data_4OBM # _entry.id 4OBM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4OBM RCSB RCSB084287 WWPDB D_1000084287 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-420658 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4OBM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (EUBSIR_01389) from Eubacterium siraeum DSM 15702 at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.entry_id 4OBM _cell.length_a 49.503 _cell.length_b 51.466 _cell.length_c 104.712 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OBM _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 29091.797 1 ? ? ? ? 2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 3 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 4 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GKDATVNVSQNQTAIFTPDSTYDFSVL(MSE)TLSADNDKTPDKY(MSE)TITYIAKNNTFVL(MSE)PYLPNAVIDGGN TIKQICEQSGEAEVAKLLSSKTGLSINKYIRFTKSTLTELFD(MSE)VGNTTLTVPSEIKYENKKDNTVTIIKKGTQIFT AEQ(MSE)YAYLTLPDYGVKDELYPCKLNATVISSFIDQNFIGTSSKTLDEYINFIINFTNTNIEQSDYDAKVKAIVYTL SQNKSSVTDFYIPYGDKSGDDYIIDDNSWNSAKKALGTG ; _entity_poly.pdbx_seq_one_letter_code_can ;GKDATVNVSQNQTAIFTPDSTYDFSVLMTLSADNDKTPDKYMTITYIAKNNTFVLMPYLPNAVIDGGNTIKQICEQSGEA EVAKLLSSKTGLSINKYIRFTKSTLTELFDMVGNTTLTVPSEIKYENKKDNTVTIIKKGTQIFTAEQMYAYLTLPDYGVK DELYPCKLNATVISSFIDQNFIGTSSKTLDEYINFIINFTNTNIEQSDYDAKVKAIVYTLSQNKSSVTDFYIPYGDKSGD DYIIDDNSWNSAKKALGTG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-420658 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 ASP n 1 4 ALA n 1 5 THR n 1 6 VAL n 1 7 ASN n 1 8 VAL n 1 9 SER n 1 10 GLN n 1 11 ASN n 1 12 GLN n 1 13 THR n 1 14 ALA n 1 15 ILE n 1 16 PHE n 1 17 THR n 1 18 PRO n 1 19 ASP n 1 20 SER n 1 21 THR n 1 22 TYR n 1 23 ASP n 1 24 PHE n 1 25 SER n 1 26 VAL n 1 27 LEU n 1 28 MSE n 1 29 THR n 1 30 LEU n 1 31 SER n 1 32 ALA n 1 33 ASP n 1 34 ASN n 1 35 ASP n 1 36 LYS n 1 37 THR n 1 38 PRO n 1 39 ASP n 1 40 LYS n 1 41 TYR n 1 42 MSE n 1 43 THR n 1 44 ILE n 1 45 THR n 1 46 TYR n 1 47 ILE n 1 48 ALA n 1 49 LYS n 1 50 ASN n 1 51 ASN n 1 52 THR n 1 53 PHE n 1 54 VAL n 1 55 LEU n 1 56 MSE n 1 57 PRO n 1 58 TYR n 1 59 LEU n 1 60 PRO n 1 61 ASN n 1 62 ALA n 1 63 VAL n 1 64 ILE n 1 65 ASP n 1 66 GLY n 1 67 GLY n 1 68 ASN n 1 69 THR n 1 70 ILE n 1 71 LYS n 1 72 GLN n 1 73 ILE n 1 74 CYS n 1 75 GLU n 1 76 GLN n 1 77 SER n 1 78 GLY n 1 79 GLU n 1 80 ALA n 1 81 GLU n 1 82 VAL n 1 83 ALA n 1 84 LYS n 1 85 LEU n 1 86 LEU n 1 87 SER n 1 88 SER n 1 89 LYS n 1 90 THR n 1 91 GLY n 1 92 LEU n 1 93 SER n 1 94 ILE n 1 95 ASN n 1 96 LYS n 1 97 TYR n 1 98 ILE n 1 99 ARG n 1 100 PHE n 1 101 THR n 1 102 LYS n 1 103 SER n 1 104 THR n 1 105 LEU n 1 106 THR n 1 107 GLU n 1 108 LEU n 1 109 PHE n 1 110 ASP n 1 111 MSE n 1 112 VAL n 1 113 GLY n 1 114 ASN n 1 115 THR n 1 116 THR n 1 117 LEU n 1 118 THR n 1 119 VAL n 1 120 PRO n 1 121 SER n 1 122 GLU n 1 123 ILE n 1 124 LYS n 1 125 TYR n 1 126 GLU n 1 127 ASN n 1 128 LYS n 1 129 LYS n 1 130 ASP n 1 131 ASN n 1 132 THR n 1 133 VAL n 1 134 THR n 1 135 ILE n 1 136 ILE n 1 137 LYS n 1 138 LYS n 1 139 GLY n 1 140 THR n 1 141 GLN n 1 142 ILE n 1 143 PHE n 1 144 THR n 1 145 ALA n 1 146 GLU n 1 147 GLN n 1 148 MSE n 1 149 TYR n 1 150 ALA n 1 151 TYR n 1 152 LEU n 1 153 THR n 1 154 LEU n 1 155 PRO n 1 156 ASP n 1 157 TYR n 1 158 GLY n 1 159 VAL n 1 160 LYS n 1 161 ASP n 1 162 GLU n 1 163 LEU n 1 164 TYR n 1 165 PRO n 1 166 CYS n 1 167 LYS n 1 168 LEU n 1 169 ASN n 1 170 ALA n 1 171 THR n 1 172 VAL n 1 173 ILE n 1 174 SER n 1 175 SER n 1 176 PHE n 1 