HEADER HYDROLASE 26-DEC-13 4O88 TITLE CRYSTAL STRUCTURE OF A C-TAGGED NUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-TAGGED NUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MILLEROZYMA ACACIAE; SOURCE 3 ORGANISM_TAXID: 28986; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS NOVEL FOLD, NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.CHAKRAVARTY,P.SMITH,S.SHUMAN REVDAT 3 28-FEB-24 4O88 1 REMARK SEQADV REVDAT 2 22-NOV-17 4O88 1 REMARK REVDAT 1 15-OCT-14 4O88 0 JRNL AUTH A.K.CHAKRAVARTY,P.SMITH,R.JALAN,S.SHUMAN JRNL TITL STRUCTURE, MECHANISM, AND SPECIFICITY OF A EUKARYAL TRNA JRNL TITL 2 RESTRICTION ENZYME INVOLVED IN SELF-NONSELF DISCRIMINATION. JRNL REF CELL REP V. 7 339 2014 JRNL REFN ESSN 2211-1247 JRNL PMID 24726365 JRNL DOI 10.1016/J.CELREP.2014.03.034 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.780 REMARK 3 FREE R VALUE TEST SET COUNT : 610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9587 - 4.6025 0.99 4069 158 0.1825 0.2120 REMARK 3 2 4.6025 - 3.6536 0.99 3883 153 0.1573 0.2237 REMARK 3 3 3.6536 - 3.1919 0.99 3878 153 0.2014 0.2726 REMARK 3 4 3.1919 - 2.9001 0.96 3699 146 0.2434 0.3275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5135 REMARK 3 ANGLE : 1.065 6940 REMARK 3 CHIRALITY : 0.046 777 REMARK 3 PLANARITY : 0.003 884 REMARK 3 DIHEDRAL : 16.417 1892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1643 37.3887 72.3180 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.1541 REMARK 3 T33: 0.2903 T12: 0.0479 REMARK 3 T13: -0.0249 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.3856 L22: 0.1365 REMARK 3 L33: 1.0088 L12: 0.5513 REMARK 3 L13: -0.7536 L23: -0.4358 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: 0.1534 S13: 0.0264 REMARK 3 S21: 0.0750 S22: 0.0289 S23: -0.0568 REMARK 3 S31: 0.0274 S32: 0.0164 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4358 41.2283 78.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.1548 REMARK 3 T33: 0.3177 T12: 0.0042 REMARK 3 T13: 0.0054 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.7110 L22: 0.1840 REMARK 3 L33: 1.7812 L12: 0.5700 REMARK 3 L13: -0.5670 L23: -0.0791 REMARK 3 S TENSOR REMARK 3 S11: 0.1160 S12: -0.0688 S13: -0.1270 REMARK 3 S21: 0.1985 S22: 0.0163 S23: -0.0630 REMARK 3 S31: 0.1110 S32: 0.0135 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4537 32.5019 87.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2401 REMARK 3 T33: 0.3526 T12: -0.0116 REMARK 3 T13: -0.0233 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3758 L22: 1.6705 REMARK 3 L33: 1.2687 L12: 1.1360 REMARK 3 L13: -0.9545 L23: -0.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: -0.0430 S13: -0.0179 REMARK 3 S21: -0.0849 S22: -0.0695 S23: 0.0695 REMARK 3 S31: 0.0238 S32: -0.1350 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5905 46.8632 84.