HEADER METAL TRANSPORT 19-DEC-13 4O4X TITLE CRYSTAL STRUCTURE OF THE VACCINE ANTIGEN TRANSFERRIN BINDING PROTEIN B TITLE 2 (TBPB) DOUBLE MUTANT TYR-167-ALA AND TRP-176-ALA FROM HAEMOPHILUS TITLE 3 PARASUIS HP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBPB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARASUIS; SOURCE 3 ORGANISM_TAXID: 738; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURE-BASED VACCINE DESIGN, TRANSFERRIN RECEPTOR, IRON KEYWDS 2 ACQUISITION, HOST PATHOGEN INTERACTION, SURFACE LIPOPROTEIN, METAL KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.CALMETTES,R.H.YU,A.B.SCHRYVERS,T.F.MORAES REVDAT 2 04-MAR-15 4O4X 1 JRNL REVDAT 1 14-JAN-15 4O4X 0 JRNL AUTH R.FRANDOLOSO,S.MARTINEZ-MARTINEZ,C.CALMETTES,J.FEGAN, JRNL AUTH 2 E.COSTA,D.CURRAN,R.H.YU,C.B.GUTIERREZ-MARTIN, JRNL AUTH 3 E.F.RODRIGUEZ-FERRI,T.F.MORAES,A.B.SCHRYVERS JRNL TITL NONBINDING SITE-DIRECTED MUTANTS OF TRANSFERRIN BINDING JRNL TITL 2 PROTEIN B EXHIBIT ENHANCED IMMUNOGENICITY AND PROTECTIVE JRNL TITL 3 CAPABILITIES. JRNL REF INFECT.IMMUN. V. 83 1030 2015 JRNL REFN ISSN 0019-9567 JRNL PMID 25547790 JRNL DOI 10.1128/IAI.02572-14 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1864 - 6.0271 1.00 2872 151 0.1958 0.2010 REMARK 3 2 6.0271 - 4.7861 1.00 2801 145 0.1863 0.2002 REMARK 3 3 4.7861 - 4.1817 1.00 2744 144 0.1756 0.1925 REMARK 3 4 4.1817 - 3.7996 1.00 2727 143 0.2003 0.2365 REMARK 3 5 3.7996 - 3.5274 1.00 2735 143 0.2152 0.2355 REMARK 3 6 3.5274 - 3.3195 1.00 2739 151 0.2382 0.2688 REMARK 3 7 3.3195 - 3.1534 1.00 2714 137 0.2650 0.2547 REMARK 3 8 3.1534 - 3.0161 1.00 2676 141 0.3040 0.3214 REMARK 3 9 3.0161 - 2.9000 0.94 2589 138 0.3591 0.3984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8003 REMARK 3 ANGLE : 0.840 10773 REMARK 3 CHIRALITY : 0.038 1144 REMARK 3 PLANARITY : 0.003 1397 REMARK 3 DIHEDRAL : 13.391 2918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.182 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 18% PEG 8000, 20% GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 119.94500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 119.94500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 VAL A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 LYS A 17 REMARK 465 THR A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 374 REMARK 465 GLU A 375 REMARK 465 ASP A 482 REMARK 465 PRO A 483 