64 REMARK 465 LYS A 65 REMARK 465 LYS A 66 REMARK 465 VAL A 67 REMARK 465 GLY A 68 REMARK 465 TYR A 69 REMARK 465 LEU A 70 REMARK 465 ILE A 71 REMARK 465 LYS A 72 REMARK 465 ASP A 73 REMARK 465 ASP A 74 REMARK 465 SER A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 GLN A 78 REMARK 465 ALA A 79 REMARK 465 THR A 80 REMARK 465 ILE A 81 REMARK 465 THR A 82 REMARK 465 ASN A 83 REMARK 465 THR A 84 REMARK 465 LYS A 85 REMARK 465 TYR A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 LEU A 89 REMARK 465 SER A 207 REMARK 465 THR A 208 REMARK 465 LEU A 209 REMARK 465 HIS A 210 REMARK 465 GLN A 232 REMARK 465 MET B 52 REMARK 465 ALA B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 HIS B 58 REMARK 465 HIS B 59 REMARK 465 MET B 60 REMARK 465 LEU B 61 REMARK 465 PRO B 62 REMARK 465 ILE B 63 REMARK 465 GLN B 64 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 VAL B 67 REMARK 465 GLY B 68 REMARK 465 TYR B 69 REMARK 465 LEU B 70 REMARK 465 ILE B 71 REMARK 465 LYS B 72 REMARK 465 ASP B 73 REMARK 465 ASP B 74 REMARK 465 SER B 75 REMARK 465 GLU B 76 REMARK 465 LYS B 77 REMARK 465 GLN B 78 REMARK 465 ALA B 79 REMARK 465 THR B 80 REMARK 465 ILE B 81 REMARK 465 THR B 82 REMARK 465 ASN B 83 REMARK 465 THR B 84 REMARK 465 LYS B 85 REMARK 465 TYR B 86 REMARK 465 SER B 87 REMARK 465 THR B 88 REMARK 465 LEU B 89 REMARK 465 THR B 208 REMARK 465 LEU B 209 REMARK 465 GLN B 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 ASN A 183 CG OD1 ND2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 TYR B 155 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 183 CG OD1 ND2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 SER B 207 OG REMARK 470 HIS B 210 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 GLN B 231 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 396 O HOH A 429 2.14 REMARK 500 OD1 ASN B 103 O HOH B 488 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 152 -125.80 53.23 REMARK 500 ASN A 230 -78.90 -81.08 REMARK 500 GLN B 152 -125.10 49.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 90 ASN A 91 142.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LSO RELATED DB: PDB REMARK 900 BARTONELLA QUINTANA VIRB8 REMARK 900 RELATED ID: 2BHM RELATED DB: PDB REMARK 900 BRUCELLA SUIS VIRB8 REMARK 900 RELATED ID: 4MEI RELATED DB: PDB REMARK 900 BARTONELLA TRIBOCORUM VIRB8 REMARK 900 RELATED ID: 4KZ1 RELATED DB: PDB REMARK 900 BARTONELLA GRAHAMII VIRB8 REMARK 900 RELATED ID: SSGCID-RITYA.18390.A RELATED DB: TARGETTRACK DBREF 4O3V A 61 232 UNP Q68X84 Q68X84_RICTY 61 232 DBREF 4O3V B 61 232 UNP Q68X84 Q68X84_RICTY 61 232 SEQADV 4O3V MET A 52 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V ALA A 53 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 54 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 55 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 56 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 57 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 58 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS A 59 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V MET A 60 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V MET B 52 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V ALA B 53 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 54 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 55 