data_4O7D # _entry.id 4O7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4O7D RCSB RCSB084134 WWPDB D_1000084134 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4O7D _pdbx_database_status.recvd_initial_deposition_date 2013-12-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thangavelu, K.' 1 'Sivaraman, J.' 2 # _citation.id primary _citation.title 'Structural basis for the active site inhibition mechanism of human kidney-type glutaminase (KGA)' _citation.journal_abbrev 'Sci Rep' _citation.journal_volume 4 _citation.page_first 3827 _citation.page_last 3827 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-2322 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24451979 _citation.pdbx_database_id_DOI 10.1038/srep03827 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Thangavelu, K.' 1 primary 'Chong, Q.Y.' 2 primary 'Low, B.C.' 3 primary 'Sivaraman, J.' 4 # _cell.entry_id 4O7D _cell.length_a 139.278 _cell.length_b 139.278 _cell.length_c 155.502 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O7D _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutaminase kidney isoform, mitochondrial' 34461.355 1 3.5.1.2 ? 'UNP Residues 221-531' ? 2 non-polymer syn 5-OXO-L-NORLEUCINE 145.156 1 ? ? ? ? 3 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLS, K-glutaminase, L-glutamine amidohydrolase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVN DLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATF QSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLS LMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVN DLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATF QSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLS LMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ILE n 1 4 PRO n 1 5 ASP n 1 6 PHE n 1 7 MET n 1 8 SER n 1 9 PHE n 1 10 THR n 1 11 SER n 1 12 HIS n 1 13 ILE n 1 14 ASP n 1 15 GLU n 1 16 LEU n 1 17 TYR n 1 18 GLU n 1 19 SER n 1 20 ALA n 1 21 LYS n 1 22 LYS n 1 23 GLN n 1 24 SER n 1 25 GLY n 1 26 GLY n 1 27 LYS n 1 28 VAL n 1 29 ALA n 1 30 ASP n 1 31 TYR n 1 32 ILE n 1 33 PRO n 1 34 GLN n 1 35 LEU n 1 36 ALA n 1 37 LYS n 1 38 PHE n 1 39 SER n 1 40 PRO n 1 41 ASP n 1 42 LEU n 1 43 TRP n 1 44 GLY n 1 45 VAL n 1 46 SER n 1 47 VAL n 1 48 CYS n 1 49 THR n 1 50 VAL n 1 51 ASP n 1 52 GLY n 1 53 GLN n 1 54 ARG n 1 55 HIS n 1 56 SER n 1 57 THR n 1 58 GLY n 1 59 ASP n 1 60 THR n 1 61 LYS n 1 62 VAL n 1 63 PRO n 1 64 PHE n 1 65 CYS n 1 66 LEU n 1 67 GLN n 1 68 SER n 1 69 CYS n 1 70 VAL n 1 71 LYS n 1 72 PRO n 1 73 LEU n 1 74 LYS n 1 75 TYR n 1 76 ALA n 1 77 ILE n 1 78 ALA n 1 79 VAL n 1 80 ASN n 1 81 ASP n 1 82 LEU n 1 83 GLY n 1 84 THR n 1 85 GLU n 1 86 TYR n 1 87 VAL n 1 88 HIS n 1 89 ARG n 1 90 TYR n 1 91 VAL n 1 92 GLY n 1 93 LYS n 1 94 GLU n 1 95 PRO n 1 96 SER n 1 97 GLY n 1 98 LEU n 1 99 ARG n 1 100 PHE n 1 101 ASN n 1 102 LYS n 1 103 LEU n 1 104 PHE n 1 105 LEU n 1 106 ASN n 1 107 GLU n 1 108 ASP n 1 109 ASP n 1 110 LYS n 1 111 PRO n 1 112 HIS n 1 113 ASN n 1 114 PRO n 1 115 MET n 1 116 VAL n 1 117 ASN n 1 118 ALA n 1 119 GLY n 1 120 ALA n 1 121 ILE n 1 122 VAL n 1 123 VAL n 1 124 THR n 1 125 SER n 1 126 LEU n 1 127 ILE n 1 128 LYS n 1 129 GLN n 1 130 GLY n 1 131 VAL n 1 132 ASN n 1 133 ASN n 1 134 ALA n 1 135 GLU n 1 136 LYS n 1 137 PHE n 1 138 ASP n 1 139 TYR n 1 140 VAL n 1 141 MET n 1 142 GLN n 1 143 PHE n 1 144 LEU n 1 145 ASN n 1 146 LYS n 1 147 MET n 1 148 ALA n 1 149 GLY n 1 150 ASN n 1 151 GLU n 1 152 TYR n 1 153 VAL n 1 154 GLY n 1 155 PHE n 