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.5184 T22: 0.5943 REMARK 3 T33: 0.6059 T12: 0.0090 REMARK 3 T13: -0.0072 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.2078 L22: 1.7973 REMARK 3 L33: 1.0228 L12: 0.3183 REMARK 3 L13: 0.0186 L23: -0.3039 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.4770 S13: -0.6719 REMARK 3 S21: -0.1099 S22: -0.1136 S23: -0.4582 REMARK 3 S31: 0.3424 S32: 0.6314 S33: -0.0023 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8756 34.9161 124.5705 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2836 REMARK 3 T33: 0.2506 T12: -0.0367 REMARK 3 T13: 0.0025 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.1861 L22: 0.5390 REMARK 3 L33: 0.9693 L12: -0.4279 REMARK 3 L13: -0.9069 L23: 0.2739 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.1273 S13: -0.1455 REMARK 3 S21: -0.0405 S22: -0.0031 S23: 0.0744 REMARK 3 S31: 0.0050 S32: -0.1793 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6841 39.3709 118.5568 REMARK 3 T TENSOR REMARK 3 T11: 0.3660 T22: 0.4468 REMARK 3 T33: 0.2886 T12: -0.0088 REMARK 3 T13: -0.0042 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.2330 L22: 0.5535 REMARK 3 L33: 2.7559 L12: -0.2890 REMARK 3 L13: -1.1167 L23: -0.3772 REMARK 3 S TENSOR REMARK 3 S11: 0.1831 S12: 0.6532 S13: -0.1347 REMARK 3 S21: -0.2043 S22: -0.1155 S23: -0.0104 REMARK 3 S31: 0.1573 S32: -0.0966 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1170 34.6581 109.1691 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.5040 REMARK 3 T33: 0.2959 T12: -0.0352 REMARK 3 T13: 0.0348 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.1112 L22: 2.0543 REMARK 3 L33: 4.2445 L12: -0.7528 REMARK 3 L13: -1.4330 L23: 0.7215 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: 0.1387 S13: 0.0553 REMARK 3 S21: -0.0838 S22: 0.0201 S23: 0.0977 REMARK 3 S31: 0.2416 S32: -0.1964 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2495 44.1405 114.6922 REMARK 3 T TENSOR REMARK 3 T11: 0.5799 T22: 0.9980 REMARK 3 T33: 0.6519 T12: 0.1515 REMARK 3 T13: 0.0840 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 0.8969 L22: 0.7314 REMARK 3 L33: 0.9720 L12: 0.5571 REMARK 3 L13: 0.3380 L23: 0.7667 REMARK 3 S TENSOR REMARK 3 S11: 0.2637 S12: 1.4702 S13: -0.2578 REMARK 3 S21: 0.0429 S22: -0.0445 S23: 0.2637 REMARK 3 S31: -0.1870 S32: -0.8842 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.176 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 9999.00 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REFINEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, 3 - 3.5 M REMARK 280 AMMONIUM SULFATE, 100 MM MAGNESIUM ACETATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.93950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.72750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.93950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.72750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -189.