177 ILE n 1 178 ASP n 1 179 GLN n 1 180 ASN n 1 181 PHE n 1 182 ILE n 1 183 GLY n 1 184 THR n 1 185 SER n 1 186 SER n 1 187 LYS n 1 188 THR n 1 189 LEU n 1 190 ASP n 1 191 GLU n 1 192 TYR n 1 193 ILE n 1 194 ASN n 1 195 PHE n 1 196 ILE n 1 197 ILE n 1 198 ASN n 1 199 PHE n 1 200 THR n 1 201 ASN n 1 202 THR n 1 203 ASN n 1 204 ILE n 1 205 GLU n 1 206 GLN n 1 207 SER n 1 208 ASP n 1 209 TYR n 1 210 ASP n 1 211 ALA n 1 212 LYS n 1 213 VAL n 1 214 LYS n 1 215 ALA n 1 216 ILE n 1 217 VAL n 1 218 TYR n 1 219 THR n 1 220 LEU n 1 221 SER n 1 222 GLN n 1 223 ASN n 1 224 LYS n 1 225 SER n 1 226 SER n 1 227 VAL n 1 228 THR n 1 229 ASP n 1 230 PHE n 1 231 TYR n 1 232 ILE n 1 233 PRO n 1 234 TYR n 1 235 GLY n 1 236 ASP n 1 237 LYS n 1 238 SER n 1 239 GLY n 1 240 ASP n 1 241 ASP n 1 242 TYR n 1 243 ILE n 1 244 ILE n 1 245 ASP n 1 246 ASP n 1 247 ASN n 1 248 SER n 1 249 TRP n 1 250 ASN n 1 251 SER n 1 252 ALA n 1 253 LYS n 1 254 LYS n 1 255 ALA n 1 256 LEU n 1 257 GLY n 1 258 THR n 1 259 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EUBSIR_01389, ZP_02422542.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 15702' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Eubacterium siraeum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 428128 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B0MNI4_9FIRM _struct_ref.pdbx_db_accession B0MNI4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KDATVNVSQNQTAIFTPDSTYDFSVLMTLSADNDKTPDKYMTITYIAKNNTFVLMPYLPNAVIDGGNTIKQICEQSGEAE VAKLLSSKTGLSINKYIRFTKSTLTELFDMVGNTTLTVPSEIKYENKKDNTVTIIKKGTQIFTAEQMYAYLTLPDYGVKD ELYPCKLNATVISSFIDQNFIGTSSKTLDEYINFIINFTNTNIEQSDYDAKVKAIVYTLSQNKSSVTDFYIPYGDKSGDD YIIDDNSWNSAKKALGTG ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4OBM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 259 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B0MNI4 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 281 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 281 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4OBM _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B0MNI4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4OBM # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;40.0000% 2-methyl-2,4-pentanediol, 5.0000% polyethylene glycol 8000, 0.1M sodium cacodylate pH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-11-26 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97953 1.0 3 0.9791 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97953,0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4OBM _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 46.189 _reflns.number_obs 14819 _reflns.pdbx_Rmerge_I_obs 0.100 _reflns.pdbx_netI_over_sigmaI 7.530 _reflns.percent_possible_obs 97.700 _reflns.B_iso_Wilson_estimate 32.011 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.150 2.230 4490 ? 1483 0.510 2.2 ? ? ? ? ? 98.000 1 1 2.230 2.320 4761 ? 1476 0.443 2.6 ? ? ? ? ? 99.000 2 1 2.320 2.420 4439 ? 1371 0.371 3.1 ? ? ? ? ? 98.400 3 1 2.420 2.550 4735 ? 1498 0.285 4.0 ? ? ? ? ? 98.600 4 1 2.550 2.710 4470 ? 1451 0.218 4.9 ? ? ? ? ? 96.900 5 1 2.710 2.920 4948 ? 1493 0.156 6.7 ? ? ? ? ? 99.100 6 1 2.920 3.210 4695 ? 1468 0.110 8.9 ? ? ? ? ? 98.800 7 1 3.210 3.670 4501 ? 1455 0.077 12.1 ? ? ? ? ? 96.100 8 1 3.670 4.610 4745 ? 1500 0.059 14.9 ? ? ? ? ? 97.300 9 1 4.610 ? 4650 ? 1593 0.055 15.0 ? ? ? ? ? 