1 156 SER n 1 157 ASN n 1 158 ALA n 1 159 THR n 1 160 PHE n 1 161 GLN n 1 162 SER n 1 163 GLU n 1 164 ARG n 1 165 GLU n 1 166 SER n 1 167 GLY n 1 168 ASP n 1 169 ARG n 1 170 ASN n 1 171 PHE n 1 172 ALA n 1 173 ILE n 1 174 GLY n 1 175 TYR n 1 176 TYR n 1 177 LEU n 1 178 LYS n 1 179 GLU n 1 180 LYS n 1 181 LYS n 1 182 CYS n 1 183 PHE n 1 184 PRO n 1 185 GLU n 1 186 GLY n 1 187 THR n 1 188 ASP n 1 189 MET n 1 190 VAL n 1 191 GLY n 1 192 ILE n 1 193 LEU n 1 194 ASP n 1 195 PHE n 1 196 TYR n 1 197 PHE n 1 198 GLN n 1 199 LEU n 1 200 CYS n 1 201 SER n 1 202 ILE n 1 203 GLU n 1 204 VAL n 1 205 THR n 1 206 CYS n 1 207 GLU n 1 208 SER n 1 209 ALA n 1 210 SER n 1 211 VAL n 1 212 MET n 1 213 ALA n 1 214 ALA n 1 215 THR n 1 216 LEU n 1 217 ALA n 1 218 ASN n 1 219 GLY n 1 220 GLY n 1 221 PHE n 1 222 CYS n 1 223 PRO n 1 224 ILE n 1 225 THR n 1 226 GLY n 1 227 GLU n 1 228 ARG n 1 229 VAL n 1 230 LEU n 1 231 SER n 1 232 PRO n 1 233 GLU n 1 234 ALA n 1 235 VAL n 1 236 ARG n 1 237 ASN n 1 238 THR n 1 239 LEU n 1 240 SER n 1 241 LEU n 1 242 MET n 1 243 HIS n 1 244 SER n 1 245 CYS n 1 246 GLY n 1 247 MET n 1 248 TYR n 1 249 ASP n 1 250 PHE n 1 251 SER n 1 252 GLY n 1 253 GLN n 1 254 PHE n 1 255 ALA n 1 256 PHE n 1 257 HIS n 1 258 VAL n 1 259 GLY n 1 260 LEU n 1 261 PRO n 1 262 ALA n 1 263 LYS n 1 264 SER n 1 265 GLY n 1 266 VAL n 1 267 ALA n 1 268 GLY n 1 269 GLY n 1 270 ILE n 1 271 LEU n 1 272 LEU n 1 273 VAL n 1 274 VAL n 1 275 PRO n 1 276 ASN n 1 277 VAL n 1 278 MET n 1 279 GLY n 1 280 MET n 1 281 MET n 1 282 CYS n 1 283 TRP n 1 284 SER n 1 285 PRO n 1 286 PRO n 1 287 LEU n 1 288 ASP n 1 289 LYS n 1 290 MET n 1 291 GLY n 1 292 ASN n 1 293 SER n 1 294 VAL n 1 295 LYS n 1 296 GLY n 1 297 ILE n 1 298 HIS n 1 299 PHE n 1 300 CYS n 1 301 HIS n 1 302 ASP n 1 303 LEU n 1 304 VAL n 1 305 SER n 1 306 LEU n 1 307 CYS n 1 308 ASN n 1 309 PHE n 1 310 HIS n 1 311 ASN n 1 312 TYR n 1 313 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GLS, GLS1, KIAA0838' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLSK_HUMAN _struct_ref.pdbx_db_accession O94925 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDL GTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQS ERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLM HSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYD ; _struct_ref.pdbx_align_begin 221 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4O7D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 313 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O94925 _struct_ref_seq.db_align_beg 221 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 531 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 221 _struct_ref_seq.pdbx_auth_seq_align_end 531 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4O7D SER A 1 ? UNP O94925 ? ? 'EXPRESSION TAG' 219 1 1 4O7D MET A 2 ? UNP O94925 ? ? 'EXPRESSION TAG' 220 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ONL 'L-peptide linking' . 5-OXO-L-NORLEUCINE ? 'C6 H11 N O3' 145.