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 LEU A 486 REMARK 465 ARG A 487 REMARK 465 HIS A 488 REMARK 465 ASP A 489 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 PHE B 8 REMARK 465 ASP B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 VAL B 13 REMARK 465 GLN B 14 REMARK 465 PRO B 15 REMARK 465 ASN B 16 REMARK 465 LYS B 17 REMARK 465 THR B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 VAL B 21 REMARK 465 SER B 22 REMARK 465 LYS B 23 REMARK 465 GLU B 24 REMARK 465 GLU B 373 REMARK 465 GLY B 374 REMARK 465 GLU B 375 REMARK 465 LYS B 376 REMARK 465 ASP B 482 REMARK 465 PRO B 483 REMARK 465 GLY B 484 REMARK 465 SER B 485 REMARK 465 LEU B 486 REMARK 465 ARG B 487 REMARK 465 HIS B 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 57 -159.10 -60.41 REMARK 500 TYR A 117 46.90 -102.33 REMARK 500 THR A 133 71.98 50.79 REMARK 500 ALA A 167 78.08 56.83 REMARK 500 LEU A 168 66.47 -109.39 REMARK 500 ASN A 169 9.78 -69.72 REMARK 500 LYS A 179 -73.56 -99.76 REMARK 500 LYS A 215 -99.01 55.31 REMARK 500 SER A 292 -74.18 -83.26 REMARK 500 ALA A 302 96.62 -161.84 REMARK 500 THR A 308 -53.06 -128.22 REMARK 500 ASP A 327 19.72 57.31 REMARK 500 ILE A 346 -169.12 -124.24 REMARK 500 LYS A 349 -71.52 -133.93 REMARK 500 GLU A 414 -113.85 58.36 REMARK 500 ASP A 425 89.35 -69.94 REMARK 500 ALA A 428 41.64 -141.03 REMARK 500 ASP A 519 -12.22 66.42 REMARK 500 ASN A 520 70.16 44.51 REMARK 500 TYR B 117 47.63 -101.83 REMARK 500 THR B 133 72.15 50.60 REMARK 500 ALA B 167 78.14 55.39 REMARK 500 LEU B 168 69.17 -108.89 REMARK 500 ASN B 169 11.23 -67.44 REMARK 500 LYS B 179 -72.52 -100.60 REMARK 500 LYS B 215 -99.58 55.59 REMARK 500 SER B 292 -75.96 -84.41 REMARK 500 ALA B 302 97.35 -162.03 REMARK 500 THR B 308 -56.21 -127.95 REMARK 500 ILE B 346 -154.78 -129.35 REMARK 500 GLU B 414 -112.30 57.84 REMARK 500 ALA B 428 41.28 -142.29 REMARK 500 ASP B 519 -14.60 67.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 348 LYS A 349 -32.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O3W RELATED DB: PDB REMARK 900 RELATED ID: 4O3X RELATED DB: PDB REMARK 900 RELATED ID: 4O3Y RELATED DB: PDB REMARK 900 RELATED ID: 4O3Z RELATED DB: PDB REMARK 900 RELATED ID: 4O49 RELATED DB: PDB REMARK 900 RELATED ID: 4O4U RELATED DB: PDB DBREF 4O4X A 6 537 PDB 4O4X 4O4X 6 537 DBREF 4O4X B 6 537 PDB 4O4X 4O4X 6 537 SEQRES 1 A 532 GLY SER PHE ASP LEU GLU ASP VAL GLN PRO