94.900 10 1 # _refine.entry_id 4OBM _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 46.189 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.7400 _refine.ls_number_reflns_obs 14779 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. PEG FRAGMENTS MODELED ARE PRESENT IN CRYSTALLIZATION CONDITIONS. ALTERNATIVELY, THE CORRESPONDING DENSITY FOR 1PE COULD BE MODELED AS FATTY ACIDS. 5. DUE TO WEAK DENSITIES, THE SIDE-CHAIN IDENTITIES OF N-TERMINAL 24-37 CANNOT BE ASSIGNED DEFINITELY. AS A RESULT, THEIR ASSIGNMENTS ARE TENTATIVE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2044 _refine.ls_R_factor_R_work 0.2022 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2453 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9900 _refine.ls_number_reflns_R_free 737 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.7843 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 17.9617 _refine.aniso_B[2][2] 3.2166 _refine.aniso_B[3][3] -21.1783 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.8602 _refine.correlation_coeff_Fo_to_Fc_free 0.8493 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 116.960 _refine.B_iso_min 12.430 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.230 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4OBM _refine_analyze.Luzzati_coordinate_error_obs 0.289 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2013 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 2197 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 46.189 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 981 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 60 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 290 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2086 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 300 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2539 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2086 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2826 1.070 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.970 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.800 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1500 _refine_ls_shell.d_res_low 2.3200 _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.percent_reflns_obs 97.7400 _refine_ls_shell.number_reflns_R_work 2847 _refine_ls_shell.R_factor_all 0.2274 _refine_ls_shell.R_factor_R_work 0.2250 _refine_ls_shell.R_factor_R_free 0.2744 _refine_ls_shell.percent_reflns_R_free 4.8800 _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2993 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a putative transcription regulator (EUBSIR_01389) from Eubacterium siraeum DSM 15702 at 2.15 A resolution' _struct.entry_id 4OBM _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF03816 family, LytR_cpsA_psr, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION REGULATOR ; _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.entry_id 4OBM # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 19 ? ASP A 23 ? ASP A 41 ASP A 45 5 ? 5 HELX_P HELX_P2 2 THR A 69 ? GLY A 91 ? THR A 91 GLY A 113 1 ? 23 HELX_P HELX_P3 3 THR A 101 ? GLY A 113 ? THR A 123 GLY A 135 1 ? 13 HELX_P HELX_P4 4 THR A 144 ? THR A 153 ? THR A 166 THR A 175 1 ? 10 HELX_P HELX_P5 5 LEU A 163 ? ILE A 182 ? LEU A 185 ILE A 204 1 ? 20 HELX_P HELX_P6 6 SER A 185 ? THR A 200 ? SER A 207 THR A 222 1 ? 16 HELX_P HELX_P7 7 GLU A 205 ? ALA A 211 ? GLU A 227 ALA A 233 1 ? 7 HELX_P HELX_P8 8 LYS A 212 ? SER A 221 ? LYS A 234 SER A 243 1 ? 10 HELX_P HELX_P9 9 ASP A 245 ? GLY A 257 ? ASP A 267 GLY A 279 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 27 C ? ? ? 1_555 A MSE 28 N ? ? A LEU 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.339 ? covale2 covale ? ? A MSE 28 C ? ? ? 1_555 A THR 29 N ? ? A MSE 50 A THR 51 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A TYR 41 C ? ? ? 1_555 A MSE 42 N ? ? A TYR 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.339 ? covale4 covale ? ? A MSE 42 C ? ? ? 1_555 A THR 43 N ? ? A MSE 64 A THR 65 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A LEU 55 C ? ? ? 1_555 A MSE 56 N ? ? A LEU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.337 ? covale6 covale ? ? A MSE 56 C ? ? ? 1_555 A PRO 57 N ? ? A MSE 78 A PRO 79 1_555 ? ? ? ? ? ? ? 1.345 ? covale7 covale ? ? A ASP 110 C ? ? ? 1_555 A MSE 111 N ? ? A ASP 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.318 ? covale8 covale ? ? A MSE 111 C ? ? ? 1_555 A VAL 112 N ? ? A MSE 133 A VAL 134 1_555 ? ? ? ? ? ? ? 1.340 ? covale9 covale ? ? A GLN 147 C ? ? ? 1_555 A MSE 148 N ? ? A GLN 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.362 ? covale10 covale ? ? A MSE 148 C ? ? ? 1_555 A TYR 149 N ? ? A MSE 170 A TYR 171 1_555 ? ? ? ? ? ? ? 1.359 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 201 ? THR A 202 ? ASN A 223 THR A 224 A 2 ILE A 94 ? PHE A 100 ? ILE A 116 PHE A 122 A 3 PHE A 24 ? LEU A 30 ? PHE A 46 LEU A 52 A 4 LYS A 40 ? ILE A 47 ? LYS A 62 ILE A 69 A 5 THR A 52 ? TYR A 58 ? THR A 74 TYR A 80 A 6 THR A 228 ? PHE A 230 ? THR A 250 PHE A 252 B 1 ALA A 62 ? VAL A 63 ? ALA A 84 VAL A 85 B 2 ASP A 241 ? ILE A 244 ? ASP A 263 ILE A 266 B 3 GLY A 235 ? SER A 238 ? GLY A 257 SER A 260 C 1 THR A 115 ? VAL A 119 ? THR A 137 VAL A 141 C 2 GLY A 139 ? PHE A 143 ? GLY A 161 PHE A 165 D 1 ILE A 123 ? ASN A 127 ? ILE A 145 ASN A 149 D 2 THR A 132 ? ILE A 136 ? THR A 154 ILE A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 201 ? O ASN A 223 N ARG A 99 ? N ARG A 121 A 2 3 O PHE A 100 ? O PHE A 122 N THR A 29 ? N THR A 51 A 3 4 N MSE A 28 ? N MSE A 50 O MSE A 42 ? O MSE A 64 A 4 5 N THR A 45 ? N THR A 67 O VAL A 54 ? O VAL A 76 A 5 6 N LEU A 55 ? N LEU A 77 O ASP A 229 ? O ASP A 251 B 1 2 N VAL A 63 ? N VAL A 85 O ILE A 244 ? O ILE A 266 B 2 3 O ASP A 241 ? O ASP A 263 N SER A 238 ? N SER A 260 C 1 2 N THR A 115 ? N THR A 137 O PHE A 143 ? O PHE A 165 D 1 2 N ILE A 123 ? N ILE A 145 O ILE A 136 ? O ILE A 158 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PG4 A 301' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE 1PE A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 95 ? ASN A 117 . ? 1_555 ? 2 AC1 4 ILE A 193 ? ILE A 215 . ? 1_555 ? 3 AC1 4 1PE C . ? 1PE A 302 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 522 . ? 1_555 ? 5 AC2 4 MSE A 28 ? MSE A 50 . ? 1_555 ? 6 AC2 4 ASN A 169 ? ASN A 191 . ? 1_555 ? 7 AC2 4 PG4 B . ? PG4 A 301 . ? 1_555 ? 8 AC2 4 HOH D . ? HOH A 431 . ? 1_555 ? # _atom_sites.entry_id 4OBM _atom_sites.fract_transf_matrix[1][1] 0.020201 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019430 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009550 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LYS 2 24 24 LYS LYS A . n A 1 3 ASP 3 25 25 ASP ASP A . n A 1 4 ALA 4 26 26 ALA ALA A . n A 1 5 THR 5 27 27 THR THR A . n A 1 6 VAL 6 28 28 VAL VAL A . n A 1 7 ASN 7 29 29 ASN ASN A . n A 1 8 VAL 8 30 30 VAL VAL A . n A 1 9 SER 9 31 31 SER SER A . n A 1 10 GLN 10 32 32 GLN GLN A . n A 1 11 ASN 11 33 33 ASN ASN A . n A 1 12 GLN 12 34 34 GLN