HEADER OXIDOREDUCTASE 20-DEC-13 4O61 TITLE STRUCTURE OF HUMAN ALKBH5 CRYSTALLIZED IN THE PRESENCE OF CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEMETHYLASE ALKBH5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 74-294; COMPND 5 SYNONYM: ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 5, ALPHA- COMPND 6 KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 5; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALKBH5, ABH5, OFOXD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS DIOXYGENASE, RNA DEMETHYLASE, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,X.CHAO,K.LIU,A.DONG,T.CEROVINA,H.HE,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 5 20-SEP-23 4O61 1 REMARK SEQADV REVDAT 4 01-JUL-15 4O61 1 JRNL REVDAT 3 04-JUN-14 4O61 1 JRNL REVDAT 2 07-MAY-14 4O61 1 JRNL REVDAT 1 26-FEB-14 4O61 0 JRNL AUTH C.XU,K.LIU,W.TEMPEL,M.DEMETRIADES,W.AIK,C.J.SCHOFIELD,J.MIN JRNL TITL STRUCTURES OF HUMAN ALKBH5 DEMETHYLASE REVEAL A UNIQUE JRNL TITL 2 BINDING MODE FOR SPECIFIC SINGLE-STRANDED N6-METHYLADENOSINE JRNL TITL 3 RNA DEMETHYLATION. JRNL REF J.BIOL.CHEM. V. 289 17299 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24778178 JRNL DOI 10.1074/JBC.M114.550350 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2338 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3475 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3299 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4729 ; 1.457 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7590 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 5.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;32.370 ;23.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;13.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3928 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 789 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 2.111 ; 2.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1701 ; 2.112 ; 2.131 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2127 ; 3.098 ; 3.177 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHASER, PARROT, ARP/WARP, BUCCANEER REMARK 3 WERE ALSO USED DURING PHASING AND REFINEMENT. COOT WAS USED FOR REMARK 3 INTERACTIVE MODEL BUILDING. MOLPROBITY WAS USED FOR GEOMETRY REMARK 3 VALIDATION. REMARK 4 REMARK 4 4O61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000084086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.14, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.98300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3H8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M DIAMMONIUM CITRATE, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.58600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 GLN A 74 REMARK 465 GLN A 75 REMARK 465 GLY A 142 REMARK 465 ALA A 143 REMARK 465 GLN A 144 REMARK 465 LEU A 145 REMARK 465 GLN A 146 REMARK 465 LYS A 147 REMARK 465 ARG A 148 REMARK 465 GLY B 73 REMARK 465 GLN B 74 REMARK 465 GLN B 75 REMARK 465 LEU B 76 REMARK 465 TYR B 141 REMARK 465 GLY B 142 REMARK 465 ALA B 143 REMARK 465 GLN B 144 REMARK 465 LEU B 145 REMARK 465 GLN B 146 REMARK 465 LYS B 147 REMARK 465 ARG B 148 REMARK 465 THR B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 86 NZ REMARK 470 ARG A 93 CD NE CZ NH1 NH2 REMARK 470 GLN A 97 CD OE1 NE2 REMARK 470 LYS A 102 NZ REMARK 470 LYS A 231 CE NZ REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 241 CD OE1 OE2 REMARK 470 LYS A 274 CD CE NZ REMARK 470 THR A 294 CA C O CB OG1 CG2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 80 CD OE1 OE2 REMARK 470 LYS B 84 NZ REMARK 470 LYS B 86 CD CE NZ REMARK 470 ARG B 93 NE CZ NH1 NH2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 ARG B 180 CD NE CZ NH1 NH2 REMARK 470 LYS B 231 CE NZ REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 274 CE NZ REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 137 UNK UNX B 311 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 203 120.59 -27.69 REMARK 500 PHE A 221 -47.10 78.15 REMARK 500 SER B 203 122.44 -33.88 REMARK 500 PRO B 207 107.05 -56.79 REMARK 500 PHE B 221 -43.90 75.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 302 DBREF 4O61 A 74 294 UNP Q6P6C2 ALKB5_HUMAN 74 294 DBREF 4O61 B 74 294 UNP Q6P6C2 ALKB5_HUMAN 74 294 SEQADV 4O61 GLY A 73 UNP Q6P6C2 EXPRESSION TAG SEQADV 4O61 GLY B 73 UNP Q6P6C2 EXPRESSION TAG SEQRES 1 A 222 GLY GLN GLN LEU GLN LYS GLU GLU GLU ALA ARG LYS VAL SEQRES 2 A 222 LYS SER GLY ILE ARG GLN MET ARG LEU PHE SER GLN ASP SEQRES 3 A 222 GLU CYS ALA LYS ILE GLU ALA ARG ILE ASP GLU VAL VAL SEQRES 4 A 222 SER ARG ALA GLU LYS GLY LEU TYR ASN GLU HIS THR VAL SEQRES 5 A 222 ASP ARG ALA PRO LEU ARG ASN LYS TYR PHE PHE GLY GLU SEQRES 6 A 222 GLY TYR THR TYR GLY ALA GLN LEU GLN LYS ARG GLY PRO SEQRES 7 A 222 GLY GLN GLU ARG LEU TYR PRO PRO GLY ASP VAL ASP GLU SEQRES 8 A 222 ILE PRO GLU TRP VAL HIS GLN LEU VAL ILE GLN LYS LEU SEQRES 9 A 222 VAL GLU HIS ARG VAL ILE PRO GLU GLY PHE VAL ASN SER SEQRES 10 A 222 ALA VAL ILE ASN ASP TYR GLN PRO GLY GLY CYS ILE VAL SEQRES 11 A 222 SER HIS VAL ASP PRO ILE HIS ILE PHE GLU ARG PRO ILE SEQRES 12 A 222 VAL SER VAL SER PHE PHE SER ASP SER ALA LEU CYS PHE SEQRES 13 A 222 GLY CYS LYS PHE GLN PHE LYS PRO ILE ARG VAL SER GLU SEQRES 14 A 222 PRO VAL LEU SER LEU PRO VAL ARG ARG GLY SER VAL THR SEQRES 15 A 222 VAL LEU SER GLY TYR ALA ALA ASP GLU ILE THR HIS CYS SEQRES 16 A 222 ILE ARG PRO GLN ASP ILE LYS GLU ARG ARG ALA VAL ILE SEQRES 17 A 222 ILE LEU ARG LYS THR ARG LEU ASP ALA PRO ARG LEU GLU SEQRES 18 A 222 THR SEQRES 1 B 222 GLY GLN GLN LEU GLN LYS GLU GLU GLU ALA ARG LYS VAL SEQRES 2 B 222 LYS SER GLY ILE ARG GLN MET ARG LEU PHE SER GLN ASP SEQRES 3 B 222 GLU CYS ALA LYS ILE GLU ALA ARG ILE ASP GLU VAL VAL SEQRES 4 B 222 SER ARG ALA GLU LYS GLY LEU TYR ASN GLU HIS THR VAL SEQRES 5 B 222 ASP ARG ALA PRO LEU ARG ASN LYS TYR PHE PHE GLY GLU SEQRES 6 B 222 GLY TYR THR TYR GLY ALA GLN LEU GLN LYS ARG GLY PRO SEQRES 7 B 222 GLY GLN GLU ARG LEU TYR PRO PRO GLY ASP VAL ASP GLU SEQRES 8 B 222 ILE PRO GLU TRP VAL HIS GLN LEU VAL ILE GLN LYS LEU SEQRES 9 B 222 VAL GLU HIS ARG VAL ILE PRO GLU GLY PHE VAL ASN SER SEQRES 10 B 222 ALA VAL ILE ASN ASP TYR GLN PRO GLY GLY CYS ILE VAL SEQRES 11 B 222 SER HIS VAL ASP PRO ILE HIS ILE PHE GLU ARG PRO ILE SEQRES 12 B 222 VAL SER VAL SER PHE PHE SER ASP SER ALA LEU CYS PHE SEQRES 13 B 222 GLY CYS LYS PHE GLN PHE LYS PRO ILE ARG VAL SER GLU SEQRES 14 B 222 PRO VAL LEU SER LEU PRO VAL ARG ARG GLY SER VAL THR SEQRES 15 B 222 VAL LEU SER GLY TYR ALA ALA ASP GLU ILE THR HIS CYS SEQRES 16 B 222 ILE ARG PRO GLN ASP ILE LYS GLU ARG ARG ALA VAL ILE SEQRES 17 B 222 ILE LEU ARG LYS THR ARG LEU ASP ALA PRO ARG LEU GLU SEQRES 