HEADER HYDROLASE 07-JAN-14 4OBF TITLE CRYSTAL STRUCTURE OF NELFINAVIR-RESISTANT, INACTIVE HIV-1 PROTEASE TITLE 2 VARIANT (D30N/N88D) IN COMPLEX WITH THE P1-P6 SUBSTRATE VARIANT TITLE 3 (S451N) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 PROTEASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PR, RETROPEPSIN; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P1-P6 PEPTIDE; COMPND 10 CHAIN: E, F; COMPND 11 FRAGMENT: UNP RESIDUES 446-455; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11685; SOURCE 5 STRAIN: GROUP M SUBTYPE B (ISOLATE ARV2/SF2); SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TAP106; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PXC35; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 15 ORGANISM_COMMON: HIV-1; SOURCE 16 ORGANISM_TAXID: 11676 KEYWDS CO-EVOLUTION, RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KOLLI REVDAT 3 20-SEP-23 4OBF 1 REMARK SEQADV REVDAT 2 22-NOV-17 4OBF 1 REMARK REVDAT 1 26-NOV-14 4OBF 0 JRNL AUTH M.KOLLI,A.OZEN,N.KURT-YILMAZ,C.A.SCHIFFER JRNL TITL HIV-1 PROTEASE-SUBSTRATE COEVOLUTION IN NELFINAVIR JRNL TITL 2 RESISTANCE. JRNL REF J.VIROL. V. 88 7145 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24719428 JRNL DOI 10.1128/JVI.00266-14 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.41000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3233 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2191 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4386 ; 1.460 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5391 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 7.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;41.275 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;13.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3519 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 563 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2058 ; 1.367 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 861 ; 0.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3326 ; 2.227 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 3.251 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1055 ; 5.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 RESIDUE RANGE : A 94 A 99 REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 RESIDUE RANGE : B 94 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2351 3.8920 -12.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1341 REMARK 3 T33: 0.1301 T12: -0.0182 REMARK 3 T13: 0.0067 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 4.0457 L22: 2.8466 REMARK 3 L33: 3.5840 L12: 2.4555 REMARK 3 L13: 3.3162 L23: -0.0872 REMARK 3 S TENSOR REMARK 3 S11: -0.2897 S12: 0.3586 S13: 0.3760 REMARK 3 S21: -0.2390 S22: 0.0397 S23: 0.0439 REMARK 3 S31: -0.2133 S32: 0.2214 S33: 0.2500 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6529 6.6162 0.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.0926 REMARK 3 T33: 0.1915 T12: -0.0052 REMARK 3 T13: -0.0071 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 6.4426 L22: 1.9836 REMARK 3 L33: 2.2264 L12: 3.0856 REMARK 3 L13: -2.2569 L23: -1.9576 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.2614 S13: 0.4901 REMARK 3 S21: 0.0659 S22: -0.0873 S23: 0.0691 REMARK 3 S31: -0.1840 S32: -0.0230 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8765 -9.2644 -12.1686 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1692 REMARK 3 T33: 0.1205 T12: -0.0238 REMARK 3 T13: 0.0370 T23: -0.1066 REMARK 3 L TENSOR REMARK 3 L11: 9.9766 L22: 14.3183 REMARK 3 L33: 2.6056 L12: -9.8416 REMARK 3 L13: 1.9513 L23: -3.4474 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: 0.4961 S13: -0.7865 REMARK 3 S21: -0.4852 S22: -0.1271 S23: -0.2945 REMARK 3 S31: 0.0329 S32: -0.0802 S33: 0.0410 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8449 -5.5466 -3.3238 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.0953 REMARK 3 T33: 0.0488 T12: -0.0114 REMARK 3 T13: -0.0138 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 4.8733 L22: 1.5994 REMARK 