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4O7D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.470732 _exptl_crystal.density_percent_sol 77.516716 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris propane (pH 7.2), 1.8M Lithium Sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4O7D _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.3 _reflns.number_obs 34102 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4O7D _refine.ls_number_reflns_obs 34035 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.771 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 99.59 _refine.ls_R_factor_obs 0.1937 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1928 _refine.ls_R_factor_R_free 0.2108 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 1722 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 54.5700 _refine.aniso_B[1][1] -9.3778 _refine.aniso_B[2][2] -9.3778 _refine.aniso_B[3][3] 18.7556 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.342 _refine.solvent_model_param_bsol 33.353 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.61 _refine.overall_FOM_work_R_set 0.8508 _refine.B_iso_max 150.740 _refine.B_iso_min 29.590 _refine.pdbx_overall_phase_error 21.8600 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2412 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 2508 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 25.771 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 2481 ? 'X-RAY DIFFRACTION' f_angle_d 1.020 ? ? 3353 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.868 ? ? 897 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.070 ? ? 361 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 438 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.3001 2.3677 12 96.0000 2584 . 0.2909 0.3182 . 140 . 2724 . 'X-RAY DIFFRACTION' . 2.3677 2.4441 12 99.0000 2624 . 0.2623 0.2816 . 142 . 2766 . 'X-RAY DIFFRACTION' . 2.4441 2.5313 12 100.0000 2693 . 0.2522 0.2642 . 125 . 2818 . 'X-RAY DIFFRACTION' . 2.5313 2.6326 12 100.0000 2657 . 0.2211 0.2884 . 144 . 2801 . 'X-RAY DIFFRACTION' . 2.6326 2.7523 12 100.0000 2682 . 0.2231 0.2386 . 142 . 2824 . 'X-RAY DIFFRACTION' . 2.7523 2.8972 12 100.0000 2661 . 0.2085 0.2383 . 151 . 2812 . 'X-RAY DIFFRACTION' . 2.8972 3.0785 12 100.0000 2713 . 0.2047 0.2312 . 124 . 2837 . 'X-RAY DIFFRACTION' . 3.0785 3.3157 12 100.0000 2680 . 0.1971 0.2219 . 149 . 2829 . 'X-RAY DIFFRACTION' . 3.3157 3.6485 12 100.0000 2690 . 0.1919 0.2085 . 153 . 2843 . 'X-RAY DIFFRACTION' . 3.6485 4.1746 12 100.0000 2707 . 0.1638 0.1768 . 154 . 2861 . 'X-RAY DIFFRACTION' . 4.1746 5.2522 12 100.0000 2739 . 0.1546 0.1755 . 159 . 2898 . 'X-RAY DIFFRACTION' . 5.2522 25.7722 12 100.0000 2883 . 0.1961 0.2048 . 139 . 3022 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4O7D _struct.title 'Crystal structure of human glutaminase in complex DON' _struct.pdbx_descriptor 'Glutaminase kidney isoform, mitochondrial (E.C.3.5.1.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O7D _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? LYS A 22 ? ASP A 223 LYS A 240 1 ? 18 HELX_P HELX_P2 2 ILE A 32 ? LYS A 37 ? ILE A 250 LYS A 255 1 ? 6 HELX_P HELX_P3 3 CYS A 69 ? HIS A 88 ? CYS A 287 HIS A 306 1 ? 20 HELX_P HELX_P4 4 VAL A 116 ? ILE A 127 ? VAL A 334 ILE A 345 1 ? 12 HELX_P HELX_P5 5 ASN A 132 ? ALA A 148 ? ASN A 350 ALA A 366 1 ? 17 HELX_P HELX_P6 6 SER A 156 ? GLY A 167 ? SER A 374 GLY A 385 1 ? 12 HELX_P HELX_P7 7 GLY A 167 ? LYS A 180 ? GLY A 385 LYS A 398 1 ? 14 HELX_P HELX_P8 8 ASP A 188 ? SER A 201 ? ASP A 406 SER A 419 1 ? 14 HELX_P HELX_P9 9 THR A 205 ? ASN A 218 ? THR A 423 ASN A 436 1 ? 14 HELX_P HELX_P10 10 SER A 231 ? GLY A 246 ? SER A 449 GLY A 464 1 ? 16 HELX_P HELX_P11 11 MET A 247 ? ASP A 249 ? MET A 465 ASP A 467 5 ? 3 HELX_P HELX_P12 12 PHE A 250 ? VAL A 258 ? PHE A 468 VAL A 476 1 ? 