HEADER TRANSFERASE 18-DEC-13 4O4E TITLE CRYSTAL STRUCTURE OF AN INOSITOL HEXAKISPHOSPHATE KINASE EHIP6KA IN TITLE 2 COMPLEXED WITH ATP AND INS(1,3,4,5,6)P5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-270; COMPND 5 EC: 2.7.4.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 885318; SOURCE 4 STRAIN: HM-1:IMSS; SOURCE 5 GENE: EHI7A_103520; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTICEXPRESS (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST566 KEYWDS PDGK KINASE, INOSITOL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,S.B.SHEARS REVDAT 3 20-SEP-23 4O4E 1 REMARK SEQADV LINK REVDAT 2 09-JUL-14 4O4E 1 JRNL REVDAT 1 18-JUN-14 4O4E 0 JRNL AUTH H.WANG,E.F.DEROSE,R.E.LONDON,S.B.SHEARS JRNL TITL IP6K STRUCTURE AND THE MOLECULAR DETERMINANTS OF CATALYTIC JRNL TITL 2 SPECIFICITY IN AN INOSITOL PHOSPHATE KINASE FAMILY. JRNL REF NAT COMMUN V. 5 4178 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24956979 JRNL DOI 10.1038/NCOMMS5178 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 22265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2206 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2032 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2989 ; 1.729 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4724 ; 0.838 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 6.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;30.085 ;24.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;14.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2380 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 1.790 ; 2.163 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1004 ; 1.789 ; 2.158 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1259 ; 2.903 ; 3.222 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1260 ; 2.902 ; 3.227 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 2.307 ; 2.563 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1198 ; 2.290 ; 2.553 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1721 ; 3.743 ; 3.721 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2634 ; 7.438 ;19.055 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2569 ; 7.251 ;18.527 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 270 REMARK 3 RESIDUE RANGE : A 401 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5498 -1.1341 12.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0456 REMARK 3 T33: 0.0618 T12: 0.0100 REMARK 3 T13: 0.0263 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.7394 L22: 0.7304 REMARK 3 L33: 0.2817 L12: -0.0783 REMARK 3 L13: 0.0845 L23: -0.2310 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0788 S13: 0.0378 REMARK 3 S21: 0.0211 S22: 0.0830 S23: 0.0885 REMARK 3 S31: -0.0613 S32: 0.0109 S33: -0.0821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23544 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 42.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52700 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 4O4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NAH2PO4 IN THE PRESENCE OF 10 MM REMARK 280 ATP,5 MM IP3, 20 MM MGCL2. THE CRYSTALS WERE FURTHER SOAKED REMARK 280 UNDER 22% (W/V) PEG 3350, 10 MM MGCL2, 10 MM ATP, 0.1 M SODIUM REMARK 280 ACETATE, PH 5.2, 10 MM IP5 FOR 3 DAYS, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.49950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.74400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.49950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.23200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.23200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.49950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.74400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.49950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.48800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.49950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.48800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.49950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 83.23200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 27.74400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.49950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.74400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 83.23200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.49950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.49950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.48800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 536 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 29 REMARK 465 HIS A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 157 -80.35 -128.43 REMARK 500 ASP A 231 83.32 69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD2 REMARK 620 2 ATP A 404 O2G 99.4 REMARK 620 3 HOH A 623 O 92.0 168.3 REMARK 620 4 HOH A 636 O 104.0 78.5 96.3 REMARK 620 5 HOH A 639 O 174.3 80.9 87.5 70.5 REMARK 620 6 HOH A 667 O 79.9 98.8 85.6 175.6 105.