GLN A . n A 1 13 THR 13 35 35 THR THR A . n A 1 14 ALA 14 36 36 ALA ALA A . n A 1 15 ILE 15 37 37 ILE ILE A . n A 1 16 PHE 16 38 38 PHE PHE A . n A 1 17 THR 17 39 39 THR THR A . n A 1 18 PRO 18 40 40 PRO PRO A . n A 1 19 ASP 19 41 41 ASP ASP A . n A 1 20 SER 20 42 42 SER SER A . n A 1 21 THR 21 43 43 THR THR A . n A 1 22 TYR 22 44 44 TYR TYR A . n A 1 23 ASP 23 45 45 ASP ASP A . n A 1 24 PHE 24 46 46 PHE PHE A . n A 1 25 SER 25 47 47 SER SER A . n A 1 26 VAL 26 48 48 VAL VAL A . n A 1 27 LEU 27 49 49 LEU LEU A . n A 1 28 MSE 28 50 50 MSE MSE A . n A 1 29 THR 29 51 51 THR THR A . n A 1 30 LEU 30 52 52 LEU LEU A . n A 1 31 SER 31 53 53 SER SER A . n A 1 32 ALA 32 54 54 ALA ALA A . n A 1 33 ASP 33 55 55 ASP ASP A . n A 1 34 ASN 34 56 56 ASN ASN A . n A 1 35 ASP 35 57 57 ASP ASP A . n A 1 36 LYS 36 58 58 LYS LYS A . n A 1 37 THR 37 59 59 THR THR A . n A 1 38 PRO 38 60 60 PRO PRO A . n A 1 39 ASP 39 61 61 ASP ASP A . n A 1 40 LYS 40 62 62 LYS LYS A . n A 1 41 TYR 41 63 63 TYR TYR A . n A 1 42 MSE 42 64 64 MSE MSE A . n A 1 43 THR 43 65 65 THR THR A . n A 1 44 ILE 44 66 66 ILE ILE A . n A 1 45 THR 45 67 67 THR THR A . n A 1 46 TYR 46 68 68 TYR TYR A . n A 1 47 ILE 47 69 69 ILE ILE A . n A 1 48 ALA 48 70 70 ALA ALA A . n A 1 49 LYS 49 71 71 LYS LYS A . n A 1 50 ASN 50 72 72 ASN ASN A . n A 1 51 ASN 51 73 73 ASN ASN A . n A 1 52 THR 52 74 74 THR THR A . n A 1 53 PHE 53 75 75 PHE PHE A . n A 1 54 VAL 54 76 76 VAL VAL A . n A 1 55 LEU 55 77 77 LEU LEU A . n A 1 56 MSE 56 78 78 MSE MSE A . n A 1 57 PRO 57 79 79 PRO PRO A . n A 1 58 TYR 58 80 80 TYR TYR A . n A 1 59 LEU 59 81 81 LEU LEU A . n A 1 60 PRO 60 82 82 PRO PRO A . n A 1 61 ASN 61 83 83 ASN ASN A . n A 1 62 ALA 62 84 84 ALA ALA A . n A 1 63 VAL 63 85 85 VAL VAL A . n A 1 64 ILE 64 86 86 ILE ILE A . n A 1 65 ASP 65 87 87 ASP ASP A . n A 1 66 GLY 66 88 88 GLY GLY A . n A 1 67 GLY 67 89 89 GLY GLY A . n A 1 68 ASN 68 90 90 ASN ASN A . n A 1 69 THR 69 91 91 THR THR A . n A 1 70 ILE 70 92 92 ILE ILE A . n A 1 71 LYS 71 93 93 LYS LYS A . n A 1 72 GLN 72 94 94 GLN GLN A . n A 1 73 ILE 73 95 95 ILE ILE A . n A 1 74 CYS 74 96 96 CYS CYS A . n A 1 75 GLU 75 97 97 GLU GLU A . n A 1 76 GLN 76 98 98 GLN GLN A . n A 1 77 SER 77 99 99 SER SER A . n A 1 78 GLY 78 100 100 GLY GLY A . n A 1 79 GLU 79 101 101 GLU GLU A . n A 1 80 ALA 80 102 102 ALA ALA A . n A 1 81 GLU 81 103 103 GLU GLU A . n A 1 82 VAL 82 104 104 VAL VAL A . n A 1 83 ALA 83 105 105 ALA ALA A . n A 1 84 LYS 84 106 106 LYS LYS A . n A 1 85 LEU 85 107 107 LEU LEU A . n A 1 86 LEU 86 108 108 LEU LEU A . n A 1 87 SER 87 109 109 SER SER A . n A 1 88 SER 88 110 110 SER SER A . n A 1 89 LYS 89 111 111 LYS LYS A . n A 1 90 THR 90 112 112 THR THR A . n A 1 91 GLY 91 113 113 GLY GLY A . n A 1 92 LEU 92 114 114 LEU LEU A . n A 1 93 SER 93 115 115 SER SER A . n A 1 94 ILE 94 116 116 ILE ILE A . n A 1 95 ASN 95 117 117 ASN ASN A . n A 1 96 LYS 96 118 118 LYS LYS A . n A 1 97 TYR 97 119 119 TYR TYR A . n A 1 98 ILE 98 120 120 ILE ILE A . n A 1 99 ARG 99 121 121 ARG ARG A . n A 1 100 PHE 100 122 122 PHE PHE A . n A 1 101 THR 101 123 123 THR THR A . n A 1 102 LYS 102 124 124 LYS LYS A . n A 1 103 SER 103 125 125 SER SER A . n A 1 104 THR 104 126 126 THR THR A . n A 1 105 LEU 105 127 127 LEU LEU A . n A 1 106 THR 106 128 128 THR THR A . n A 1 107 GLU 107 129 129 GLU GLU A . n A 1 108 LEU 108 130 130 LEU LEU A . n A 1 109 PHE 109 131 131 PHE PHE A . n A 1 110 ASP 110 132 132 ASP ASP A . n A 1 111 MSE 111 133 133 MSE MSE A . n A 1 112 VAL 112 134 134 VAL VAL A . n A 1 113 GLY 113 135 135 GLY GLY A . n A 1 114 ASN 114 136 136 ASN ASN A . n A 1 115 THR 115 137 137 THR THR A . n A 1 116 THR 116 138 138 THR THR A . n A 1 117 LEU 117 139 139 LEU LEU A . n A 1 118 THR 118 140 140 THR THR A . n A 1 119 VAL 119 141 141 VAL VAL A . n A 1 120 PRO 120 142 142 PRO PRO A . n A 1 121 SER 121 143 143 SER SER A . n A 1 122 GLU 122 144 144 GLU GLU A . n A 1 123 ILE 123 145 145 ILE ILE A . n A 1 124 LYS 124 146 146 LYS LYS A . n A 1 125 TYR 125 147 147 TYR TYR A . n A 1 126 GLU 126 148 148 GLU GLU A . n A 1 127 ASN 127 149 149 ASN ASN A . n A 1 128 LYS 128 150 150 LYS LYS A . n A 1 129 LYS 129 151 151 LYS LYS A . n A 1 130 ASP 130 152 152 ASP ASP A . n A 1 131 ASN 131 153 153 ASN ASN A . n A 1 132 THR 132 154 154 THR THR A . n A 1 133 VAL 133 155 155 VAL VAL A . n A 1 134 THR 134 156 156 THR THR A . n A 1 135 ILE 135 157 157 ILE ILE A . n A 1 136 ILE 136 158 158 ILE ILE A . n A 1 137 LYS 137 159 159 LYS LYS A . n A 1 138 LYS 138 160 160 LYS LYS A . n A 1 139 GLY 139 161 161 GLY GLY A . n A 1 140 THR 140 162 162 THR THR A . n A 1 141 GLN 141 163 163 GLN GLN A . n A 1 142 ILE 142 164 164 ILE ILE A . n A 1 143 PHE 143 165 165 PHE PHE A . n A 1 144 THR 144 166 166 THR THR A . n A 1 145 ALA 145 167 167 ALA ALA A . n A 1 146 GLU 146 168 168 GLU GLU A . n A 1 147 GLN 147 169 169 GLN GLN A . n A 1 148 MSE 148 170 170 MSE MSE A . n A 1 149 TYR 149 171 171 TYR TYR A . n A 1 150 ALA 150 172 172 ALA ALA A . n A 1 151 TYR 151 173 173 TYR TYR A . n A 1 152 LEU 152 174 174 LEU LEU A . n A 1 153 THR 153 175 175 THR THR A . n A 1 154 LEU 154 176 176 LEU LEU A . n A 1 155 PRO 155 177 177 PRO PRO A . n A 1 156 ASP 156 178 178 ASP ASP A . n A 1 157 TYR 157 179 179 TYR TYR A . n A 1 158 GLY 158 180 180 GLY GLY A . n A 1 159 VAL 159 181 181 VAL VAL A . n A 1 160 LYS 160 182 182 LYS LYS A . n A 1 161 ASP 161 183 183 ASP ASP A . n A 1 162 GLU 162 184 184 GLU GLU A . n A 1 163 LEU 163 185 185 LEU LEU A . n A 1 164 TYR 164 186 186 TYR TYR A . n A 1 165 PRO 165 187 187 PRO PRO A . n A 1 166 CYS 166 188 188 CYS CYS A . n A 1 167 LYS 167 189 189 LYS LYS A . n A 1 168 LEU 168 190 190 LEU LEU A . n A 1 169 ASN 169 191 191 ASN ASN A . n A 1 170 ALA 170 192 192 ALA ALA A . n A 1 171 THR 171 193 193 THR THR A . n A 1 172 VAL 172 194 194 VAL VAL A . n A 1 173 ILE 173 195 195 ILE ILE A . n A 1 174 SER 174 196 196 SER SER A . n A 1 175 SER 175 197 197 SER SER A . n A 1 176 PHE 176 198 198 PHE PHE A . n A 1 177 ILE 177 199 199 ILE ILE A . n A 1 178 ASP 178 200 200 ASP ASP A . n A 1 179 GLN 179 201 201 GLN GLN A . n A 1 180 ASN 180 202 202 ASN ASN A . n A 1 181 PHE 181 203 203 PHE PHE A . n A 1 182 ILE 182 204 204 ILE ILE A . n A 1 183 GLY 183 205 205 GLY GLY A . n A 1 184 THR 184 206 206 THR THR A . n A 1 185 SER 185 207 207 SER SER A . n A 1 186 SER 186 208 208 SER SER A . n A 1 187 LYS 187 209 209 LYS LYS A . n A 1 188 THR 188 210 210 THR THR A . n A 1 189 LEU 189 211 211 LEU LEU A . n A 1 190 ASP 190 212 212 ASP ASP A . n A 1 191 GLU 191 213 213 GLU GLU A . n A 1 192 TYR 192 214 214 TYR TYR A . n A 1 193 ILE 193 215 215 ILE ILE A . n A 1 194 ASN 194 216 216 ASN ASN A . n A 1 195 PHE 195 217 217 PHE PHE A . n A 1 196 ILE 196 218 218 ILE ILE A . n A 1 197 ILE 197 219 219 ILE ILE A . n A 1 198 ASN 198 220 220 ASN ASN A . n A 1 199 PHE 199 221 221 PHE PHE A . n A 1 200 THR 200 222 222 THR THR A . n A 1 201 ASN 201 223 223 ASN ASN A . n A 1 202 THR 202 224 224 THR THR A . n A 