9 HELX_P HELX_P13 13 SER A 293 ? ASN A 308 ? SER A 511 ASN A 526 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id ONL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id CE _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 286 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ONL _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.426 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 27 ? VAL A 28 ? LYS A 245 VAL A 246 A 2 PRO A 286 ? LEU A 287 ? PRO A 504 LEU A 505 B 1 ARG A 54 ? GLY A 58 ? ARG A 272 GLY A 276 B 2 GLY A 44 ? THR A 49 ? GLY A 262 THR A 267 B 3 MET A 278 ? TRP A 283 ? MET A 496 TRP A 501 B 4 GLY A 269 ? VAL A 274 ? GLY A 487 VAL A 492 B 5 ALA A 262 ? SER A 264 ? ALA A 480 SER A 482 C 1 PHE A 64 ? CYS A 65 ? PHE A 282 CYS A 283 C 2 ILE A 202 ? VAL A 204 ? ILE A 420 VAL A 422 C 3 GLY A 154 ? PHE A 155 ? GLY A 372 PHE A 373 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 27 ? N LYS A 245 O LEU A 287 ? O LEU A 505 B 1 2 O HIS A 55 ? O HIS A 273 N VAL A 47 ? N VAL A 265 B 2 3 N CYS A 48 ? N CYS A 266 O GLY A 279 ? O GLY A 497 B 3 4 O MET A 278 ? O MET A 496 N VAL A 274 ? N VAL A 492 B 4 5 O LEU A 271 ? O LEU A 489 N LYS A 263 ? N LYS A 481 C 1 2 N PHE A 64 ? N PHE A 282 O VAL A 204 ? O VAL A 422 C 2 3 O GLU A 203 ? O GLU A 421 N GLY A 154 ? N GLY A 372 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE ONL A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 31 ? TYR A 249 . ? 1_555 ? 2 AC1 10 GLN A 67 ? GLN A 285 . ? 1_555 ? 3 AC1 10 SER A 68 ? SER A 286 . ? 1_555 ? 4 AC1 10 ASN A 117 ? ASN A 335 . ? 1_555 ? 5 AC1 10 GLU A 163 ? GLU A 381 . ? 1_555 ? 6 AC1 10 ASN A 170 ? ASN A 388 . ? 1_555 ? 7 AC1 10 TYR A 196 ? TYR A 414 . ? 1_555 ? 8 AC1 10 TYR A 248 ? TYR A 466 . ? 1_555 ? 9 AC1 10 GLY A 265 ? GLY A 483 . ? 1_555 ? 10 AC1 10 VAL A 266 ? VAL A 484 . ? 1_555 ? # _database_PDB_matrix.entry_id 4O7D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4O7D _atom_sites.fract_transf_matrix[1][1] 0.007180 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007180 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006431 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 219 219 SER SER A . n A 1 2 MET 2 220 220 MET MET A . n A 1 3 ILE 3 221 221 ILE ILE A . n A 1 4 PRO 4 222 222 PRO PRO A . n A 1 5 ASP 5 223 223 ASP ASP A . n A 1 6 PHE 6 224 224 PHE PHE A . n A 1 7 MET 7 225 225 MET MET A . n A 1 8 SER 8 226 226 SER SER A . n A 1 9 PHE 9 227 227 PHE PHE A . n A 1 10 THR 10 228 228 THR THR A . n A 1 11 SER 11 229 229 SER SER A . n A 1 12 HIS 12 230 230 HIS HIS A . n A 1 13 ILE 13 231 231 ILE ILE A . n A 1 14 ASP 14 232 232 ASP ASP A . n A 1 15 GLU 15 233 233 GLU GLU A . n A 1 16 LEU 16 234 234 LEU LEU A . n A 1 17 TYR 17 235 235 TYR TYR A . n A 1 18 GLU 18 236 236 GLU GLU A . n A 1 19 SER 19 237 237 SER SER A . n A 1 20 ALA 20 238 238 ALA ALA A . n A 1 21 LYS 21 239 239 LYS LYS A . n A 1 22 LYS 22 240 240 LYS LYS A . n A 1 23 GLN 23 241 241 GLN GLN A . n A 1 24 SER 24 242 242 SER SER A . n A 1 25 GLY 25 243 243 GLY GLY A . n A 1 26 GLY 26 244 244 GLY GLY A . n A 1 27 LYS 27 245 245 LYS LYS A . n A 1 28 VAL 28 246 246 VAL VAL A . n A 1 29 ALA 29 247 247 ALA ALA A . n A 1 30 ASP 30 248 248 ASP ASP A . n A 1 31 TYR 31 249 249 TYR TYR A . n A 1 32 ILE 32 250 250 ILE ILE A . n A 1 33 PRO 33 251 251 PRO PRO A . n A 1 34 GLN 34 252 252 GLN GLN A . n A 1 35 LEU 35 253 253 LEU LEU A . n A 1 36 ALA 36 254 254 ALA ALA A . n A 1 37 LYS 37 255 255 LYS LYS A . n A 1 38 PHE 38 256 256 PHE PHE A . n A 1 39 SER 39 257 257 SER SER A . n A 1 40 PRO 40 258 258 PRO PRO A . n A 1 41 ASP 41 259 259 