ASN LYS THR SEQRES 2 A 532 THR GLY VAL SER LYS GLU GLU TYR LYS ASP VAL GLU THR SEQRES 3 A 532 ASP LYS LYS VAL LYS GLU GLN LEU GLY GLU LEU MET GLU SEQRES 4 A 532 PRO ALA LEU GLY TYR VAL VAL LYS VAL PRO VAL SER GLN SEQRES 5 A 532 SER GLY VAL LYS ARG THR GLU ILE SER ASN PRO GLU ALA SEQRES 6 A 532 ILE THR ASP GLU ASP LEU ASN LYS ILE PRO ASN TYR GLU SEQRES 7 A 532 ILE ILE LYS GLY VAL ALA TYR PRO ASN TYR GLY GLU LEU SEQRES 8 A 532 VAL ASP LYS THR ALA ALA GLU THR MET LYS TYR VAL ARG SEQRES 9 A 532 SER GLY TYR VAL ILE ASP VAL TYR HIS SER GLY THR ARG SEQRES 10 A 532 ASP LYS GLY TYR VAL PHE TYR LYS GLY ILE THR PRO SER SEQRES 11 A 532 LYS GLU LEU PRO GLN GLY PRO ALA LEU THR TYR GLN GLY SEQRES 12 A 532 GLU TRP ASP PHE THR SER ASP ALA ASN LEU ASN ASN GLU SEQRES 13 A 532 GLU GLY ARG PRO THR ALA LEU ASN ASP ASP TYR TYR THR SEQRES 14 A 532 THR ALA ILE GLY LYS ARG ALA GLY LEU VAL SER GLY ASP SEQRES 15 A 532 ALA LYS PRO SER LYS HIS LYS TYR THR SER GLN PHE LYS SEQRES 16 A 532 VAL ASP PHE ALA THR LYS LYS MET THR GLY LYS LEU SER SEQRES 17 A 532 ASP LYS GLU LYS THR ILE TYR THR VAL ASN ALA ASP ILE SEQRES 18 A 532 ARG GLY ASN ARG PHE THR GLY SER ALA THR ALA SER ASP SEQRES 19 A 532 LYS ASP LYS GLY LYS GLY ALA SER TYR ASN PHE PHE SER SEQRES 20 A 532 VAL ASP SER GLN SER LEU GLU GLY GLY PHE TYR GLY PRO SEQRES 21 A 532 LYS ALA GLU GLU MET ALA GLY LYS PHE VAL ALA ASP ASP SEQRES 22 A 532 LYS SER LEU PHE ALA VAL PHE SER ALA LYS HIS ASN ALA SEQRES 23 A 532 SER ASN VAL ASN THR VAL ARG ILE ILE ASP ALA SER LYS SEQRES 24 A 532 ILE ASP LEU THR ASN PHE SER ILE SER GLU LEU THR ASN SEQRES 25 A 532 PHE GLY ASP ALA SER VAL LEU ILE ILE ASP GLY LYS LYS SEQRES 26 A 532 MET GLU LEU ALA GLY SER GLU PHE THR ASN LYS HIS THR SEQRES 27 A 532 ILE ASP ILE ASN GLY LYS LYS MET VAL ALA VAL ALA CYS SEQRES 28 A 532 CYS SER ASN LEU GLU TYR MET LYS PHE GLY GLN LEU TRP SEQRES 29 A 532 GLN GLN THR GLU GLY GLU LYS GLN VAL LYS ASP ASN SER SEQRES 30 A 532 LEU PHE LEU GLN GLY GLU ARG THR ALA THR ASP LYS MET SEQRES 31 A 532 PRO LYS ASP GLY ASN TYR LYS TYR ILE GLY THR TRP ASP SEQRES 32 A 532 ALA GLN VAL SER LYS GLU ASN ASN TYR TRP VAL ALA THR SEQRES 33 A 532 ALA ASP ASP ASP ARG LYS ALA GLY TYR ARG THR GLU PHE SEQRES 34 A 532 ASP VAL ASP PHE GLY SER LYS ASN LEU SER GLY LYS LEU SEQRES 35 A 532 PHE ASP LYS ASN GLY VAL ASN PRO VAL PHE THR VAL ASN SEQRES 36 A 532 ALA LYS ILE ASP GLY ASN GLY PHE THR GLY GLU ALA LYS