HEADER ISOMERASE 19-DEC-13 4O4V TITLE CRYSTAL STRUCTURE OF TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE TITLE 2 TVAG_497370 (ILE-45 VARIANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_497370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR ROSSETAII; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LARA-GONZALEZ,C.G.BENITEZ-CARDOZA,L.G.BRIEBA REVDAT 2 28-FEB-24 4O4V 1 REMARK LINK REVDAT 1 24-DEC-14 4O4V 0 JRNL AUTH S.LARA-GONZALEZ,C.G.BENITEZ-CARDOZA,L.G.BRIEBA JRNL TITL ENGINEERING MUTANTS WITH ALTERED DIMER-MONOMER EQUILIBRIUM JRNL TITL 2 REVEAL THE EXISTENCE OF STABLE MONOMERIC TRIOSEPHOSPHATE JRNL TITL 3 ISOMERASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1396 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 84422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.0680 - 2.9625 0.93 5804 141 0.1663 0.1662 REMARK 3 2 2.9625 - 2.3522 1.00 6026 146 0.1494 0.1671 REMARK 3 3 2.3522 - 2.0551 1.00 5967 145 0.1319 0.1385 REMARK 3 4 2.0551 - 1.8673 1.00 5943 144 0.1360 0.1484 REMARK 3 5 1.8673 - 1.7335 1.00 5929 144 0.1334 0.1539 REMARK 3 6 1.7335 - 1.6313 1.00 5871 143 0.1267 0.1325 REMARK 3 7 1.6313 - 1.5496 1.00 5909 143 0.1247 0.1370 REMARK 3 8 1.5496 - 1.4822 1.00 5859 142 0.1294 0.1426 REMARK 3 9 1.4822 - 1.4251 1.00 5868 142 0.1358 0.1521 REMARK 3 10 1.4251 - 1.3760 1.00 5871 143 0.1459 0.1655 REMARK 3 11 1.3760 - 1.3329 1.00 5871 142 0.1475 0.1716 REMARK 3 12 1.3329 - 1.2948 1.00 5798 141 0.1506 0.1774 REMARK 3 13 1.2948 - 1.2608 1.00 5877 143 0.1593 0.1692 REMARK 3 14 1.2608 - 1.2300 1.00 5829 141 0.1715 0.1825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1960 REMARK 3 ANGLE : 1.476 2659 REMARK 3 CHIRALITY : 0.090 305 REMARK 3 PLANARITY : 0.009 347 REMARK 3 DIHEDRAL : 11.444 692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:17 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7067 24.3553 -15.2222 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0852 REMARK 3 T33: 0.0812 T12: -0.0040 REMARK 3 T13: 0.0127 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.3034 L22: 0.1424 REMARK 3 L33: 0.5129 L12: -0.0181 REMARK 3 L13: 0.1179 L23: 0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0063 S13: 0.0031 REMARK 3 S21: -0.0418 S22: -0.0412 S23: 0.0080 REMARK 3 S31: -0.0759 S32: -0.0645 S33: -0.2526 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:28 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1111 30.8060 -14.8701 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.1269 REMARK 3 T33: 0.1006 T12: 0.0076 REMARK 3 T13: -0.0151 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 0.1621 REMARK 3 L33: 2.3273 L12: -0.0562 REMARK 3 L13: 0.5835 L23: -0.5418 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.0857 S13: 0.1721 REMARK 3 S21: 0.0389 S22: -0.0396 S23: 0.1283 REMARK 3 S31: -0.2898 S32: -0.1150 S33: -0.0575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 29:35 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3170 17.8901 -25.6511 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1896 REMARK 3 T33: 0.1392 T12: -0.0042 REMARK 3 T13: 0.0062 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.4395 L22: 0.2462 REMARK 3 L33: 0.1593 L12: -0.2878 REMARK 3 L13: 0.1324 L23: -0.1353 REMARK 3 S TENSOR REMARK 3 S11: 0.1340 S12: 0.2415 S13: -0.1056 REMARK 3 S21: -0.2599 S22: -0.1348 S23: 0.0633 REMARK 3 S31: 0.0162 S32: -0.1587 S33: 0.0264 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 36:87 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8133 21.5281 -3.9076 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0862 REMARK 3 T33: 0.0734 T12: -0.0164 REMARK 3 T13: 0.0147 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.0078 L22: 0.3068 REMARK 3 L33: 0.9019 L12: -0.0472 REMARK 3 L13: -0.0367 L23: 0.3579 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0069 S13: -0.0179 REMARK 