ASP ASP A . n A 1 42 LEU 42 260 260 LEU LEU A . n A 1 43 TRP 43 261 261 TRP TRP A . n A 1 44 GLY 44 262 262 GLY GLY A . n A 1 45 VAL 45 263 263 VAL VAL A . n A 1 46 SER 46 264 264 SER SER A . n A 1 47 VAL 47 265 265 VAL VAL A . n A 1 48 CYS 48 266 266 CYS CYS A . n A 1 49 THR 49 267 267 THR THR A . n A 1 50 VAL 50 268 268 VAL VAL A . n A 1 51 ASP 51 269 269 ASP ASP A . n A 1 52 GLY 52 270 270 GLY GLY A . n A 1 53 GLN 53 271 271 GLN GLN A . n A 1 54 ARG 54 272 272 ARG ARG A . n A 1 55 HIS 55 273 273 HIS HIS A . n A 1 56 SER 56 274 274 SER SER A . n A 1 57 THR 57 275 275 THR THR A . n A 1 58 GLY 58 276 276 GLY GLY A . n A 1 59 ASP 59 277 277 ASP ASP A . n A 1 60 THR 60 278 278 THR THR A . n A 1 61 LYS 61 279 279 LYS LYS A . n A 1 62 VAL 62 280 280 VAL VAL A . n A 1 63 PRO 63 281 281 PRO PRO A . n A 1 64 PHE 64 282 282 PHE PHE A . n A 1 65 CYS 65 283 283 CYS CYS A . n A 1 66 LEU 66 284 284 LEU LEU A . n A 1 67 GLN 67 285 285 GLN GLN A . n A 1 68 SER 68 286 286 SER SER A . n A 1 69 CYS 69 287 287 CYS CYS A . n A 1 70 VAL 70 288 288 VAL VAL A . n A 1 71 LYS 71 289 289 LYS LYS A . n A 1 72 PRO 72 290 290 PRO PRO A . n A 1 73 LEU 73 291 291 LEU LEU A . n A 1 74 LYS 74 292 292 LYS LYS A . n A 1 75 TYR 75 293 293 TYR TYR A . n A 1 76 ALA 76 294 294 ALA ALA A . n A 1 77 ILE 77 295 295 ILE ILE A . n A 1 78 ALA 78 296 296 ALA ALA A . n A 1 79 VAL 79 297 297 VAL VAL A . n A 1 80 ASN 80 298 298 ASN ASN A . n A 1 81 ASP 81 299 299 ASP ASP A . n A 1 82 LEU 82 300 300 LEU LEU A . n A 1 83 GLY 83 301 301 GLY GLY A . n A 1 84 THR 84 302 302 THR THR A . n A 1 85 GLU 85 303 303 GLU GLU A . n A 1 86 TYR 86 304 304 TYR TYR A . n A 1 87 VAL 87 305 305 VAL VAL A . n A 1 88 HIS 88 306 306 HIS HIS A . n A 1 89 ARG 89 307 307 ARG ARG A . n A 1 90 TYR 90 308 308 TYR TYR A . n A 1 91 VAL 91 309 309 VAL VAL A . n A 1 92 GLY 92 310 310 GLY GLY A . n A 1 93 LYS 93 311 311 LYS LYS A . n A 1 94 GLU 94 312 312 GLU GLU A . n A 1 95 PRO 95 313 313 PRO PRO A . n A 1 96 SER 96 314 314 SER SER A . n A 1 97 GLY 97 315 315 GLY GLY A . n A 1 98 LEU 98 316 316 LEU LEU A . n A 1 99 ARG 99 317 317 ARG ARG A . n A 1 100 PHE 100 318 318 PHE PHE A . n A 1 101 ASN 101 319 319 ASN ASN A . n A 1 102 LYS 102 320 320 LYS LYS A . n A 1 103 LEU 103 321 321 LEU LEU A . n A 1 104 PHE 104 322 322 PHE PHE A . n A 1 105 LEU 105 323 323 LEU LEU A . n A 1 106 ASN 106 324 324 ASN ASN A . n A 1 107 GLU 107 325 325 GLU GLU A . n A 1 108 ASP 108 326 326 ASP ASP A . n A 1 109 ASP 109 327 327 ASP ASP A . n A 1 110 LYS 110 328 328 LYS LYS A . n A 1 111 PRO 111 329 329 PRO PRO A . n A 1 112 HIS 112 330 330 HIS HIS A . n A 1 113 ASN 113 331 331 ASN ASN A . n A 1 114 PRO 114 332 332 PRO PRO A . n A 1 115 MET 115 333 333 MET MET A . n A 1 116 VAL 116 334 334 VAL VAL A . n A 1 117 ASN 117 335 335 ASN ASN A . n A 1 118 ALA 118 336 336 ALA ALA A . n A 1 119 GLY 119 337 337 GLY GLY A . n A 1 120 ALA 120 338 338 ALA ALA A . n A 1 121 ILE 121 339 339 ILE ILE A . n A 1 122 VAL 122 340 340 VAL VAL A . n A 1 123 VAL 123 341 341 VAL VAL A . n A 1 124 THR 124 342 342 THR THR A . n A 1 125 SER 125 343 343 SER SER A . n A 1 126 LEU 126 344 344 LEU LEU A . n A 1 127 ILE 127 345 345 ILE ILE A . n A 1 128 LYS 128 346 346 LYS LYS A . n A 1 129 GLN 129 347 347 GLN GLN A . n A 1 130 GLY 130 348 348 GLY GLY A . n A 1 131 VAL 131 349 349 VAL VAL A . n A 1 132 ASN 132 350 350 ASN ASN A . n A 1 133 ASN 133 351 351 ASN ASN A . n A 1 134 ALA 134 352 352 ALA ALA A . n A 1 135 GLU 135 353 353 GLU GLU