SEQRES 37 A 532 THR SER ASP ALA GLY PHE VAL LEU ASP PRO GLY SER LEU SEQRES 38 A 532 ARG HIS ASP ASN VAL LYS PHE SER ASP VAL ALA VAL SER SEQRES 39 A 532 GLY GLY PHE TYR GLY PRO THR ALA ALA GLU LEU GLY GLY SEQRES 40 A 532 GLN PHE ARG TYR GLN SER ASP ASN GLY SER VAL GLY VAL SEQRES 41 A 532 GLY ALA VAL PHE GLY ALA LYS GLN GLN VAL LYS LYS SEQRES 1 B 532 GLY SER PHE ASP LEU GLU ASP VAL GLN PRO ASN LYS THR SEQRES 2 B 532 THR GLY VAL SER LYS GLU GLU TYR LYS ASP VAL GLU THR SEQRES 3 B 532 ASP LYS LYS VAL LYS GLU GLN LEU GLY GLU LEU MET GLU SEQRES 4 B 532 PRO ALA LEU GLY TYR VAL VAL LYS VAL PRO VAL SER GLN SEQRES 5 B 532 SER GLY VAL LYS ARG THR GLU ILE SER ASN PRO GLU ALA SEQRES 6 B 532 ILE THR ASP GLU ASP LEU ASN LYS ILE PRO ASN TYR GLU SEQRES 7 B 532 ILE ILE LYS GLY VAL ALA TYR PRO ASN TYR GLY GLU LEU SEQRES 8 B 532 VAL ASP LYS THR ALA ALA GLU THR MET LYS TYR VAL ARG SEQRES 9 B 532 SER GLY TYR VAL ILE ASP VAL TYR HIS SER GLY THR ARG SEQRES 10 B 532 ASP LYS GLY TYR VAL PHE TYR LYS GLY ILE THR PRO SER SEQRES 11 B 532 LYS GLU LEU PRO GLN GLY PRO ALA LEU THR TYR GLN GLY SEQRES 12 B 532 GLU TRP ASP PHE THR SER ASP ALA ASN LEU ASN ASN GLU SEQRES 13 B 532 GLU GLY ARG PRO THR ALA LEU ASN ASP ASP TYR TYR THR SEQRES 14 B 532 THR ALA ILE GLY LYS ARG ALA GLY LEU VAL SER GLY ASP SEQRES 15 B 532 ALA LYS PRO SER LYS HIS LYS TYR THR SER GLN PHE LYS SEQRES 16 B 532 VAL ASP PHE ALA THR LYS LYS MET THR GLY LYS LEU SER SEQRES 17 B 532 ASP LYS GLU LYS THR ILE TYR THR VAL ASN ALA ASP ILE SEQRES 18 B 532 ARG GLY ASN ARG PHE THR GLY SER ALA THR ALA SER ASP SEQRES 19 B 532 LYS ASP LYS GLY LYS GLY ALA SER TYR ASN PHE PHE SER SEQRES 20 B 532 VAL ASP SER GLN SER LEU GLU GLY GLY PHE TYR GLY PRO SEQRES 21 B 532 LYS ALA GLU GLU MET ALA GLY LYS PHE VAL ALA ASP ASP SEQRES 22 B 532 LYS SER LEU PHE ALA VAL PHE SER ALA LYS HIS ASN ALA SEQRES 23 B 532 SER ASN VAL ASN THR VAL ARG ILE ILE ASP ALA SER LYS SEQRES 24 B 532 ILE ASP LEU THR ASN PHE SER ILE SER GLU LEU THR ASN SEQRES 25 B 532 PHE GLY ASP ALA SER VAL LEU ILE ILE ASP GLY LYS LYS SEQRES 26 B 532 MET GLU LEU ALA GLY SER GLU PHE THR ASN LYS HIS THR SEQRES 27 B 532 ILE ASP ILE ASN GLY LYS LYS MET VAL ALA VAL ALA CYS SEQRES 28 B 532 CYS SER ASN LEU GLU TYR MET LYS PHE GLY GLN LEU TRP SEQRES 29 B 532 GLN GLN THR GLU GLY GLU LYS GLN VAL LYS ASP ASN SER SEQRES 30 B 532 LEU PHE LEU GLN GLY GLU ARG THR ALA THR ASP LYS MET SEQRES 31 B 532 