3 L33: 0.9110 L12: 0.3623 REMARK 3 L13: -1.2458 L23: 0.6845 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.2042 S13: 0.0439 REMARK 3 S21: -0.0498 S22: 0.0820 S23: -0.0556 REMARK 3 S31: 0.0894 S32: -0.0368 S33: -0.0389 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -25.4001 -11.3689 2.6569 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1700 REMARK 3 T33: 0.1062 T12: -0.0179 REMARK 3 T13: 0.0006 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 5.9091 L22: 3.4222 REMARK 3 L33: -0.3096 L12: -0.0735 REMARK 3 L13: -0.3387 L23: -0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.1926 S13: -0.2519 REMARK 3 S21: 0.1528 S22: -0.0243 S23: 0.3326 REMARK 3 S31: -0.0362 S32: -0.0920 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6007 -2.7434 -1.5105 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.0757 REMARK 3 T33: 0.0698 T12: -0.0124 REMARK 3 T13: 0.0035 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.0993 L22: 1.6934 REMARK 3 L33: 1.1348 L12: -0.1125 REMARK 3 L13: 0.3036 L23: -0.2766 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.1005 S13: 0.2335 REMARK 3 S21: -0.0160 S22: -0.0171 S23: -0.0566 REMARK 3 S31: -0.0866 S32: 0.0740 S33: 0.0361 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5415 -7.9326 5.6220 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1058 REMARK 3 T33: 0.1262 T12: 0.0081 REMARK 3 T13: 0.0060 T23: 0.0657 REMARK 3 L TENSOR REMARK 3 L11: 7.3220 L22: 1.0788 REMARK 3 L33: 6.1002 L12: -0.8110 REMARK 3 L13: -0.2406 L23: 0.8757 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.0265 S13: -0.1342 REMARK 3 S21: -0.1303 S22: -0.0304 S23: -0.1413 REMARK 3 S31: 0.0054 S32: 0.5101 S33: 0.1040 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 49 REMARK 3 RESIDUE RANGE : A 52 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4811 -17.4024 3.1559 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.0818 REMARK 3 T33: 0.1758 T12: 0.0019 REMARK 3 T13: -0.0095 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 12.3645 L22: 3.3211 REMARK 3 L33: 1.3445 L12: 4.2112 REMARK 3 L13: -0.1244 L23: 0.8441 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: 0.2709 S13: -0.4838 REMARK 3 S21: 0.0562 S22: 0.0499 S23: 0.2128 REMARK 3 S31: -0.0840 S32: 0.0588 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 49 REMARK 3 RESIDUE RANGE : B 52 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6288 -7.0678 12.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.2264 REMARK 3 T33: 0.0929 T12: -0.0066 REMARK 3 T13: -0.0135 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 5.9810 L22: 2.6791 REMARK 3 L33: 1.2609 L12: 4.3367 REMARK 3 L13: 0.7646 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.4531 S13: 0.0169 REMARK 3 S21: 0.0169 S22: -0.0286 S23: -0.0142 REMARK 3 S31: 0.0050 S32: -0.0316 S33: 0.0372 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2103 -13.0552 -2.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.0630 REMARK 3 T33: 0.1316 T12: -0.0314 REMARK 3 T13: -0.0078 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 10.1837 L22: 12.4218 REMARK 3 L33: 14.0424 L12: -6.0454 REMARK 3 L13: 7.7766 L23: -11.8520 REMARK 3 S TENSOR REMARK 3 S11: 0.1661 S12: 0.3565 S13: -0.4589 REMARK 3 S21: -0.2600 S22: 0.0836 S23: 0.0737 REMARK 3 S31: 0.3567 S32: -0.1217 S33: -0.2497 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6696 1.1242 -6.6121 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1167 REMARK 3 T33: 0.1004 T12: 0.0034 REMARK 3 T13: 0.0101 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 10.5376 L22: 8.2445 REMARK 3 L33: 8.7607 L12: 6.9972 REMARK 3 L13: -2.9057 L23: -1.2922 REMARK 3 S TENSOR REMARK 3 S11: 0.1061 S12: -0.1159 S13: 0.6029 REMARK 3 S21: -0.0465 S22: -0.0334 S23: 0.4971 REMARK 3 S31: -0.3461 S32: 0.0286 S33: -0.0726 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9043 -4.1740 -8.