A . n A 1 136 LYS 136 354 354 LYS LYS A . n A 1 137 PHE 137 355 355 PHE PHE A . n A 1 138 ASP 138 356 356 ASP ASP A . n A 1 139 TYR 139 357 357 TYR TYR A . n A 1 140 VAL 140 358 358 VAL VAL A . n A 1 141 MET 141 359 359 MET MET A . n A 1 142 GLN 142 360 360 GLN GLN A . n A 1 143 PHE 143 361 361 PHE PHE A . n A 1 144 LEU 144 362 362 LEU LEU A . n A 1 145 ASN 145 363 363 ASN ASN A . n A 1 146 LYS 146 364 364 LYS LYS A . n A 1 147 MET 147 365 365 MET MET A . n A 1 148 ALA 148 366 366 ALA ALA A . n A 1 149 GLY 149 367 367 GLY GLY A . n A 1 150 ASN 150 368 368 ASN ASN A . n A 1 151 GLU 151 369 369 GLU GLU A . n A 1 152 TYR 152 370 370 TYR TYR A . n A 1 153 VAL 153 371 371 VAL VAL A . n A 1 154 GLY 154 372 372 GLY GLY A . n A 1 155 PHE 155 373 373 PHE PHE A . n A 1 156 SER 156 374 374 SER SER A . n A 1 157 ASN 157 375 375 ASN ASN A . n A 1 158 ALA 158 376 376 ALA ALA A . n A 1 159 THR 159 377 377 THR THR A . n A 1 160 PHE 160 378 378 PHE PHE A . n A 1 161 GLN 161 379 379 GLN GLN A . n A 1 162 SER 162 380 380 SER SER A . n A 1 163 GLU 163 381 381 GLU GLU A . n A 1 164 ARG 164 382 382 ARG ARG A . n A 1 165 GLU 165 383 383 GLU GLU A . n A 1 166 SER 166 384 384 SER SER A . n A 1 167 GLY 167 385 385 GLY GLY A . n A 1 168 ASP 168 386 386 ASP ASP A . n A 1 169 ARG 169 387 387 ARG ARG A . n A 1 170 ASN 170 388 388 ASN ASN A . n A 1 171 PHE 171 389 389 PHE PHE A . n A 1 172 ALA 172 390 390 ALA ALA A . n A 1 173 ILE 173 391 391 ILE ILE A . n A 1 174 GLY 174 392 392 GLY GLY A . n A 1 175 TYR 175 393 393 TYR TYR A . n A 1 176 TYR 176 394 394 TYR TYR A . n A 1 177 LEU 177 395 395 LEU LEU A . n A 1 178 LYS 178 396 396 LYS LYS A . n A 1 179 GLU 179 397 397 GLU GLU A . n A 1 180 LYS 180 398 398 LYS LYS A . n A 1 181 LYS 181 399 399 LYS LYS A . n A 1 182 CYS 182 400 400 CYS CYS A . n A 1 183 PHE 183 401 401 PHE PHE A . n A 1 184 PRO 184 402 402 PRO PRO A . n A 1 185 GLU 185 403 403 GLU GLU A . n A 1 186 GLY 186 404 404 GLY GLY A . n A 1 187 THR 187 405 405 THR THR A . n A 1 188 ASP 188 406 406 ASP ASP A . n A 1 189 MET 189 407 407 MET MET A . n A 1 190 VAL 190 408 408 VAL VAL A . n A 1 191 GLY 191 409 409 GLY GLY A . n A 1 192 ILE 192 410 410 ILE ILE A . n A 1 193 LEU 193 411 411 LEU LEU A . n A 1 194 ASP 194 412 412 ASP ASP A . n A 1 195 PHE 195 413 413 PHE PHE A . n A 1 196 TYR 196 414 414 TYR TYR A . n A 1 197 PHE 197 415 415 PHE PHE A . n A 1 198 GLN 198 416 416 GLN GLN A . n A 1 199 LEU 199 417 417 LEU LEU A . n A 1 200 CYS 200 418 418 CYS CYS A . n A 1 201 SER 201 419 419 SER SER A . n A 1 202 ILE 202 420 420 ILE ILE A . n A 1 203 GLU 203 421 421 GLU GLU A . n A 1 204 VAL 204 422 422 VAL VAL A . n A 1 205 THR 205 423 423 THR THR A . n A 1 206 CYS 206 424 424 CYS CYS A . n A 1 207 GLU 207 425 425 GLU GLU A . n A 1 208 SER 208 426 426 SER SER A . n A 1 209 ALA 209 427 427 ALA ALA A . n A 1 210 SER 210 428 428 SER SER A . n A 1 211 VAL 211 429 429 VAL VAL A . n A 1 212 MET 212 430 430 MET MET A . n A 1 213 ALA 213 431 431 ALA ALA A . n A 1 214 ALA 214 432 432 ALA ALA A . n A 1 215 THR 215 433 433 THR THR A . n A 1 216 LEU 216 434 434 LEU LEU A . n A 1 217 ALA 217 435 435 ALA ALA A . n A 1 218 ASN 218 436 436 ASN ASN A . n A 1 219 GLY 219 437 437 GLY GLY A . n A 1 220 GLY 220 438 438 GLY GLY A . n A 1 221 PHE 221 439 439 PHE PHE A . n A 1 222 CYS 222 440 440 CYS CYS A . n A 1 223 PRO 223 441 441 PRO PRO A . n A 1 224 ILE 224 442 442 ILE ILE A . n A 1 225 THR 225 443 443 THR THR A . n A 1 226 GLY 226 444 444 GLY GLY A . n A 