PRO LYS ASP GLY ASN TYR LYS TYR ILE GLY THR TRP ASP SEQRES 32 B 532 ALA GLN VAL SER LYS GLU ASN ASN TYR TRP VAL ALA THR SEQRES 33 B 532 ALA ASP ASP ASP ARG LYS ALA GLY TYR ARG THR GLU PHE SEQRES 34 B 532 ASP VAL ASP PHE GLY SER LYS ASN LEU SER GLY LYS LEU SEQRES 35 B 532 PHE ASP LYS ASN GLY VAL ASN PRO VAL PHE THR VAL ASN SEQRES 36 B 532 ALA LYS ILE ASP GLY ASN GLY PHE THR GLY GLU ALA LYS SEQRES 37 B 532 THR SER ASP ALA GLY PHE VAL LEU ASP PRO GLY SER LEU SEQRES 38 B 532 ARG HIS ASP ASN VAL LYS PHE SER ASP VAL ALA VAL SER SEQRES 39 B 532 GLY GLY PHE TYR GLY PRO THR ALA ALA GLU LEU GLY GLY SEQRES 40 B 532 GLN PHE ARG TYR GLN SER ASP ASN GLY SER VAL GLY VAL SEQRES 41 B 532 GLY ALA VAL PHE GLY ALA LYS GLN GLN VAL LYS LYS HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET SO4 A 606 5 HET SO4 A 607 5 HET GOL A 608 6 HET GOL A 609 6 HET NA A 610 1 HET SO4 A 611 5 HET SO4 A 612 5 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 606 5 HET GOL B 607 6 HET GOL B 608 6 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 8 SO4 10(O4 S 2-) FORMUL 12 NA NA 1+ FORMUL 23 HOH *50(H2 O) HELIX 1 1 ASN A 81 TYR A 90 1 10 HELIX 2 2 VAL A 184 ALA A 188 5 5 HELIX 3 3 LYS A 244 TYR A 248 5 5 HELIX 4 4 GLY B 40 GLU B 44 5 5 HELIX 5 5 ASN B 81 TYR B 90 1 10 HELIX 6 6 PRO B 91 TYR B 93 5 3 HELIX 7 7 VAL B 184 ALA B 188 5 5 HELIX 8 8 LYS B 244 TYR B 248 5 5 HELIX 9 9 ALA B 391 MET B 395 5 5 SHEET 1 A 4 TYR A 26 ASP A 28 0 SHEET 2 A 4 VAL A 523 LYS A 536 -1 O VAL A 535 N LYS A 27 SHEET 3 A 4 ASN A 400 LYS A 413 -1 N THR A 406 O GLY A 530 SHEET 4 A 4 ASN A 416 ALA A 420 -1 O TRP A 418 N VAL A 411 SHEET 1 B10 TYR A 26 ASP A 28 0 SHEET 2 B10 VAL A 523 LYS A 536 -1 O VAL A 535 N LYS A 27 SHEET 3 B10 GLU A 509 GLN A 517 -1 N TYR A 516 O VAL A 525 SHEET 4 B10 VAL A 496 TYR A 503 -1 N TYR A 503 O GLU A 509 SHEET 5 B10 GLY A 467 LYS A 473 -1 N GLY A 470 O VAL A 498 SHEET 6 B10 PHE A 457 ASP A 464 -1 N ASN A 460 O GLU A 471 SHEET 7 B10 ASN A 442 LEU A 447 -1 N LEU A 443 O ALA A 461 SHEET 8 B10 ARG A 431 ASP A 437 -1 N ASP A 437 O ASN A 442 SHEET 9 B10 ASN A 400 LYS A 413 -1 N TYR A 401 O VAL A 436 SHEET 10 B10 ASN A 416 ALA A 420 -1 O TRP A 418 N VAL A 411 SHEET 1 C 5 GLU A 69 ILE A 71 0 SHEET 2 C 5 GLY A 48 LYS A 52 -1 N GLY A 48 O ILE A 71 SHEET 3 C 5 GLY A 125 GLY A 131 -1 O VAL A 127 N VAL A 51 SHEET 4 C 5 VAL A 108 ASP A 115 -1 N ARG A 109 O LYS A 130 SHEET 5 