HEADER ISOMERASE 19-DEC-13 4O54 TITLE CRYSTAL STRUCTURE OF TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE TITLE 2 ILE45-PHE MUTANT (TVAG_497370) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_497370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR ROSSETAII; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LARA-GONZALEZ,C.G.BENITEZ-CARDOZA,L.G.BRIEBA REVDAT 3 28-FEB-24 4O54 1 REMARK SEQADV LINK REVDAT 2 07-MAR-18 4O54 1 REMARK REVDAT 1 24-DEC-14 4O54 0 JRNL AUTH S.LARA-GONZALEZ,C.G.BENITEZ-CARDOZA,L.G.BRIEBA JRNL TITL ENGINEERING MUTANTS WITH ALTERED DIMER-MONOMER EQUILIBRIUM JRNL TITL 2 REVEAL THE EXISTENCE OF STABLE MONOMERIC TRIOSEPHOSPHATE JRNL TITL 3 ISOMERASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1396 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 21287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8436 - 4.2303 0.97 1999 151 0.1589 0.2234 REMARK 3 2 4.2303 - 3.3580 0.97 1881 142 0.1591 0.1873 REMARK 3 3 3.3580 - 2.9336 0.96 1841 138 0.1799 0.2141 REMARK 3 4 2.9336 - 2.6654 0.95 1836 138 0.1783 0.2362 REMARK 3 5 2.6654 - 2.4744 0.95 1802 136 0.1741 0.2366 REMARK 3 6 2.4744 - 2.3285 0.94 1790 135 0.1642 0.1834 REMARK 3 7 2.3285 - 2.2119 0.94 1764 132 0.1530 0.2097 REMARK 3 8 2.2119 - 2.1156 0.93 1768 134 0.1529 0.2317 REMARK 3 9 2.1156 - 2.0342 0.93 1716 129 0.1533 0.2086 REMARK 3 10 2.0342 - 1.9640 0.91 1714 130 0.1690 0.2548 REMARK 3 11 1.9640 - 1.9000 0.89 1685 126 0.1833 0.2247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1972 REMARK 3 ANGLE : 1.400 2666 REMARK 3 CHIRALITY : 0.105 301 REMARK 3 PLANARITY : 0.007 351 REMARK 3 DIHEDRAL : 12.389 696 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8746 -10.4747 21.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1486 REMARK 3 T33: 0.1635 T12: 0.0051 REMARK 3 T13: -0.0014 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.2514 L22: 0.1350 REMARK 3 L33: 0.1549 L12: 0.1005 REMARK 3 L13: 0.0190 L23: -0.0994 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.2666 S13: 0.3848 REMARK 3 S21: 0.1786 S22: -0.2087 S23: 0.4074 REMARK 3 S31: -0.2188 S32: -0.1852 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 8:64) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2262 -24.5149 12.6799 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.2110 REMARK 3 T33: 0.1844 T12: 0.0032 REMARK 3 T13: -0.0364 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.0935 L22: 1.0358 REMARK 3 L33: 1.3000 L12: 0.1476 REMARK 3 L13: -0.2977 L23: -0.3053 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0054 S13: -0.1063 REMARK 3 S21: -0.1489 S22: -0.0236 S23: 0.2076 REMARK 3 S31: 0.1571 S32: -0.2486 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 65:83) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1861 -20.6313 -5.4225 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.1802 REMARK 3 T33: 0.2102 T12: 0.0256 REMARK 3 T13: 0.0075 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.1424 L22: 0.1774 REMARK 3 L33: 0.0641 L12: 0.1591 REMARK 3 L13: 0.0134 L23: 0.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.2030 S12: 0.2308 S13: 0.2133 REMARK 3 S21: -0.2600 S22: 0.2171 S23: -0.1962 REMARK 3 S31: -0.3199 S32: -0.0397 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 84:123) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5023 -17.6135 4.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.2555 T22: 0.2090 REMARK 3 T33: 0.1689 T12: 0.0503 REMARK 3 T13: 0.0026 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.5722 L22: 1.8676 REMARK 3 L33: 1.3579 L12: 0.5759 REMARK 3 L13: 0.3157 L23: -0.2811 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.2850 S13: 0.0860 REMARK 3 S21: -0.3573 S22: -0.1599 S23: -0.3498 REMARK 3 S31: -0.0465 S32: 0.1391 S33: -0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 124:145) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1353 -17.9928 18.