1 227 GLU 227 445 445 GLU GLU A . n A 1 228 ARG 228 446 446 ARG ARG A . n A 1 229 VAL 229 447 447 VAL VAL A . n A 1 230 LEU 230 448 448 LEU LEU A . n A 1 231 SER 231 449 449 SER SER A . n A 1 232 PRO 232 450 450 PRO PRO A . n A 1 233 GLU 233 451 451 GLU GLU A . n A 1 234 ALA 234 452 452 ALA ALA A . n A 1 235 VAL 235 453 453 VAL VAL A . n A 1 236 ARG 236 454 454 ARG ARG A . n A 1 237 ASN 237 455 455 ASN ASN A . n A 1 238 THR 238 456 456 THR THR A . n A 1 239 LEU 239 457 457 LEU LEU A . n A 1 240 SER 240 458 458 SER SER A . n A 1 241 LEU 241 459 459 LEU LEU A . n A 1 242 MET 242 460 460 MET MET A . n A 1 243 HIS 243 461 461 HIS HIS A . n A 1 244 SER 244 462 462 SER SER A . n A 1 245 CYS 245 463 463 CYS CYS A . n A 1 246 GLY 246 464 464 GLY GLY A . n A 1 247 MET 247 465 465 MET MET A . n A 1 248 TYR 248 466 466 TYR TYR A . n A 1 249 ASP 249 467 467 ASP ASP A . n A 1 250 PHE 250 468 468 PHE PHE A . n A 1 251 SER 251 469 469 SER SER A . n A 1 252 GLY 252 470 470 GLY GLY A . n A 1 253 GLN 253 471 471 GLN GLN A . n A 1 254 PHE 254 472 472 PHE PHE A . n A 1 255 ALA 255 473 473 ALA ALA A . n A 1 256 PHE 256 474 474 PHE PHE A . n A 1 257 HIS 257 475 475 HIS HIS A . n A 1 258 VAL 258 476 476 VAL VAL A . n A 1 259 GLY 259 477 477 GLY GLY A . n A 1 260 LEU 260 478 478 LEU LEU A . n A 1 261 PRO 261 479 479 PRO PRO A . n A 1 262 ALA 262 480 480 ALA ALA A . n A 1 263 LYS 263 481 481 LYS LYS A . n A 1 264 SER 264 482 482 SER SER A . n A 1 265 GLY 265 483 483 GLY GLY A . n A 1 266 VAL 266 484 484 VAL VAL A . n A 1 267 ALA 267 485 485 ALA ALA A . n A 1 268 GLY 268 486 486 GLY GLY A . n A 1 269 GLY 269 487 487 GLY GLY A . n A 1 270 ILE 270 488 488 ILE ILE A . n A 1 271 LEU 271 489 489 LEU LEU A . n A 1 272 LEU 272 490 490 LEU LEU A . n A 1 273 VAL 273 491 491 VAL VAL A . n A 1 274 VAL 274 492 492 VAL VAL A . n A 1 275 PRO 275 493 493 PRO PRO A . n A 1 276 ASN 276 494 494 ASN ASN A . n A 1 277 VAL 277 495 495 VAL VAL A . n A 1 278 MET 278 496 496 MET MET A . n A 1 279 GLY 279 497 497 GLY GLY A . n A 1 280 MET 280 498 498 MET MET A . n A 1 281 MET 281 499 499 MET MET A . n A 1 282 CYS 282 500 500 CYS CYS A . n A 1 283 TRP 283 501 501 TRP TRP A . n A 1 284 SER 284 502 502 SER SER A . n A 1 285 PRO 285 503 503 PRO PRO A . n A 1 286 PRO 286 504 504 PRO PRO A . n A 1 287 LEU 287 505 505 LEU LEU A . n A 1 288 ASP 288 506 506 ASP ASP A . n A 1 289 LYS 289 507 507 LYS LYS A . n A 1 290 MET 290 508 508 MET MET A . n A 1 291 GLY 291 509 509 GLY GLY A . n A 1 292 ASN 292 510 510 ASN ASN A . n A 1 293 SER 293 511 511 SER SER A . n A 1 294 VAL 294 512 512 VAL VAL A . n A 1 295 LYS 295 513 513 LYS LYS A . n A 1 296 GLY 296 514 514 GLY GLY A . n A 1 297 ILE 297 515 515 ILE ILE A . n A 1 298 HIS 298 516 516 HIS HIS A . n A 1 299 PHE 299 517 517 PHE PHE A . n A 1 300 CYS 300 518 518 CYS CYS A . n A 1 301 HIS 301 519 519 HIS HIS A . n A 1 302 ASP 302 520 520 ASP ASP A . n A 1 303 LEU 303 521 521 LEU LEU A . n A 1 304 VAL 304 522 522 VAL VAL A . n A 1 305 SER 305 523 523 SER SER A . n A 1 306 LEU 306 524 524 LEU LEU A . n A 1 307 CYS 307 525 525 CYS CYS A . n A 1 308 ASN 308 526 526 ASN ASN A . n A 1 309 PHE 309 527 527 PHE PHE A . n A 1 310 HIS 310 528 528 HIS HIS A . n A 1 311 ASN 311 529 529 ASN ASN A . n A 1 312 TYR 312 530 530 TYR TYR A . n A 1 313 ASP 313 531 531 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6630 ? 1 MORE -38 ? 