C 5 LEU A 96 LYS A 99 -1 N VAL A 97 O ILE A 114 SHEET 1 D 2 ARG A 62 THR A 63 0 SHEET 2 D 2 ALA A 156 ASN A 157 -1 O ALA A 156 N THR A 63 SHEET 1 E 2 GLU A 137 GLN A 140 0 SHEET 2 E 2 ASN A 295 ARG A 298 -1 O ASN A 295 N GLN A 140 SHEET 1 F 9 LEU A 144 SER A 154 0 SHEET 2 F 9 TYR A 195 ASP A 202 -1 O VAL A 201 N LEU A 144 SHEET 3 F 9 LYS A 207 ASP A 214 -1 O LYS A 207 N ASP A 202 SHEET 4 F 9 LYS A 217 ARG A 227 -1 O VAL A 222 N GLY A 210 SHEET 5 F 9 ARG A 230 ALA A 237 -1 O THR A 232 N ASP A 225 SHEET 6 F 9 SER A 255 TYR A 263 -1 O SER A 255 N ALA A 235 SHEET 7 F 9 GLU A 269 VAL A 275 -1 O ALA A 271 N GLY A 261 SHEET 8 F 9 LEU A 281 HIS A 289 -1 O ALA A 283 N PHE A 274 SHEET 9 F 9 LEU A 144 SER A 154 -1 N THR A 153 O PHE A 282 SHEET 1 G 6 ILE A 312 GLU A 314 0 SHEET 2 G 6 ILE A 300 ASP A 306 -1 N LYS A 304 O SER A 313 SHEET 3 G 6 VAL A 378 GLU A 388 -1 O GLY A 387 N ASP A 301 SHEET 4 G 6 MET A 363 GLN A 371 -1 N GLN A 370 O LYS A 379 SHEET 5 G 6 LYS A 349 CYS A 356 -1 N VAL A 352 O TRP A 369 SHEET 6 G 6 THR A 339 ILE A 346 -1 N ILE A 346 O LYS A 349 SHEET 1 H 2 VAL A 323 ILE A 326 0 SHEET 2 H 2 LYS A 329 GLU A 332 -1 O MET A 331 N LEU A 324 SHEET 1 I 4 TYR B 26 ASP B 28 0 SHEET 2 I 4 VAL B 523 LYS B 536 -1 O VAL B 535 N LYS B 27 SHEET 3 I 4 ASN B 400 LYS B 413 -1 N THR B 406 O GLY B 530 SHEET 4 I 4 ASN B 416 ALA B 420 -1 O TRP B 418 N VAL B 411 SHEET 1 J10 TYR B 26 ASP B 28 0 SHEET 2 J10 VAL B 523 LYS B 536 -1 O VAL B 535 N LYS B 27 SHEET 3 J10 GLU B 509 GLN B 517 -1 N TYR B 516 O VAL B 525 SHEET 4 J10 VAL B 496 TYR B 503 -1 N TYR B 503 O GLU B 509 SHEET 5 J10 GLY B 467 LYS B 473 -1 N GLY B 470 O VAL B 498 SHEET 6 J10 PHE B 457 ASP B 464 -1 N LYS B 462 O THR B 469 SHEET 7 J10 ASN B 442 LEU B 447 -1 N LEU B 443 O ALA B 461 SHEET 8 J10 ARG B 431 ASP B 437 -1 N ASP B 437 O ASN B 442 SHEET 9 J10 ASN B 400 LYS B 413 -1 N TYR B 401 O VAL B 436 SHEET 10 J10 ASN B 416 ALA B 420 -1 O TRP B 418 N VAL B 411 SHEET 1 K 5 GLU B 69 ILE B 71 0 SHEET 2 K 5 GLY B 48 LYS B 52 -1 N GLY B 48 O ILE B 71 SHEET 3 K 5 GLY B 125 GLY B 131 -1 O VAL B 127 N VAL B 51 SHEET 4 K 5 VAL B 108 ASP B 115 -1 N ARG B 109 O LYS B 130 SHEET 5 K 5 LEU B 96 LYS B 99 -1 N VAL B 97 O ILE B 114 SHEET 1 L 2 ARG B 62 THR B 63 0 SHEET 2 L 2 ALA B 156 ASN B 157 -1 O ALA B 156 N THR B 63 SHEET 1 M 2 GLU B 137 PRO B 139 0 SHEET 2 M 2 THR B 296 ARG B 298 -1 O VAL B 297 N LEU B 138 SHEET 1 N 