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.2290 REMARK 3 T33: 0.3042 T12: -0.0025 REMARK 3 T13: 0.0087 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.6870 L22: 0.0361 REMARK 3 L33: 0.4641 L12: -0.0887 REMARK 3 L13: 0.1942 L23: 0.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.1513 S12: 0.4194 S13: 0.6852 REMARK 3 S21: -0.1421 S22: -0.1985 S23: -0.2205 REMARK 3 S31: 0.0684 S32: 0.2812 S33: -0.0008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 146:182) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2162 -14.7477 16.0283 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1482 REMARK 3 T33: 0.1557 T12: -0.0183 REMARK 3 T13: 0.0054 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.3143 L22: 1.0173 REMARK 3 L33: 0.7918 L12: -0.5134 REMARK 3 L13: 0.6117 L23: 0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: 0.1708 S13: 0.1589 REMARK 3 S21: -0.1061 S22: -0.0721 S23: -0.3762 REMARK 3 S31: -0.0823 S32: 0.0782 S33: -0.0014 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 183:219) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0059 -10.9995 22.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1366 REMARK 3 T33: 0.1470 T12: 0.0017 REMARK 3 T13: -0.0214 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.4962 L22: 0.5545 REMARK 3 L33: 1.4950 L12: 0.4341 REMARK 3 L13: 0.1060 L23: 0.8580 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.0527 S13: -0.0013 REMARK 3 S21: 0.0028 S22: 0.0349 S23: -0.2531 REMARK 3 S31: -0.1166 S32: 0.1561 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 220:252) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6117 -19.0030 25.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1617 REMARK 3 T33: 0.1440 T12: -0.0008 REMARK 3 T13: -0.0088 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.7620 L22: 0.1008 REMARK 3 L33: 1.2482 L12: -0.2100 REMARK 3 L13: -0.0622 L23: -0.2539 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.1123 S13: -0.1097 REMARK 3 S21: 0.0342 S22: -0.1637 S23: 0.0479 REMARK 3 S31: 0.1340 S32: -0.1226 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.829 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 30.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : 0.27000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 18% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.10100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.93850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.10100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.93850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -56.20200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -143.74 55.96 REMARK 500 ASN A 70 -179.05 -177.17 REMARK 500 ASP A 99 -68.29 -91.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 136 O REMARK 620 2 HOH A 520 O 70.3 REMARK 620 3 HOH A 555 O 105.2 84.6 REMARK 620 4 HOH A 575 O 75.8 136.8 79.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 156 O REMARK 620 2 ASP A 159 OD1 76.0 REMARK 620 3 ASP A 159 OD2 126.4 52.7 REMARK 620 4 HOH A 567 O 74.7 145.1 158.7 REMARK 620 5 HOH A 577 O 80.9 93.9 87.5 99.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 222 O REMARK 620 2 CYS A 224 O 89.7 REMARK 620 3 VAL A 227 O 116.7 95.8 REMARK 620 4 SER A 251 OG 82.7 153.8 110.0 REMARK 620 5 HOH A 516 O 145.6 91.7 97.4 81.