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 56 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 57 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 58 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V HIS B 59 UNP Q68X84 EXPRESSION TAG SEQADV 4O3V MET B 60 UNP Q68X84 EXPRESSION TAG SEQRES 1 A 181 MET ALA HIS HIS HIS HIS HIS HIS MET LEU PRO ILE GLN SEQRES 2 A 181 LYS LYS VAL GLY TYR LEU ILE LYS ASP ASP SER GLU LYS SEQRES 3 A 181 GLN ALA THR ILE THR ASN THR LYS TYR SER THR LEU ALA SEQRES 4 A 181 ASN PRO TYR ILE SER VAL ALA ASN ILE MET LEU GLN ASN SEQRES 5 A 181 TYR VAL LYS GLN ARG GLU LYS TYR ASN TYR ASP THR LEU SEQRES 6 A 181 LYS GLU GLN PHE THR PHE ILE LYS ASN ALA SER THR SER SEQRES 7 A 181 ILE VAL TYR MET GLN PHE ALA ASN PHE MET ASN ILE ASP SEQRES 8 A 181 ASN SER LEU SER PRO VAL ILE ARG TYR GLN LYS LEU TYR SEQRES 9 A 181 ARG ARG SER ILE ASN ILE ILE SER ILE ASN ASN ILE ASN SEQRES 10 A 181 ASN ASN GLU ALA THR VAL THR PHE GLU SER LEU ALA GLN SEQRES 11 A 181 ASN ASN THR GLY GLU ILE LEU GLU ASN MET LEU TRP GLU SEQRES 12 A 181 ALA LYS ILE GLY PHE ILE MET ASP SER ILE SER THR SER SEQRES 13 A 181 THR LEU HIS ASN MET PRO PHE HIS PHE ILE VAL THR SER SEQRES 14 A 181 TYR LYS LEU LYS LEU LEU ARG ASN LYS ASN GLN GLN SEQRES 1 B 181 MET ALA HIS HIS HIS HIS HIS HIS MET LEU PRO ILE GLN SEQRES 2 B 181 LYS LYS VAL GLY TYR LEU ILE LYS ASP ASP SER GLU LYS SEQRES 3 B 181 GLN ALA THR ILE THR ASN THR LYS TYR SER THR LEU ALA SEQRES 4 B 181 ASN PRO TYR ILE SER VAL ALA ASN ILE MET LEU GLN ASN SEQRES 5 B 181 TYR VAL LYS GLN ARG GLU LYS TYR ASN TYR ASP THR LEU SEQRES 6 B 181 LYS GLU GLN PHE THR PHE ILE LYS ASN ALA SER THR SER SEQRES 7 B 181 ILE VAL TYR MET GLN PHE ALA ASN PHE MET ASN ILE ASP SEQRES 8 B 181 ASN SER LEU SER PRO VAL ILE ARG TYR GLN LYS LEU TYR SEQRES 9 B 181 ARG ARG SER ILE ASN ILE ILE SER ILE ASN ASN ILE ASN SEQRES 10 B 181 ASN ASN GLU ALA THR VAL THR PHE GLU SER LEU ALA GLN SEQRES 11 B 181 ASN ASN THR GLY GLU ILE LEU GLU ASN MET LEU TRP GLU SEQRES 12 B 181 ALA LYS ILE GLY PHE ILE MET ASP SER ILE SER THR SER SEQRES 13 B 181 THR LEU HIS ASN MET PRO PHE HIS PHE ILE VAL THR SER SEQRES 14 B 181 TYR LYS LEU LYS LEU LEU ARG ASN LYS ASN GLN GLN HET SRT B 301 10 HETNAM SRT S,R MESO-TARTARIC ACID FORMUL 3 SRT C4 H6 O6 FORMUL 4 HOH *318(H2 O) HELIX 1 1 PRO A 92 LYS A 110 1 19 HELIX 2 2 ASN A 112 ASP A 114 5 3 HELIX 3 3 THR A 115 SER A 127 1 13 HELIX 4 4 THR A 128 ASN A 140 1 13 HELIX 5 5 SER A 146 GLN A 152 1 7 HELIX 6 6 PRO B 92 LYS B 110 1 19 HELIX 7 7 ASN B 112 ASP B 114 5 3 HELIX 8 8 THR B 115 ALA B 126 1 12 HELIX 9 9 THR B 128 ASN B 140 1 13 HELIX 10 10 SER B 146 GLN B 152 1 7 HELIX 11 11 MET B 212 PHE B 216 5 5 SHEET 1 A 4 ARG A 156 ASN A 168 0 SHEET 2 A 4 GLU A 171 GLN A 181 -1 O LEU A 179 N SER A 158 SHEET 3 A 4 ILE A 187 MET A 201 -1 O ILE A 197 N ALA A 172 SHEET 4 A 4 PHE A 216 ASN A 228 -1 O LYS A 222 N LYS A 196 SHEET 1 B 4 ARG B 156 ASN B 168 0 SHEET 2 B 4 GLU B 171 GLN B 181 -1 O LEU B 179 N SER B 158 SHEET 3 B 4 ILE B 187 ILE B 200 -1 O ILE B 197 N ALA B 172 SHEET 4 B 4 ILE B 217 ASN B 228 -1 O LYS B 222 N LYS B 196 SITE 1 AC1 11 LYS A 110 ARG A 156 LYS B 106 SER B 158 SITE 2 AC1 11 ILE B 159 HOH B 469 HOH B 486 HOH B 487 SITE 3 AC1 11 HOH B 489 HOH B 531 HOH B 541 CRYST1 117.680 117.680 83.820 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011930 0.00000