9 LEU B 144 SER B 154 0 SHEET 2 N 9 TYR B 195 ASP B 202 -1 O VAL B 201 N LEU B 144 SHEET 3 N 9 LYS B 207 ASP B 214 -1 O LYS B 207 N ASP B 202 SHEET 4 N 9 LYS B 217 ARG B 227 -1 O TYR B 220 N LEU B 212 SHEET 5 N 9 ARG B 230 ALA B 237 -1 O THR B 232 N ASP B 225 SHEET 6 N 9 SER B 255 TYR B 263 -1 O LEU B 258 N GLY B 233 SHEET 7 N 9 GLU B 269 VAL B 275 -1 O GLU B 269 N TYR B 263 SHEET 8 N 9 LEU B 281 HIS B 289 -1 O ALA B 283 N PHE B 274 SHEET 9 N 9 LEU B 144 SER B 154 -1 N THR B 153 O PHE B 282 SHEET 1 O 6 ILE B 312 GLU B 314 0 SHEET 2 O 6 ILE B 300 ASP B 306 -1 N LYS B 304 O SER B 313 SHEET 3 O 6 LYS B 379 GLU B 388 -1 O GLY B 387 N ASP B 301 SHEET 4 O 6 MET B 363 GLN B 370 -1 N LYS B 364 O GLN B 386 SHEET 5 O 6 LYS B 350 CYS B 356 -1 N CYS B 356 O PHE B 365 SHEET 6 O 6 THR B 339 ASP B 345 -1 N ILE B 344 O MET B 351 SHEET 1 P 2 VAL B 323 ILE B 325 0 SHEET 2 P 2 LYS B 330 GLU B 332 -1 O MET B 331 N LEU B 324 SSBOND 1 CYS A 356 CYS A 357 1555 1555 2.03 SSBOND 2 CYS B 356 CYS B 357 1555 1555 2.03 LINK OD1 ASN A 290 NA NA A 610 1555 1555 2.27 CISPEP 1 SER A 58 GLY A 59 0 -10.60 CISPEP 2 CYS A 356 CYS A 357 0 0.33 CISPEP 3 ASN A 520 GLY A 521 0 1.66 CISPEP 4 ILE B 326 ASP B 327 0 -10.35 CISPEP 5 CYS B 356 CYS B 357 0 0.42 CISPEP 6 ASN B 520 GLY B 521 0 1.20 SITE 1 AC1 2 ASN A 77 ILE A 79 SITE 1 AC2 1 GLY A 228 SITE 1 AC3 6 ARG A 298 ASP A 301 SER A 303 SER A 499 SITE 2 AC3 6 GLN A 513 HOH A 724 SITE 1 AC4 2 VAL A 116 TYR A 173 SITE 1 AC5 2 LEU A 42 GLN A 256 SITE 1 AC6 2 LYS A 192 ASP A 214 SITE 1 AC7 3 THR A 72 ASP A 73 SO4 A 611 SITE 1 AC8 6 SER A 322 ALA A 334 SER A 358 LEU A 360 SITE 2 AC8 6 GLU A 361 LYS A 364 SITE 1 AC9 1 LYS A 211 SITE 1 BC1 2 ASN A 290 ALA A 291 SITE 1 BC2 5 LYS A 78 PRO A 80 ASN A 81 SO4 A 607 SITE 2 BC2 5 HOH A 719 SITE 1 BC3 5 TYR A 112 SER A 185 GLY A 186 ALA A 188 SITE 2 BC3 5 HIS A 193 SITE 1 BC4 2 GLU B 95 TYR B 117 SITE 1 BC5 1 TYR B 93 SITE 1 BC6 4 THR B 100 ALA B 101 ALA B 102 GLU B 103 SITE 1 BC7 4 ARG B 298 SER B 303 ILE B 312 GLU B 314 SITE 1 BC8 3 ASN B 77 ILE B 79 TYR B 82 SITE 1 BC9 3 LYS B 192 HIS B 193 ASP B 214 SITE 1 CC1 3 VAL B 116 TYR B 117 TYR B 173 SITE 1 CC2 3 ARG B 62 THR B 104 LYS B 288 CRYST1 239.890 42.240 114.020 90.00 92.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004169 0.000000 0.000176 0.00000 SCALE2 0.000000 0.023674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008778 0.00000