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5MY A 403 O34 REMARK 620 2 ATP A 404 O1B 87.6 REMARK 620 3 ATP A 404 O2G 163.3 79.9 REMARK 620 4 HOH A 636 O 92.8 81.8 74.6 REMARK 620 5 HOH A 639 O 100.6 166.0 89.8 86.4 REMARK 620 6 HOH A 640 O 89.3 106.6 104.7 171.5 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4B RELATED DB: PDB REMARK 900 RELATED ID: 4O4C RELATED DB: PDB REMARK 900 RELATED ID: 4O4D RELATED DB: PDB REMARK 900 RELATED ID: 4O4F RELATED DB: PDB DBREF 4O4E A 27 270 UNP N9UNA8 N9UNA8_ENTHI 27 270 SEQADV 4O4E GLY A 23 UNP N9UNA8 EXPRESSION TAG SEQADV 4O4E SER A 24 UNP N9UNA8 EXPRESSION TAG SEQADV 4O4E PHE A 25 UNP N9UNA8 EXPRESSION TAG SEQADV 4O4E THR A 26 UNP N9UNA8 EXPRESSION TAG SEQRES 1 A 248 GLY SER PHE THR GLN GLN LEU HIS PRO ASP GLY GLN TYR SEQRES 2 A 248 LEU LEU LYS PRO CYS LEU SER HIS ARG GLU ARG ASP PHE SEQRES 3 A 248 TYR LEU HIS ILE LYS ASP ASP LYS GLU TRP THR GLY THR SEQRES 4 A 248 GLY ILE ILE PRO LYS PHE TYR GLY VAL GLU LEU HIS GLU SEQRES 5 A 248 PHE GLY PHE GLY GLU LEU GLU PHE ILE ARG MET GLU ASN SEQRES 6 A 248 LEU MET TYR LYS TYR LYS ARG PRO PHE VAL LEU ASP LEU SEQRES 7 A 248 LYS ILE GLY THR GLN THR TRP ASP PRO GLU THR ALA SER SEQRES 8 A 248 SER LYS MET LYS LYS ARG LEU VAL VAL ASP SER THR SER SEQRES 9 A 248 THR THR THR SER LEU GLY VAL ARG PHE SER GLY MET GLU SEQRES 10 A 248 ARG ASN ILE GLY GLU GLU LYS PRO ILE LEU TYR SER ARG SEQRES 11 A 248 TYR LEU CYS THR HIS GLU VAL ASN THR ARG ASP SER LEU SEQRES 12 A 248 LYS GLU TYR ILE LYS LEU PHE PHE ASN ASP GLY LYS LYS SEQRES 13 A 248 TYR ARG LYS GLU LEU VAL PRO TYR PHE ILE SER GLN LEU SEQRES 14 A 248 ASP LYS MET ILE GLU VAL MET LYS LYS ARG GLU TYR LYS SEQRES 15 A 248 MET PHE SER SER SER VAL LEU PHE VAL TYR ASP SER THR SEQRES 16 A 248 THR THR LEU GLU ASP LYS LYS TYR ASN CYS LYS MET ILE SEQRES 17 A 248 ASP PHE ALA HIS ASN TRP ILE LEU SER GLU GLU GLU CYS SEQRES 18 A 248 THR VAL GLU ASP GLY PHE LEU PHE GLY LEU ASN ASN LEU SEQRES 19 A 248 LYS SER ILE LEU GLU ASP ILE GLU ASN GLU PHE LYS SER SEQRES 20 A 248 LEU HET MG A 401 1 HET MG A 402 1 HET 5MY A 403 32 HET ATP A 404 31 HET PO4 A 405 5 HETNAM MG MAGNESIUM ION HETNAM 5MY MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 5MY C6 H17 O21 P5 FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *195(H2 O) HELIX 1 1 HIS A 43 LYS A 53 1 11 HELIX 2 2 ASP A 55 GLY A 60 1 6 HELIX 3 3 ALA A 112 SER A 126 1 15 HELIX 4 4 THR A 127 GLY A 132 1 6 HELIX 5 5 SER A 151 HIS A 157 5 7 HELIX 6 6 THR A 161 PHE A 173 1 13 HELIX 7 7 ARG A 180 GLU A 182 5 3 HELIX 8 8 LEU A 183 LYS A 199 1 17 HELIX 9 9 THR A 219 LYS A 223 5 5 HELIX 10 10 GLY A 248 SER A 269 1 22 SHEET 1 A 3 TYR A 35 PRO A 39 0 SHEET 2 A 3 GLY A 78 GLU A 86 -1 O ILE A 83 N LYS A 38 SHEET 3 A 3 PHE A 67 PHE A 75 -1 N TYR A 68 O ARG A 84 SHEET 1 B 5 ILE A 148 TYR A 150 0 SHEET 2 B 5 VAL A 133 ARG A 140 -1 N MET A 138 O TYR A 150 SHEET 3 B 5 PRO A 95 ILE A 102 -1 N ASP A 99 O GLY A 137 SHEET 4 B 5 SER A 209 ASP A 215 -1 O PHE A 212 N LEU A 98 SHEET 5 B 5 TYR A 225 ILE A 230 -1 O LYS A 228 N LEU A 211 SHEET 1 C 2 TYR A 203 MET A 205 0 SHEET 2 C 2 ASN A 235 ILE A 237 -1 O TRP A 236 N LYS A 204 LINK OD2 ASP A 231 MG MG A 402 1555 1555 2.17 LINK MG MG A 401 O34 5MY A 403 1555 1555 2.17 LINK MG MG A 401 O1B ATP A 404 1555 1555 2.00 LINK MG MG A 401 O2G ATP A 404 1555 1555 2.33 LINK MG MG A 401 O HOH A 636 1555 1555 2.10 LINK MG MG A 401 O HOH A 639 1555 1555 2.05 LINK MG MG A 401 O HOH A 640 1555 1555 2.08 LINK MG MG A 402 O2G ATP A 404 1555 1555 2.04 LINK MG MG A 402 O HOH A 623 1555 1555 2.48 LINK MG MG A 402 O HOH A 636 1555 1555 2.20 LINK MG MG A 402 O HOH A 639 1555 1555 2.67 LINK MG MG A 402 O HOH A 667 1555 1555 2.51 CISPEP 1 GLU A 145 LYS A 146 0 21.15 SITE 1 AC1 7 GLY A 23 MG A 402 5MY A 403 ATP A 404 SITE 2 AC1 7 HOH A 636 HOH A 639 HOH A 640 SITE 1 AC2 7 ASP A 231 MG A 401 ATP A 404 HOH A 623 SITE 2 AC2 7 HOH A 636 HOH A 639 HOH A 667 SITE 1 AC3 20 GLY A 23 GLN A 27 LYS A 101 LYS A 115 SITE 2 AC3 20 LYS A 118 ARG A 119 ARG A 152 TYR A 153 SITE 3 AC3 20 GLU A 242 MG A 401 ATP A 404 HOH A 615 SITE 4 AC3 20 HOH A 620 HOH A 636 HOH A 639 HOH A 640 SITE 5 AC3 20 HOH A 645 HOH A 670 HOH A 684 HOH A 690 SITE 1 AC4 24 GLY A 23 SER A 24 PHE A 25 GLN A 27 SITE 2 AC4 24 LEU A 36 LYS A 38 PHE A 77 MET A 85 SITE 3 AC4 24 GLU A 86 ASN A 87 LEU A 88 ASP A 99 SITE 4 AC4 24 ASP A 231 ALA A 233 MG A 401 MG A 402 SITE 5 AC4 24 5MY A 403 HOH A 611 HOH A 619 HOH A 633 SITE 6 AC4 24 HOH A 636 HOH A 638 HOH A 639 HOH A 694 SITE 1 AC5 3 HIS A 73 HOH A 647 HOH A 655 CRYST1 102.999 102.999 110.976 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009011 0.00000