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.1933 REMARK 3 T33: 0.0443 T12: -0.0323 REMARK 3 T13: 0.0257 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.2358 L22: 1.6920 REMARK 3 L33: -0.2444 L12: 1.2458 REMARK 3 L13: 0.2801 L23: -0.5535 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: 0.4291 S13: -0.0869 REMARK 3 S21: -0.1892 S22: 0.1502 S23: -0.0579 REMARK 3 S31: 0.0613 S32: -0.0295 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8155 -1.6000 6.7974 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1212 REMARK 3 T33: 0.1161 T12: -0.0387 REMARK 3 T13: -0.0345 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.5231 L22: 9.4444 REMARK 3 L33: 20.0604 L12: 2.9338 REMARK 3 L13: -5.1541 L23: -13.8542 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.2463 S13: 0.1216 REMARK 3 S21: 0.3357 S22: -0.3477 S23: -0.2513 REMARK 3 S31: -0.2396 S32: 0.5351 S33: 0.2332 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4026 -0.3356 -8.2273 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.0544 REMARK 3 T33: 0.1107 T12: -0.0064 REMARK 3 T13: 0.0097 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 17.6971 L22: 5.3456 REMARK 3 L33: 7.0788 L12: -0.7176 REMARK 3 L13: -2.0703 L23: 0.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: 0.7687 S13: -0.0508 REMARK 3 S21: -0.4032 S22: -0.0220 S23: 0.0266 REMARK 3 S31: -0.2691 S32: -0.1392 S33: -0.0818 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7636 1.9441 -2.1871 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.0749 REMARK 3 T33: 0.1971 T12: 0.0365 REMARK 3 T13: -0.0251 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 5.6381 L22: 3.7671 REMARK 3 L33: 6.6471 L12: 4.3195 REMARK 3 L13: -3.6910 L23: -1.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.1565 S13: 0.3892 REMARK 3 S21: -0.1267 S22: 0.0027 S23: 0.1188 REMARK 3 S31: -0.3175 S32: -0.2174 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6325 -6.3798 4.4812 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1024 REMARK 3 T33: 0.1070 T12: 0.0084 REMARK 3 T13: -0.0045 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 6.5953 L22: -0.0836 REMARK 3 L33: 2.7641 L12: 0.3076 REMARK 3 L13: -1.2489 L23: 1.7594 REMARK 3 S TENSOR REMARK 3 S11: 0.1922 S12: -0.1691 S13: -0.1498 REMARK 3 S21: 0.1085 S22: 0.0928 S23: -0.0995 REMARK 3 S31: -0.0810 S32: 0.1396 S33: -0.2851 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2677 -10.0481 1.0127 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1076 REMARK 3 T33: 0.1202 T12: -0.0067 REMARK 3 T13: 0.0206 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.1194 L22: 2.7965 REMARK 3 L33: 0.7288 L12: -1.1384 REMARK 3 L13: 0.5927 L23: 0.7120 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.1098 S13: -0.1309 REMARK 3 S21: -0.0419 S22: -0.1470 S23: -0.0537 REMARK 3 S31: 0.0926 S32: 0.0964 S33: 0.0857 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7553 -4.8177 -10.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1694 REMARK 3 T33: 0.0571 T12: -0.0030 REMARK 3 T13: -0.0080 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 7.9584 L22: 0.6037 REMARK 3 L33: 2.2245 L12: -0.8203 REMARK 3 L13: 2.9402 L23: -1.2340 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: 0.2555 S13: -0.0009 REMARK 3 S21: -0.0415 S22: 0.0213 S23: -0.0585 REMARK 3 S31: 0.0294 S32: -0.0180 S33: 0.0870 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2299 4.3591 -3.0735 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.0444 REMARK 3 T33: 0.1492 T12: -0.0121 REMARK 3 T13: 0.0075 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 10.3699 L22: 6.4891 REMARK 3 L33: 1.0458 L12: 0.6261 REMARK 3 L13: -1.2053 L23: -1.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0119 S13: 0.3179 REMARK 3 S21: 0.0279 S22: -0.0682 S23: -0.2700 REMARK 3 S31: 0.0802 S32: 0.1011 S33: 0.0930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : GE(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 21.