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4V RELATED DB: PDB REMARK 900 RELATED ID: 4O4W RELATED DB: PDB REMARK 900 RELATED ID: 4O50 RELATED DB: PDB REMARK 900 RELATED ID: 4O52 RELATED DB: PDB REMARK 900 RELATED ID: 4O53 RELATED DB: PDB REMARK 900 RELATED ID: 4O57 RELATED DB: PDB REMARK 900 RELATED ID: 3QSR RELATED DB: PDB DBREF 4O54 A 1 252 UNP A2EGX9 A2EGX9_TRIVA 1 252 SEQADV 4O54 PHE A 45 UNP A2EGX9 ILE 45 ENGINEERED MUTATION SEQRES 1 A 252 MET ARG THR PHE PHE VAL GLY GLY ASN TRP LYS ALA ASN SEQRES 2 A 252 PRO LYS THR VAL GLU GLU ALA GLU LYS LEU ILE GLU MET SEQRES 3 A 252 LEU ASN GLY ALA LYS VAL GLU GLY ASN VAL GLU VAL VAL SEQRES 4 A 252 VAL ALA ALA PRO PHE PHE PHE LEU PRO THR LEU GLN GLN SEQRES 5 A 252 LYS LEU ARG LYS ASP TRP LYS VAL SER ALA GLU ASN VAL SEQRES 6 A 252 PHE THR LYS PRO ASN GLY ALA PHE THR GLY GLU VAL THR SEQRES 7 A 252 VAL PRO MET ILE LYS SER PHE GLY ILE GLU TRP THR ILE SEQRES 8 A 252 LEU GLY HIS SER GLU ARG ARG ASP ILE LEU LYS GLU ASP SEQRES 9 A 252 ASP GLU PHE LEU ALA ALA LYS ALA LYS PHE ALA LEU GLU SEQRES 10 A 252 ASN GLY MET LYS ILE ILE TYR CYS CYS GLY GLU HIS LEU SEQRES 11 A 252 SER GLU ARG GLU ALA GLY LYS ALA SER GLU PHE VAL SER SEQRES 12 A 252 ALA GLN ILE GLU LYS MET ILE PRO ALA ILE PRO ALA GLY SEQRES 13 A 252 LYS TRP ASP ASP VAL VAL ILE ALA TYR GLU PRO ILE TRP SEQRES 14 A 252 ALA ILE GLY THR GLY LYS VAL ALA SER THR GLN ASP ALA SEQRES 15 A 252 GLN GLU MET CYS LYS VAL ILE ARG ASP ILE LEU ALA ALA SEQRES 16 A 252 LYS VAL GLY ALA ASP ILE ALA ASN LYS VAL ARG ILE LEU SEQRES 17 A 252 TYR GLY GLY SER VAL LYS PRO ASN ASN CYS ASN GLU LEU SEQRES 18 A 252 ALA ALA CYS PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY SEQRES 19 A 252 ALA SER LEU GLU PRO GLY PHE ILE ASN ILE VAL ASN SER SEQRES 20 A 252 ASN VAL HIS SER LYS HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HETNAM NA SODIUM ION FORMUL 2 NA 3(NA 1+) FORMUL 5 HOH *189(H2 O) HELIX 1 1 THR A 16 GLY A 29 1 14 HELIX 2 2 PRO A 43 PHE A 45 5 3 HELIX 3 3 PHE A 46 LEU A 54 1 9 HELIX 4 4 THR A 78 PHE A 85 1 8 HELIX 5 5 HIS A 94 ILE A 100 1 7 HELIX 6 6 ASP A 104 ASN A 118 1 15 HELIX 7 7 HIS A 129 GLY A 136 1 8 HELIX 8 8 LYS A 137 ILE A 150 1 14 HELIX 9 9 PRO A 151 ILE A 153 5 3 HELIX 10 10 LYS A 157 ASP A 159 5 3 HELIX 11 11 PRO A 167 ILE A 171 5 5 HELIX 12 12 SER A 178 GLY A 198 1 21 HELIX 13 13 GLY A 198 ASN A 203 1 6 HELIX 14 14 ASN A 217 CYS A 224 1 8 HELIX 15 15 GLY A 233 GLU A 238 5 6 HELIX 16 16 PRO A 239 ASN A 246 1 8 HELIX 17 17 SER A 247 SER A 251 5 5 SHEET 1 A 9 PHE A 5 ASN A 9 0 SHEET 2 A 9 GLU A 37 ALA A 41 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 LYS A 59 ALA A 62 1 O LYS A 59 N VAL A 40 SHEET 4 A 9 TRP A 89 LEU A 92 1 O TRP A 89 N ALA A 62 SHEET 5 A 9 LYS A 121 CYS A 126 1 O ILE A 123 N LEU A 92 SHEET 6 A 9 VAL A 161 TYR A 165 1 O VAL A 162 N TYR A 124 SHEET 7 A 9 ARG A 206 TYR A 209 1 O LEU A 208 N ILE A 163 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 PHE A 5 ASN A 9 1 N GLY A 7 O PHE A 230 LINK O GLY A 136 NA NA A 303 1555 1555 2.38 LINK O GLY A 156 NA NA A 302 1555 1555 2.21 LINK OD1 ASP A 159 NA NA A 302 1555 1555 2.41 LINK OD2 ASP A 159 NA NA A 302 1555 1555 2.50 LINK O ALA A 222 NA NA A 301 1555 1555 2.30 LINK O CYS A 224 NA NA A 301 1555 1555 2.38 LINK O VAL A 227 NA NA A 301 1555 1555 2.26 LINK OG SER A 251 NA NA A 301 1555 1555 2.37 LINK NA NA A 301 O HOH A 516 1555 1555 2.36 LINK NA NA A 302 O HOH A 567 1555 1555 2.32 LINK NA NA A 302 O HOH A 577 1555 1555 2.34 LINK NA NA A 303 O HOH A 520 1555 1555 2.33 LINK NA NA A 303 O HOH A 555 1555 1555 2.43 LINK NA NA A 303 O HOH A 575 1555 1555 2.44 CISPEP 1 ASN A 13 PRO A 14 0 -8.47 SITE 1 AC1 5 ALA A 222 CYS A 224 VAL A 227 SER A 251 SITE 2 AC1 5 HOH A 516 SITE 1 AC2 4 GLY A 156 ASP A 159 HOH A 567 HOH A 577 SITE 1 AC3 4 GLY A 136 HOH A 520 HOH A 555 HOH A 575 CRYST1 46.829 56.202 105.877 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009445 0.00000