18 B 222 THR HET GOL A 301 6 HET CIT A 302 13 HET UNL A 303 4 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HET UNX A 309 1 HET UNX A 310 1 HET UNX A 311 1 HET UNX A 312 1 HET UNX A 313 1 HET UNX A 314 1 HET UNX A 315 1 HET UNX A 316 1 HET UNX A 317 1 HET UNX A 318 1 HET GOL B 301 6 HET CIT B 302 13 HET UNL B 303 4 HET UNX B 304 1 HET UNX B 305 1 HET UNX B 306 1 HET UNX B 307 1 HET UNX B 308 1 HET UNX B 309 1 HET UNX B 310 1 HET UNX B 311 1 HET UNX B 312 1 HET UNX B 313 1 HET UNX B 314 1 HET UNX B 315 1 HET UNX B 316 1 HET UNX B 317 1 HET UNX B 318 1 HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETNAM UNL UNKNOWN LIGAND HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 6 UNX 30(X) FORMUL 39 HOH *272(H2 O) HELIX 1 1 LEU A 76 GLY A 88 1 13 HELIX 2 2 SER A 96 LYS A 116 1 21 HELIX 3 3 ASN A 120 HIS A 122 5 3 HELIX 4 4 PRO A 165 VAL A 172 1 8 HELIX 5 5 VAL A 172 HIS A 179 1 8 HELIX 6 6 CYS A 230 PHE A 234 5 5 HELIX 7 7 SER A 257 GLU A 263 1 7 HELIX 8 8 ARG A 269 ILE A 273 5 5 HELIX 9 9 LYS B 78 GLY B 88 1 11 HELIX 10 10 SER B 96 LYS B 116 1 21 HELIX 11 11 ASN B 120 HIS B 122 5 3 HELIX 12 12 PRO B 165 VAL B 172 1 8 HELIX 13 13 VAL B 172 HIS B 179 1 8 HELIX 14 14 CYS B 230 PHE B 234 5 5 HELIX 15 15 SER B 257 GLU B 263 1 7 HELIX 16 16 ARG B 269 ILE B 273 5 5 SHEET 1 A 7 ILE A 89 ARG A 93 0 SHEET 2 A 7 SER A 252 LEU A 256 -1 O VAL A 255 N ARG A 90 SHEET 3 A 7 ILE A 215 PHE A 220 -1 N SER A 217 O THR A 254 SHEET 4 A 7 ARG A 277 ARG A 283 -1 O LEU A 282 N VAL A 216 SHEET 5 A 7 SER A 189 TYR A 195 -1 N TYR A 195 O ARG A 277 SHEET 6 A 7 ARG A 130 PHE A 135 -1 N ASN A 131 O ASP A 194 SHEET 7 A 7 VAL A 124 ALA A 127 -1 N ASP A 125 O LYS A 132 SHEET 1 B 4 ILE A 201 HIS A 204 0 SHEET 2 B 4 HIS A 266 ILE A 268 -1 O HIS A 266 N HIS A 204 SHEET 3 B 4 SER A 224 PHE A 228 -1 N CYS A 227 O CYS A 267 SHEET 4 B 4 LEU A 244 VAL A 248 -1 O LEU A 244 N PHE A 228 SHEET 1 C 7 ILE B 89 ARG B 93 0 SHEET 2 C 7 SER B 252 LEU B 256 -1 O VAL B 255 N ARG B 90 SHEET 3 C 7 ILE B 215 PHE B 220 -1 N SER B 217 O THR B 254 SHEET 4 C 7 ARG B 277 ARG B 283 -1 O ALA B 278 N PHE B 220 SHEET 5 C 7 SER B 189 TYR B 195 -1 N VAL B 191 O ILE B 281 SHEET 6 C 7 ARG B 130 PHE B 135 -1 N ASN B 131 O ASP B 194 SHEET 7 C 7 VAL B 124 ALA B 127 -1 N ASP B 125 O LYS B 132 SHEET 1 D 4 ILE B 201 HIS B 204 0 SHEET 2 D 4 HIS B 266 ILE B 268 -1 O HIS B 266 N HIS B 204 SHEET 3 D 4 SER B 224 PHE B 228 -1 N CYS B 227 O CYS B 267 SHEET 4 D 4 LEU B 244 VAL B 248 -1 O LEU B 244 N PHE B 228 SSBOND 1 CYS A 230 CYS A 267 1555 1555 2.14 SSBOND 2 CYS B 230 CYS B 267 1555 1555 2.07 CISPEP 1 ARG A 213 PRO A 214 0 3.96 CISPEP 2 ARG B 213 PRO B 214 0 7.53 SITE 1 AC1 4 GLU A 263 THR A 265 HOH A 411 HOH A 487 SITE 1 AC2 11 LYS A 132 ASN A 193 ILE A 201 HIS A 204 SITE 2 AC2 11 ASP A 206 ILE A 215 SER A 217 HIS A 266 SITE 3 AC2 11 ILE A 281 ARG A 283 HOH A 416 SITE 1 AC3 8 ALA B 114 GLY B 117 LEU B 118 TYR B 119 SITE 2 AC3 8 VAL B 124 ARG B 126 HOH B 404 HOH B 486 SITE 1 AC4 11 LYS B 132 ASN B 193 ILE B 201 HIS B 204 SITE 2 AC4 11 ASP B 206 ILE B 215 SER B 217 HIS B 266 SITE 3 AC4 11 ILE B 281 ARG B 283 HOH B 406 CRYST1 50.471 57.172 78.644 90.00 102.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019813 0.000000 0.004295 0.00000 SCALE2 0.000000 0.017491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013011 0.00000