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -61.87900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 319 REMARK 465 LEU A 320 REMARK 465 GLU A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 SER B 308 REMARK 465 ASP B 309 REMARK 465 VAL B 319 REMARK 465 LEU B 320 REMARK 465 GLU B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 60 CG OD1 OD2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 SER A 209 OG REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 135 CD CE NZ REMARK 470 GLU B 193 CD OE1 OE2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 257 CD CE NZ REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 LYS B 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 29 OE2 GLU B 34 2.08 REMARK 500 O4 SO4 A 412 O HOH A 540 2.15 REMARK 500 O ASP B 188 ND2 ASN B 192 2.17 REMARK 500 NE2 GLN A 213 O HOH A 562 2.17 REMARK 500 OG1 THR A 29 OE2 GLU A 34 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -107.45 58.14 REMARK 500 ASN A 307 -153.62 68.51 REMARK 500 ASN B 31 -116.77 63.53 REMARK 500 THR B 77 -106.57 58.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O87 RELATED DB: PDB DBREF 4O88 A 3 319 UNP Q707V3 Q707V3_9ASCO 15 331 DBREF 4O88 B 3 319 UNP Q707V3 Q707V3_9ASCO 15 331 SEQADV 4O88 LEU A 320 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 GLU A 321 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 322 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 323 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 324 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 325 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 326 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS A 327 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 LEU B 320 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 GLU B 321 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 322 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 323 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 324 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 325 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 326 UNP Q707V3 EXPRESSION TAG SEQADV 4O88 HIS B 327 UNP Q707V3 EXPRESSION TAG SEQRES 1 A 325 PRO THR THR CYS LEU ASN GLU GLY ALA ILE GLY TYR MET SEQRES 2 A 325 ALA ILE ASP ILE LEU GLN SER GLN ASN ILE GLU THR ILE SEQRES 3 A 325 THR ILE ASN ASP ASN GLU TYR LYS LEU ASN LYS PHE ASN SEQRES 4 A 325 ASN ILE LYS ASP TYR ILE SER LYS VAL TRP GLY ALA ALA SEQRES 5 A 325 SER VAL TYR ASN LEU ASP LEU GLY ASN ASP TYR THR LYS SEQRES 6 A 325 TRP GLN SER SER LEU ASP ASN VAL GLU THR ASP ASN ILE SEQRES 7 A 325 LYS ASN TYR ILE ASN GLY HIS ASP ASN VAL TYR TYR ASN SEQRES 8 A 325 PRO GLY GLY LYS ASN LYS TYR LEU ILE ILE GLU ALA SER SEQRES 9 A 325 LYS GLU LEU LYS TRP LYS GLY ASN LEU ASN ASN ASN LYS SEQRES 10 A 325 PHE ASN VAL ASN LEU LYS SER ILE PHE SER ASN ALA GLU SEQRES 11 A 325 ASN LEU LYS VAL GLY HIS SER ASP LEU LEU LYS LEU PHE SEQRES 12 A 325 SER SER ILE VAL ASN SER LYS GLY SER ASP ASN GLN LYS SEQRES 13 A 325 LYS VAL LEU ASN SER LEU LEU ASP ASN ILE ASN ASP ARG SEQRES 14 A 325 ARG LEU LYS LYS LEU