3 S21: 0.0655 S22: -0.0305 S23: -0.0048 REMARK 3 S31: 0.0869 S32: -0.0917 S33: 0.2413 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 88:119 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8414 18.5692 -4.8061 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0845 REMARK 3 T33: 0.0882 T12: 0.0005 REMARK 3 T13: 0.0083 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4024 L22: 0.7298 REMARK 3 L33: 0.8685 L12: -0.3725 REMARK 3 L13: 0.1124 L23: 0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0305 S13: -0.0025 REMARK 3 S21: 0.1183 S22: 0.0024 S23: -0.1017 REMARK 3 S31: 0.0625 S32: 0.0578 S33: -0.0034 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 120:170 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2370 14.8090 -14.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.0718 REMARK 3 T33: 0.0974 T12: 0.0099 REMARK 3 T13: 0.0171 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.6599 L22: 0.4104 REMARK 3 L33: 0.8294 L12: 0.2038 REMARK 3 L13: -0.1826 L23: 0.2083 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0018 S13: -0.0865 REMARK 3 S21: 0.0773 S22: 0.0041 S23: -0.0995 REMARK 3 S31: 0.1346 S32: 0.0729 S33: 0.0591 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 171:197 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7699 14.9255 -23.6828 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0872 REMARK 3 T33: 0.1114 T12: 0.0045 REMARK 3 T13: 0.0206 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.1144 L22: 0.4288 REMARK 3 L33: 0.6133 L12: 0.1450 REMARK 3 L13: -0.1754 L23: 0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.0565 S13: -0.0036 REMARK 3 S21: -0.0072 S22: 0.1420 S23: -0.1312 REMARK 3 S31: -0.0056 S32: 0.0238 S33: 0.0078 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 198:218 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5133 14.5212 -22.6421 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0777 REMARK 3 T33: 0.0776 T12: -0.0076 REMARK 3 T13: 0.0211 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.5457 L22: 0.2905 REMARK 3 L33: 0.6641 L12: -0.0328 REMARK 3 L13: -0.0420 L23: 0.4393 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.0785 S13: 0.0342 REMARK 3 S21: 0.0049 S22: -0.0141 S23: 0.0050 REMARK 3 S31: 0.0152 S32: 0.0085 S33: -0.0284 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 219:246 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0963 21.1661 -24.8374 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0958 REMARK 3 T33: 0.0841 T12: -0.0018 REMARK 3 T13: 0.0094 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.6196 L22: 0.4383 REMARK 3 L33: 0.8221 L12: -0.2055 REMARK 3 L13: 0.0262 L23: 0.1570 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0920 S13: 0.0622 REMARK 3 S21: -0.0364 S22: -0.0695 S23: -0.0243 REMARK 3 S31: -0.0351 S32: -0.0892 S33: -0.1468 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 247:251 AND NOT (ELEMENT H)) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0685 14.3964 -30.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.1428 REMARK 3 T33: 0.0970 T12: -0.0048 REMARK 3 T13: 0.0180 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.1083 L22: 0.5364 REMARK 3 L33: 0.1786 L12: -0.1993 REMARK 3 L13: -0.0351 L23: -0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.1262 S13: -0.1389 REMARK 3 S21: -0.2790 S22: -0.1159 S23: -0.0275 REMARK 3 S31: 0.0838 S32: -0.0114 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 23.064 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : 0.48900 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 18% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.93000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 56.75000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -144.55 58.34 REMARK 500 ASN A 70 169.65 178.