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.71300 REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1T3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% AMMONIUM SULPHATE, 63MM SODIUM REMARK 280 CITRATE, 126MM SODIUM PHOSPHATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.03700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG F 1 REMARK 465 PRO F 2 REMARK 465 PRO F 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 ARG C 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 41 CG CD CE NZ REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 TRP D 6 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 6 CZ3 CH2 REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 LYS D 41 CG CD CE NZ REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 LYS D 55 CG CD CE NZ REMARK 470 LYS D 70 CG CD CE NZ REMARK 470 ARG E 1 CG CD NE CZ NH1 NH2 REMARK 470 ASN F 8 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 87 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 130.62 -39.93 REMARK 500 PRO A 79 46.73 -78.95 REMARK 500 CYS B 67 59.89 31.46 REMARK 500 PRO B 79 46.85 -78.64 REMARK 500 PHE E 5 40.01 -105.24 REMARK 500 PHE F 5 45.03 -98.33 REMARK 500 LEU F 6 134.64 -39.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OBD RELATED DB: PDB REMARK 900 RELATED ID: 4OBG RELATED DB: PDB REMARK 900 RELATED ID: 4OBH RELATED DB: PDB REMARK 900 RELATED ID: 4OBJ RELATED DB: PDB REMARK 900 RELATED ID: 4OBK RELATED DB: PDB DBREF 4OBF A 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 4OBF B 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 4OBF C 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 4OBF D 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 4OBF E 1 10 UNP P03349 GAG_HV1A2 446 455 DBREF 4OBF F 1 10 UNP P03349 GAG_HV1A2 446 455 SEQADV 4OBF LYS A 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 4OBF ASN A 25 UNP P03369 ASP 515 ENGINEERED MUTATION SEQADV 4OBF ASN A 30 UNP P03369 ASP 520 ENGINEERED MUTATION SEQADV 4OBF ILE A 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 4OBF ASP A 88 UNP P03369 ASN 578 ENGINEERED MUTATION SEQADV 4OBF LYS B 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 4OBF ASN B 25 UNP P03369 ASP 515 ENGINEERED MUTATION SEQADV 4OBF ASN B 30 UNP P03369 ASP 520 ENGINEERED MUTATION SEQADV 4OBF ILE B 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 4OBF ASP B 88 UNP P03369 ASN 578 ENGINEERED MUTATION SEQADV 4OBF LYS C 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 4OBF ASN C 25 UNP P03369 ASP 515 ENGINEERED MUTATION SEQADV 4OBF ASN C 30 UNP P03369 ASP 520 ENGINEERED MUTATION SEQADV 4OBF ILE C 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 4OBF ASP C 88 UNP P03369 ASN 578 ENGINEERED MUTATION SEQADV 4OBF LYS D 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 4OBF ASN D 25 UNP P03369 ASP 515 ENGINEERED MUTATION SEQADV 4OBF ASN D 30 UNP P03369 ASP 520 ENGINEERED MUTATION SEQADV 4OBF ILE D 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 4OBF ASP D 88 UNP P03369 ASN 578 ENGINEERED MUTATION SEQADV 4OBF ASN E 8 UNP P03349 SER 453 ENGINEERED MUTATION SEQADV 4OBF ASN F 8 UNP P03349 SER 453 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASN THR SEQRES 3 A 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 A 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASP LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 B 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASN THR SEQRES 3 B 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 B 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASP LEU LEU THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 C 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 C 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASN THR SEQRES 3 C 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 C 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 C 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 C 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 C 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASP LEU LEU THR SEQRES 8 C 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 D 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 D 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASN THR SEQRES 3 D 