1 'SSA (A^2)' 43310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_556 -y,-x,-z+1 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 155.5020000000 3 'crystal symmetry operation' 10_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 15_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 155.5020000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 751 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-04-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 274 ? ? O A HOH 774 ? ? 2.01 2 1 CB A SER 286 ? ? CE A ONL 601 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 261 ? ? -167.98 110.62 2 1 GLN A 285 ? ? 53.83 -130.82 3 1 LEU A 316 ? ? -71.20 -148.80 4 1 LEU A 321 ? ? 67.51 75.33 5 1 THR A 443 ? ? -130.74 -30.33 6 1 TYR A 466 ? ? 54.40 -141.01 7 1 VAL A 495 ? ? -125.17 -61.55 8 1 SER A 502 ? ? -161.19 117.85 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 5-OXO-L-NORLEUCINE ONL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ONL 1 601 401 ONL ONL A . C 3 HOH 1 701 1 HOH HOH A . C 3 HOH 2 702 2 HOH HOH A . C 3 HOH 3 703 3 HOH HOH A . C 3 HOH 4 704 4 HOH HOH A . C 3 HOH 5 705 5 HOH HOH A . C 3 HOH 6 706 6 HOH HOH A . C 3 HOH 7 707 7 HOH HOH A . C 3 HOH 8 708 8 HOH HOH A . C 3 HOH 9 709 9 HOH HOH A . C 3 HOH 10 710 10 HOH HOH A . C 3 HOH 11 711 11 HOH HOH A . C 3 HOH 12 712 12 HOH HOH A . C 3 HOH 13 713 13 HOH HOH A . C 3 HOH 14 714 14 HOH HOH A . C 3 HOH 15 715 15 HOH HOH A . C 3 HOH 16 716 16 HOH HOH A . C 3 HOH 17 717 17 HOH HOH A . C 3 HOH 18 718 18 HOH HOH A . C 3 HOH 19 719 19 HOH HOH A . C 3 HOH 20 720 20 HOH HOH A . C 3 HOH 21 721 21 HOH HOH A . C 3 HOH 22 722 22 HOH HOH A . C 3 HOH 23 723 23 HOH HOH A . C 3 HOH 24 724 24 HOH HOH A . C 3 HOH 25 725 25 HOH HOH A . C 3 HOH 26 726 26 HOH HOH A . C 3 HOH 27 727 27 HOH HOH A . C 3 HOH 28 728 28 HOH HOH A . C 3 HOH 29 729 29 HOH HOH A . C 3 HOH 30 730 30 HOH HOH A . C 3 HOH 31 731 31 HOH HOH A . C 3 HOH 32 732 32 HOH HOH A . C 3 HOH 33 733 33 HOH HOH A . C 3 HOH 34 734 34 HOH HOH A . C 3 HOH 35 735 35 HOH HOH A . C 3 HOH 36 736 36 HOH HOH A . C 3 HOH 37 737 37 HOH HOH A . C 3 HOH 38 738 38 HOH HOH A . C 3 HOH 39 739 39 HOH HOH A . C 3 HOH 40 740 40 HOH HOH A . C 3 HOH 41 741 41 HOH HOH A . C 3 HOH 42 742 42 HOH HOH A . C 3 HOH 43 743 43 HOH HOH A . C 3 HOH 44 744 44 HOH HOH A . C 3 HOH 45 745 45 HOH HOH A . C 3 HOH 46 746 46 HOH HOH A . C 3 HOH 47 747 47 HOH HOH A . C 3 HOH 48 748 48 HOH HOH A . C 3 HOH 49 749 49 HOH HOH A . C 3 HOH 50 750 50 HOH HOH A . C 3 HOH 51 751 51 HOH HOH A . C 3 HOH 52 752 52 HOH HOH A . C 3 HOH 53 753 53 HOH HOH A . C 3 HOH 54 754 54 HOH HOH A . C 3 HOH 55 755 55 HOH HOH A . C 3 HOH 56 756 56 HOH HOH A . C 3 HOH 57 757 57 HOH HOH A . C 3 HOH 58 758 58 HOH HOH A . C 3 HOH 59 759 59 HOH HOH A . C 3 HOH 60 760 60 HOH HOH A . C 3 HOH 61 761 61 HOH HOH A . C 3 HOH 62 762 62 HOH HOH A . C 3 HOH 63 763 63 HOH HOH A . C 3 HOH 64 764 64 HOH HOH A . C 3 HOH 65 765 65 HOH HOH A . C 3 HOH 66 766 66 HOH HOH A . C 3 HOH 67 767 67 HOH HOH A . C 3 HOH 68 768 68 HOH HOH A . C 3 HOH 69 769 69 HOH HOH A . C 3 HOH 70 770 70 HOH HOH A . C 3 HOH 71 771 71 HOH HOH A . C 3 HOH 72 772 72 HOH HOH A . C 3 HOH 73 773 73 HOH HOH A . C 3 HOH 74 774 74 HOH HOH A . C 3 HOH 75 775 75 HOH HOH A . C 3 HOH 76 776 76 HOH HOH A . C 3 HOH 77 777 77 HOH HOH A . C 3 HOH 78 778 78 HOH HOH A . C 3 HOH 79 779 79 HOH HOH A . C 3 HOH 80 780 80 HOH HOH A . C 3 HOH 81 781 81 HOH HOH A . C 3 HOH 82 782 82 HOH HOH A . C 3 HOH 83 783 83 HOH HOH A . C 3 HOH 84 784 84 HOH HOH A . C 3 HOH 85 785 85 HOH HOH A . C 3 HOH 86 786 86 HOH HOH A . #