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 136 O REMARK 620 2 HOH A 627 O 104.8 REMARK 620 3 HOH A 632 O 70.0 84.9 REMARK 620 4 HOH A 637 O 82.8 76.7 142.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 222 O REMARK 620 2 CYS A 224 O 95.2 REMARK 620 3 VAL A 227 O 111.8 94.7 REMARK 620 4 SER A 251 OG 81.8 157.4 107.2 REMARK 620 5 HOH A 598 O 150.0 90.8 96.9 81.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4W RELATED DB: PDB REMARK 900 RELATED ID: 4O50 RELATED DB: PDB REMARK 900 RELATED ID: 4O52 RELATED DB: PDB REMARK 900 RELATED ID: 4O53 RELATED DB: PDB REMARK 900 RELATED ID: 4O54 RELATED DB: PDB REMARK 900 RELATED ID: 4O57 RELATED DB: PDB REMARK 900 RELATED ID: 3QSR RELATED DB: PDB DBREF 4O4V A 1 252 UNP A2EGX9 A2EGX9_TRIVA 1 252 SEQRES 1 A 252 MET ARG THR PHE PHE VAL GLY GLY ASN TRP LYS ALA ASN SEQRES 2 A 252 PRO LYS THR VAL GLU GLU ALA GLU LYS LEU ILE GLU MET SEQRES 3 A 252 LEU ASN GLY ALA LYS VAL GLU GLY ASN VAL GLU VAL VAL SEQRES 4 A 252 VAL ALA ALA PRO PHE ILE PHE LEU PRO THR LEU GLN GLN SEQRES 5 A 252 LYS LEU ARG LYS ASP TRP LYS VAL SER ALA GLU ASN VAL SEQRES 6 A 252 PHE THR LYS PRO ASN GLY ALA PHE THR GLY GLU VAL THR SEQRES 7 A 252 VAL PRO MET ILE LYS SER PHE GLY ILE GLU TRP THR ILE SEQRES 8 A 252 LEU GLY HIS SER GLU ARG ARG ASP ILE LEU LYS GLU ASP SEQRES 9 A 252 ASP GLU PHE LEU ALA ALA LYS ALA LYS PHE ALA LEU GLU SEQRES 10 A 252 ASN GLY MET LYS ILE ILE TYR CYS CYS GLY GLU HIS LEU SEQRES 11 A 252 SER GLU ARG GLU ALA GLY LYS ALA SER GLU PHE VAL SER SEQRES 12 A 252 ALA GLN ILE GLU LYS MET ILE PRO ALA ILE PRO ALA GLY SEQRES 13 A 252 LYS TRP ASP ASP VAL VAL ILE ALA TYR GLU PRO ILE TRP SEQRES 14 A 252 ALA ILE GLY THR GLY LYS VAL ALA SER THR GLN ASP ALA SEQRES 15 A 252 GLN GLU MET CYS LYS VAL ILE ARG ASP ILE LEU ALA ALA SEQRES 16 A 252 LYS VAL GLY ALA ASP ILE ALA ASN LYS VAL ARG ILE LEU SEQRES 17 A 252 TYR GLY GLY SER VAL LYS PRO ASN ASN CYS ASN GLU LEU SEQRES 18 A 252 ALA ALA CYS PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY SEQRES 19 A 252 ALA SER LEU GLU PRO GLY PHE ILE ASN ILE VAL ASN SER SEQRES 20 A 252 ASN VAL HIS SER LYS HET NA A 301 1 HET NA A 302 1 HETNAM NA SODIUM ION FORMUL 2 NA 2(NA 1+) FORMUL 4 HOH *281(H2 O) HELIX 1 1 THR A 16 GLY A 29 1 14 HELIX 2 2 PRO A 43 ILE A 45 5 3 HELIX 3 3 PHE A 46 LEU A 54 1 9 HELIX 4 4 THR A 78 SER A 84 1 7 HELIX 5 5 HIS A 94 ILE A 100 1 7 HELIX 6 6 ASP A 104 ASN A 118 1 15 HELIX 7 7 HIS A 129 ALA A 135 1 7 HELIX 8 8 LYS A 137 ILE A 150 1 14 HELIX 9 9 PRO A 151 ILE A 153 5 3 HELIX 10 10 LYS A 157 ASP A 159 5 3 HELIX 11 11 PRO A 167 ILE A 171 5 5 HELIX 12 12 SER A 178 GLY A 198 1 21 HELIX 13 13 GLY A 198 VAL A 205 1 8 HELIX 14 14 ASN A 217 ALA A 223 1 7 HELIX 15 15 GLY A 233 GLU A 238 5 6 HELIX 16 16 PRO A 239 SER A 247 1 9 HELIX 17 17 ASN A 248 SER A 251 5 4 SHEET 1 A 9 PHE A 5 ASN A 9 0 SHEET 2 A 9 GLU A 37 ALA A 41 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 LYS A 59 ALA A 62 1 O SER A 61 N VAL A 40 SHEET 4 A 9 TRP A 89 LEU A 92 1 O TRP A 89 N ALA A 62 SHEET 5 A 9 LYS A 121 CYS A 126 1 O ILE A 123 N LEU A 92 SHEET 6 A 9 VAL A 161 TYR A 165 1 O VAL A 162 N TYR A 124 SHEET 7 A 9 ILE A 207 TYR A 209 1 O LEU A 208 N ILE A 163 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 PHE A 5 ASN A 9 1 N GLY A 7 O VAL A 232 LINK O GLY A 136 NA NA A 302 1555 1555 2.28 LINK O ALA A 222 NA NA A 301 1555 1555 2.34 LINK O CYS A 224 NA NA A 301 1555 1555 2.35 LINK O VAL A 227 NA NA A 301 1555 1555 2.30 LINK OG SER A 251 NA NA A 301 1555 1555 2.39 LINK NA NA A 301 O HOH A 598 1555 1555 2.38 LINK NA NA A 302 O HOH A 627 1555 1555 2.57 LINK NA NA A 302 O HOH A 632 1555 1555 2.45 LINK NA NA A 302 O HOH A 637 1555 1555 2.08 CISPEP 1 ASN A 13 PRO A 14 0 -13.21 SITE 1 AC1 5 ALA A 222 CYS A 224 VAL A 227 SER A 251 SITE 2 AC1 5 HOH A 598 SITE 1 AC2 4 GLY A 136 HOH A 627 HOH A 632 HOH A 637 CRYST1 47.220 56.750 107.860 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009271 0.00000