VAL SER THR GLY GLN TRP THR GLU SEQRES 15 A 325 ALA ILE SER ASP SER VAL ALA ASN GLU ILE ALA LYS ASN SEQRES 16 A 325 ASN LYS LEU THR SER ILE LYS ALA GLN LEU GLY SER GLN SEQRES 17 A 325 LYS THR GLN ASN VAL MET ILE ASP ALA ASN GLY HIS ASP SEQRES 18 A 325 LEU LEU LYS ILE ASP TYR ASP LYS THR PHE VAL THR ALA SEQRES 19 A 325 ASN ASP LEU LYS ASN LYS ILE ILE ASP LYS ASN LYS LEU SEQRES 20 A 325 GLU ASN ALA LYS ASN TYR PHE LYS ILE GLN ASN ASN ASP SEQRES 21 A 325 LYS ILE LEU GLU ASP ILE LYS SER LYS PHE SER LYS ASN SEQRES 22 A 325 ILE ASN GLU ASN ILE LYS GLY SER ILE ARG ASP HIS ALA SEQRES 23 A 325 LYS LEU ILE GLU PHE THR GLU ASN LYS LYS PHE ASN THR SEQRES 24 A 325 ILE ASN ASP ASN SER ASN SER ASP SER LYS ILE LYS SER SEQRES 25 A 325 ILE THR CYS LYS VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 325 PRO THR THR CYS LEU ASN GLU GLY ALA ILE GLY TYR MET SEQRES 2 B 325 ALA ILE ASP ILE LEU GLN SER GLN ASN ILE GLU THR ILE SEQRES 3 B 325 THR ILE ASN ASP ASN GLU TYR LYS LEU ASN LYS PHE ASN SEQRES 4 B 325 ASN ILE LYS ASP TYR ILE SER LYS VAL TRP GLY ALA ALA SEQRES 5 B 325 SER VAL TYR ASN LEU ASP LEU GLY ASN ASP TYR THR LYS SEQRES 6 B 325 TRP GLN SER SER LEU ASP ASN VAL GLU THR ASP ASN ILE SEQRES 7 B 325 LYS ASN TYR ILE ASN GLY HIS ASP ASN VAL TYR TYR ASN SEQRES 8 B 325 PRO GLY GLY LYS ASN LYS TYR LEU ILE ILE GLU ALA SER SEQRES 9 B 325 LYS GLU LEU LYS TRP LYS GLY ASN LEU ASN ASN ASN LYS SEQRES 10 B 325 PHE ASN VAL ASN LEU LYS SER ILE PHE SER ASN ALA GLU SEQRES 11 B 325 ASN LEU LYS VAL GLY HIS SER ASP LEU LEU LYS LEU PHE SEQRES 12 B 325 SER SER ILE VAL ASN SER LYS GLY SER ASP ASN GLN LYS SEQRES 13 B 325 LYS VAL LEU ASN SER LEU LEU ASP ASN ILE ASN ASP ARG SEQRES 14 B 325 ARG LEU LYS LYS LEU VAL SER THR GLY GLN TRP THR GLU SEQRES 15 B 325 ALA ILE SER ASP SER VAL ALA ASN GLU ILE ALA LYS ASN SEQRES 16 B 325 ASN LYS LEU THR SER ILE LYS ALA GLN LEU GLY SER GLN SEQRES 17 B 325 LYS THR GLN ASN VAL MET ILE ASP ALA ASN GLY HIS ASP SEQRES 18 B 325 LEU LEU LYS ILE ASP TYR ASP LYS THR PHE VAL THR ALA SEQRES 19 B 325 ASN ASP LEU LYS ASN LYS ILE ILE ASP LYS ASN LYS LEU SEQRES 20 B 325 GLU ASN ALA LYS ASN TYR PHE LYS ILE GLN ASN ASN ASP SEQRES 21 B 325 LYS ILE LEU GLU ASP ILE LYS SER LYS PHE SER LYS ASN SEQRES 22 B 325 ILE ASN GLU ASN ILE LYS GLY SER ILE ARG ASP HIS ALA SEQRES 23 B 325 LYS LEU ILE GLU PHE THR GLU ASN LYS LYS PHE ASN THR SEQRES 24 B 325 ILE ASN ASP ASN SER ASN SER ASP SER LYS ILE LYS SER SEQRES 25 B 325 ILE THR CYS LYS VAL LEU GLU HIS HIS HIS HIS HIS HIS HET CL A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET SO4 B 402 5 HET SO4 B 403 5 HET CL B 401 1 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 CL 2(CL 1-) FORMUL 4 SO4 19(O4 S 2-) FORMUL 24 HOH *164(H2 O) HELIX 1 1 THR A 5 GLN A 23 1 19 HELIX 2 2 ASN A 42 TRP A 51 1 10 HELIX 3 3 ALA A 53 ASN A 58 1 6 HELIX 4 4 ASP A 64 THR A 66 5 3 HELIX 5 5 LYS A 67 THR A 77 1 11 HELIX 6 6 THR A 77 ASN A 85 1 9 HELIX 7 7 TRP A 111 LEU A 115 5 5 HELIX 8 8 