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 D 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 D 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 D 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 D 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASP LEU LEU THR SEQRES 8 D 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 E 10 ARG PRO GLY ASN PHE LEU GLN ASN ARG PRO SEQRES 1 F 10 ARG PRO GLY ASN PHE LEU GLN ASN ARG PRO HET GOL A 101 6 HET EDO A 102 4 HET EDO A 103 4 HET EDO A 104 4 HET PO4 A 105 5 HET ACT A 106 4 HET GOL B 101 6 HET EDO B 102 4 HET GOL C 101 6 HET EDO C 102 4 HET EDO C 103 4 HET EDO C 104 4 HET GOL D 101 6 HET EDO D 102 4 HET PO4 D 103 5 HET EDO E 101 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 GOL 4(C3 H8 O3) FORMUL 8 EDO 9(C2 H6 O2) FORMUL 11 PO4 2(O4 P 3-) FORMUL 12 ACT C2 H3 O2 1- FORMUL 23 HOH *188(H2 O) HELIX 1 1 GLY A 86 ILE A 93 1 8 HELIX 2 2 GLY B 86 ILE B 93 1 8 HELIX 3 3 GLY C 86 ILE C 93 1 8 HELIX 4 4 GLY D 86 ILE D 93 1 8 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 98 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 TRP A 42 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 B 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 LEU A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N ARG A 14 SHEET 1 C 9 GLN E 7 ASN E 8 0 SHEET 2 C 9 LYS B 43 GLY B 49 -1 N GLY B 48 O ASN E 8 SHEET 3 C 9 GLY B 52 ILE B 66 -1 O GLY B 52 N GLY B 49 SHEET 4 C 9 HIS B 69 VAL B 77 -1 O VAL B 75 N TYR B 59 SHEET 5 C 9 VAL B 32 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 6 C 9 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 7 C 9 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 8 C 9 LEU B 10 ILE B 15 -1 N ILE B 13 O LYS B 20 SHEET 9 C 9 GLY B 52 ILE B 66 -1 O GLU B 65 N ARG B 14 SHEET 1 D 4 GLN C 2 ILE C 3 0 SHEET 2 D 4 THR D 96 ASN D 98 -1 O LEU D 97 N ILE C 3 SHEET 3 D 4 THR C 96 ASN C 98 -1 N THR C 96 O ASN D 98 SHEET 4 D 4 GLN D 2 ILE D 3 -1 O ILE D 3 N LEU C 97 SHEET 1 E 8 LYS C 43 GLY C 49 0 SHEET 2 E 8 GLY C 52 ILE C 66 -1 O VAL C 56 N LYS C 45 SHEET 3 E 8 HIS C 69 VAL C 77 -1 O HIS C 69 N ILE C 66 SHEET 4 E 8 VAL C 32 LEU C 33 1 N LEU C 33 O LEU C 76 SHEET 5 E 8 ILE C 84 ILE C 85 -1 O ILE C 84 N VAL C 32 SHEET 6 E 8 GLN C 18 LEU C 24 1 N LEU C 23 O ILE C 85 SHEET 7 E 8 LEU C 10 ILE C 15 -1 N ILE C 13 O LYS C 20 SHEET 8 E 8 GLY C 52 ILE C 66 -1 O GLU C 65 N ARG C 14 SHEET 1 F 8 TRP D 42 GLY D 48 0 SHEET 2 F 8 PHE D 53 ILE D 66 -1 O VAL D 56 N LYS D 45 SHEET 3 F 8 HIS D 69 VAL D 77 -1 O VAL D 75 N TYR D 59 SHEET 4 F 8 VAL D 32 LEU D 33 1 N LEU D 33 O LEU D 76 SHEET 5 F 8 ILE D 84 ILE D 85 -1 O ILE D 84 N VAL D 32 SHEET 6 F 8 GLN D 18 LEU D 24 1 N LEU D 23 O ILE D 85 SHEET 7 F 8 LEU D 10 ILE D 15 -1 N VAL D 11 O ALA D 22 SHEET 8 F 8 PHE D 53 ILE D 66 -1 O GLU D 65 N ARG D 14 SITE 1 AC1 5 LYS A 7 ARG A 8 HOH A 232 ARG B 87 SITE 2 AC1 5 ARG E 9 SITE 1 AC2 5 ARG A 14 ILE A 15 GLY A 16 GLY A 17 SITE 2 AC2 5 HOH A 241 SITE 1 AC3 1 LYS A 70 SITE 1 AC4 6 LEU A 5 TRP A 6 HOH A 214 HOH A 236 SITE 2 AC4 6 ARG B 87 HOH B 226 SITE 1 AC5 6 GLU A 35 MET A 36 ASN A 37 HOH A 226 SITE 2 AC5 6 PRO B 39 GLY B 40 SITE 1 AC6 2 PRO A 1 HOH A 223 SITE 1 AC7 3 ARG A 87 LYS B 7 ARG B 8 SITE 1 AC8 3 ARG B 14 GLY B 16 GLY B 17 SITE 1 AC9 5 ARG C 87 HOH C 222 TRP D 6 LYS D 7 SITE 2 AC9 5 ARG D 8 SITE 1 BC1 4 GLY B 52 PHE B 53 ILE C 72 GLN C 92 SITE 1 BC2 4 LYS C 7 ARG C 8 ARG D 87 ARG F 9 SITE 1 BC3 6 ASP C 29 ASN C 30 VAL C 32 ILE C 47 SITE 2 BC3 6 GLY F 3 ASN F 4 SITE 1 BC4 8 GLY C 16 PRO C 63 ARG D 14 GLY D 16 SITE 2 BC4 8 GLY D 17 PRO D 63 HOH D 218 HOH D 243 SITE 1 BC5 5 PRO C 39 GLY C 40 MET D 36 ASN D 37 SITE 2 BC5 5 HOH D 234 SITE 1 BC6 7 TRP B 42 LYS B 55 ARG B 57 HOH B 246 SITE 2 BC6 7 VAL D 11 THR D 12 CYS D 67 SITE 1 BC7 3 ARG A 8 ASN E 8 ARG E 9 CRYST1 51.547 60.074 60.232 90.00 99.25 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019400 0.000000 0.003159 0.00000 SCALE2 0.000000 0.016646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016821 0.00000