ASN A 116 ASN A 121 5 6 HELIX 9 9 ASN A 123 PHE A 128 5 6 HELIX 10 10 ASN A 130 LEU A 134 5 5 HELIX 11 11 GLY A 137 GLY A 153 1 17 HELIX 12 12 SER A 154 THR A 179 1 26 HELIX 13 13 GLY A 180 ILE A 186 5 7 HELIX 14 14 SER A 187 ASN A 198 1 12 HELIX 15 15 ASP A 228 PHE A 233 1 6 HELIX 16 16 THR A 235 LYS A 242 1 8 HELIX 17 17 ASP A 245 TYR A 255 1 11 HELIX 18 18 ASN A 261 SER A 273 1 13 HELIX 19 19 GLY A 282 LYS A 297 1 16 HELIX 20 20 THR B 5 GLN B 23 1 19 HELIX 21 21 ASN B 42 TRP B 51 1 10 HELIX 22 22 ALA B 53 ASN B 58 1 6 HELIX 23 23 ASP B 64 THR B 66 5 3 HELIX 24 24 LYS B 67 THR B 77 1 11 HELIX 25 25 THR B 77 GLY B 86 1 10 HELIX 26 26 ASN B 116 ASN B 121 5 6 HELIX 27 27 ASN B 123 PHE B 128 5 6 HELIX 28 28 ASN B 130 LEU B 134 5 5 HELIX 29 29 GLY B 137 GLY B 153 1 17 HELIX 30 30 SER B 154 THR B 179 1 26 HELIX 31 31 GLY B 180 ILE B 186 5 7 HELIX 32 32 SER B 187 ASN B 198 1 12 HELIX 33 33 ASP B 228 PHE B 233 1 6 HELIX 34 34 THR B 235 LYS B 242 1 8 HELIX 35 35 ASP B 245 TYR B 255 1 11 HELIX 36 36 ASN B 261 SER B 273 1 13 HELIX 37 37 GLY B 282 LYS B 297 1 16 SHEET 1 A 3 GLU A 34 LYS A 36 0 SHEET 2 A 3 THR A 27 ILE A 30 -1 N ILE A 28 O TYR A 35 SHEET 3 A 3 SER A 314 CYS A 317 1 O CYS A 317 N THR A 29 SHEET 1 B 4 TYR A 100 ILE A 103 0 SHEET 2 B 4 VAL A 90 TYR A 92 -1 N VAL A 90 O ILE A 103 SHEET 3 B 4 THR A 201 LEU A 207 -1 O GLN A 206 N TYR A 91 SHEET 4 B 4 GLN A 213 ILE A 217 -1 O ILE A 217 N THR A 201 SHEET 1 C 4 ASN B 33 LYS B 36 0 SHEET 2 C 4 ILE B 25 ILE B 30 -1 N ILE B 28 O TYR B 35 SHEET 3 C 4 LYS B 313 CYS B 317 1 O CYS B 317 N THR B 29 SHEET 4 C 4 ASN B 303 ASP B 304 -1 N ASN B 303 O THR B 316 SHEET 1 D 4 TYR B 100 ILE B 103 0 SHEET 2 D 4 VAL B 90 TYR B 92 -1 N VAL B 90 O ILE B 103 SHEET 3 D 4 THR B 201 LEU B 207 -1 O GLN B 206 N TYR B 91 SHEET 4 D 4 THR B 212 ILE B 217 -1 O ILE B 217 N THR B 201 CISPEP 1 GLY B 96 LYS B 97 0 -4.17 SITE 1 AC1 2 THR A 4 TYR A 83 SITE 1 AC2 6 VAL A 122 ASN A 123 LEU A 124 LYS A 125 SITE 2 AC2 6 HIS A 138 LEU A 141 SITE 1 AC3 2 SER A 154 ASN A 156 SITE 1 AC4 3 SER A 106 LYS A 107 LYS A 311 SITE 1 AC5 5 HIS A 87 PHE A 256 LYS A 257 ILE A 258 SITE 2 AC5 5 LYS A 311 SITE 1 AC6 2 ASN A 261 ASP A 262 SITE 1 AC7 4 ASN A 89 TYR A 91 GLY A 208 SER A 209 SITE 1 AC8 2 ARG A 171 HOH A 581 SITE 1 AC9 5 SER A 71 ASN A 74 HOH A 515 HOH A 589 SITE 2 AC9 5 LYS B 39 SITE 1 BC1 8 GLY A 96 LYS A 97 ASN A 98 GLY B 96 SITE 2 BC1 8 LYS B 97 ASN B 98 TYR B 100 ASP B 230 SITE 1 BC2 2 LYS A 112 GLY A 113 SITE 1 BC3 1 HOH A 540 SITE 1 BC4 3 LYS A 81 ASN A 85 LYS A 174 SITE 1 BC5 1 THR B 4 SITE 1 BC6 6 VAL B 122 ASN B 123 LEU B 124 LYS B 125 SITE 2 BC6 6 HIS B 138 LEU B 141 SITE 1 BC7 3 ASN B 89 TYR B 91 GLY B 208 SITE 1 BC8 1 ARG B 171 SITE 1 BC9 2 SER B 151 LYS B 152 SITE 1 CC1 2 SER B 151 ILE B 302 SITE 1 CC2 3 SER B 154 ASN B 156 GLN B 157 SITE 1 CC3 3 SER B 106 LYS B 107 HOH B 540 CRYST1 61.879 77.455 147.920 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006760 0.00000