1 203 ASN 203 225 225 ASN ASN A . n A 1 204 ILE 204 226 226 ILE ILE A . n A 1 205 GLU 205 227 227 GLU GLU A . n A 1 206 GLN 206 228 228 GLN GLN A . n A 1 207 SER 207 229 229 SER SER A . n A 1 208 ASP 208 230 230 ASP ASP A . n A 1 209 TYR 209 231 231 TYR TYR A . n A 1 210 ASP 210 232 232 ASP ASP A . n A 1 211 ALA 211 233 233 ALA ALA A . n A 1 212 LYS 212 234 234 LYS LYS A . n A 1 213 VAL 213 235 235 VAL VAL A . n A 1 214 LYS 214 236 236 LYS LYS A . n A 1 215 ALA 215 237 237 ALA ALA A . n A 1 216 ILE 216 238 238 ILE ILE A . n A 1 217 VAL 217 239 239 VAL VAL A . n A 1 218 TYR 218 240 240 TYR TYR A . n A 1 219 THR 219 241 241 THR THR A . n A 1 220 LEU 220 242 242 LEU LEU A . n A 1 221 SER 221 243 243 SER SER A . n A 1 222 GLN 222 244 244 GLN GLN A . n A 1 223 ASN 223 245 245 ASN ASN A . n A 1 224 LYS 224 246 246 LYS LYS A . n A 1 225 SER 225 247 247 SER SER A . n A 1 226 SER 226 248 248 SER SER A . n A 1 227 VAL 227 249 249 VAL VAL A . n A 1 228 THR 228 250 250 THR THR A . n A 1 229 ASP 229 251 251 ASP ASP A . n A 1 230 PHE 230 252 252 PHE PHE A . n A 1 231 TYR 231 253 253 TYR TYR A . n A 1 232 ILE 232 254 254 ILE ILE A . n A 1 233 PRO 233 255 255 PRO PRO A . n A 1 234 TYR 234 256 256 TYR TYR A . n A 1 235 GLY 235 257 257 GLY GLY A . n A 1 236 ASP 236 258 258 ASP ASP A . n A 1 237 LYS 237 259 259 LYS LYS A . n A 1 238 SER 238 260 260 SER SER A . n A 1 239 GLY 239 261 261 GLY GLY A . n A 1 240 ASP 240 262 262 ASP ASP A . n A 1 241 ASP 241 263 263 ASP ASP A . n A 1 242 TYR 242 264 264 TYR TYR A . n A 1 243 ILE 243 265 265 ILE ILE A . n A 1 244 ILE 244 266 266 ILE ILE A . n A 1 245 ASP 245 267 267 ASP ASP A . n A 1 246 ASP 246 268 268 ASP ASP A . n A 1 247 ASN 247 269 269 ASN ASN A . n A 1 248 SER 248 270 270 SER SER A . n A 1 249 TRP 249 271 271 TRP TRP A . n A 1 250 ASN 250 272 272 ASN ASN A . n A 1 251 SER 251 273 273 SER SER A . n A 1 252 ALA 252 274 274 ALA ALA A . n A 1 253 LYS 253 275 275 LYS LYS A . n A 1 254 LYS 254 276 276 LYS LYS A . n A 1 255 ALA 255 277 277 ALA ALA A . n A 1 256 LEU 256 278 278 LEU LEU A . n A 1 257 GLY 257 279 279 GLY GLY A . n A 1 258 THR 258 280 280 THR THR A . n A 1 259 GLY 259 281 281 GLY GLY A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 1 301 301 PG4 PG4 A . C 3 1PE 1 302 302 1PE 1PE A . D 4 HOH 1 401 303 HOH HOH A . D 4 HOH 2 402 304 HOH HOH A . D 4 HOH 3 403 305 HOH HOH A . D 4 HOH 4 404 306 HOH HOH A . D 4 HOH 5 405 307 HOH HOH A . D 4 HOH 6 406 308 HOH HOH A . D 4 HOH 7 407 309 HOH HOH A . D 4 HOH 8 408 310 HOH HOH A . D 4 HOH 9 409 311 HOH HOH A . D 4 HOH 10 410 312 HOH HOH A . D 4 HOH 11 411 313 HOH HOH A . D 4 HOH 12 412 314 HOH HOH A . D 4 HOH 13 413 315 HOH HOH A . D 4 HOH 14 414 316 HOH HOH A . D 4 HOH 15 415 317 HOH HOH A . D 4 HOH 16 416 318 HOH HOH A . D 4 HOH 17 417 319 HOH HOH A . D 4 HOH 18 418 320 HOH HOH A . D 4 HOH 19 419 321 HOH HOH A . D 4 HOH 20 420 322 HOH HOH A . D 4 HOH 21 421 323 HOH HOH A . D 4 HOH 22 422 324 HOH HOH A . D 4 HOH 23 423 325 HOH HOH A . D 4 HOH 24 424 326 HOH HOH A . D 4 HOH 25 425 327 HOH HOH A . D 4 HOH 26 426 328 HOH HOH A . D 4 HOH 27 427 329 HOH HOH A . D 4 HOH 28 428 330 HOH HOH A . D 4 HOH 29 429 331 HOH HOH A . D 4 HOH 30 430 332 HOH HOH A . D 4 HOH 31 431 333 HOH HOH A . D 4 HOH 32 432 334 HOH HOH A . D 4 HOH 33 433 335 HOH HOH A . D 4 HOH 34 434 336 HOH HOH A . D 4 HOH 35 435 337 HOH HOH A . D 4 HOH 36 436 338 HOH HOH A . D 4 HOH 37 437 339 HOH HOH A . D 4 HOH 38 438 340 HOH HOH A . D 4 HOH 39 439 341 HOH HOH A . D 4 HOH 40 440 342 HOH HOH A . D 4 HOH 41 441 343 HOH HOH A . D 4 HOH 42 442 344 HOH HOH A . D 4 HOH 43 443 345 HOH HOH A . D 4 HOH 44 444 346 HOH HOH A . D 4 HOH 45 445 347 HOH HOH A . D 4 HOH 46 446 348 HOH HOH A . D 4 HOH 47 447 349 HOH HOH A . D 4 HOH 48 448 350 HOH HOH A . D 4 HOH 49 449 351 HOH HOH A . D 4 HOH 50 450 352 HOH HOH A . D 4 HOH 51 451 353 HOH HOH A . D 4 HOH 52 452 354 HOH HOH A . D 4 HOH 53 453 355 HOH HOH A . D 4 HOH 54 454 356 HOH HOH A . D 4 HOH 55 455 357 HOH HOH A . D 4 HOH 56 456 358 HOH HOH A . D 4 HOH 57 457 359 HOH HOH A . D 4 HOH 58 458 360 HOH HOH A . D 4 HOH 59 459 361 HOH HOH A . D 4 HOH 60 460 362 HOH HOH A . D 4 HOH 61 461 363 HOH HOH A . D 4 HOH 62 462 364 HOH HOH A . D 4 HOH 63 463 365 HOH HOH A . D 4 HOH 64 464 366 HOH HOH A . D 4 HOH 65 465 367 HOH HOH A . D 4 HOH 66 466 368 HOH HOH A . D 4 HOH 67 467 369 HOH HOH A . D 4 HOH 68 468 370 HOH HOH A . D 4 HOH 69 469 371 HOH HOH A . D 4 HOH 70 470 372 HOH HOH A . D 4 HOH 71 471 373 HOH HOH A . D 4 HOH 72 472 374 HOH HOH A . D 4 HOH 73 473 375 HOH HOH A . D 4 HOH 74 474 376 HOH HOH A . D 4 HOH 75 475 377 HOH HOH A . D 4 HOH 76 476 378 HOH HOH A . D 4 HOH 77 477 379 HOH HOH A . D 4 HOH 78 478 380 HOH HOH A . D 4 HOH 79 479 381 HOH HOH A . D 4 HOH 80 480 382 HOH HOH A . D 4 HOH 81 481 383 HOH HOH A . D 4 HOH 82 482 384 HOH HOH A . D 4 HOH 83 483 385 HOH HOH A . D 4 HOH 84 484 386 HOH HOH A . D 4 HOH 85 485 387 HOH HOH A . D 4 HOH 86 486 388 HOH HOH A . D 4 HOH 87 487 389 HOH HOH A . D 4 HOH 88 488 390 HOH HOH A . D 4 HOH 89 489 391 HOH HOH A . D 4 HOH 90 490 392 HOH HOH A . D 4 HOH 91 491 393 HOH HOH A . D 4 HOH 92 492 394 HOH HOH A . D 4 HOH 93 493 395 HOH HOH A . D 4 HOH 94 494 396 HOH HOH A . D 4 HOH 95 495 397 HOH HOH A . D 4 HOH 96 496 398 HOH HOH A . D 4 HOH 97 497 399 HOH HOH A . D 4 HOH 98 498 400 HOH HOH A . D 4 HOH 99 499 401 HOH HOH A . D 4 HOH 100 500 402 HOH HOH A . D 4 HOH 101 501 403 HOH HOH A . D 4 HOH 102 502 404 HOH HOH A . D 4 HOH 103 503 405 HOH HOH A . D 4 HOH 104 504 406 HOH HOH A . D 4 HOH 105 505 407 HOH HOH A . D 4 HOH 106 506 408 HOH HOH A . D 4 HOH 107 507 409 HOH HOH A . D 4 HOH 108 508 410 HOH HOH A . D 4 HOH 109 509 411 HOH HOH A . D 4 HOH 110 510 412 HOH HOH A . D 4 HOH 111 511 413 HOH HOH A . D 4 HOH 112 512 414 HOH HOH A . D 4 HOH 113 513 415 HOH HOH A . D 4 HOH 114 514 416 HOH HOH A . D 4 HOH 115 515 417 HOH HOH A . D 4 HOH 116 516 418 HOH HOH A . D 4 HOH 117 517 419 HOH HOH A . D 4 HOH 118 518 420 HOH HOH A . D 4 HOH 119 519 421 HOH HOH A . D 4 HOH 120 520 422 HOH HOH A . D 4 HOH 121 521 423 HOH HOH A . D 4 HOH 122 522 424 HOH HOH A . D 4 HOH 123 523 425 HOH HOH A . D 4 HOH 124 524 426 HOH HOH A . D 4 HOH 125 525 427 HOH HOH A . D 4 HOH 126 526 428 HOH HOH A . D 4 HOH 127 527 429 HOH HOH A . D 4 HOH 128 528 430 HOH HOH A . D 4 HOH 129 529 431 HOH HOH A . D 4 HOH 130 530 432 HOH HOH A . D 4 HOH 131 531 433 HOH HOH A . D 4 HOH 132 532 434 HOH HOH A . D 4 HOH 133 533 435 HOH HOH A . D 4 HOH 134 534 436 HOH HOH A . D 4 HOH 135 535 437 HOH HOH A . D 4 HOH 136 536 438 HOH HOH A . D 4 HOH 137 537 439 HOH HOH A . D 4 HOH 138 538 440 HOH HOH A . D 4 HOH 139 539 441 HOH HOH A . D 4 HOH 140 540 442 HOH HOH A . D 4 HOH 141 541 443 HOH HOH A . D 4 HOH 142 542 444 HOH HOH A . D 4 HOH 143 543 445 HOH HOH A . D 4 HOH 144 544 446 HOH HOH A . D 4 HOH 145 545 447 HOH HOH A . D 4 HOH 146 546 448 HOH HOH A . D 4 HOH 147 547 449 HOH HOH A . D 4 HOH 148 548 450 HOH HOH A . D 4 HOH 149 549 451 HOH HOH A . D 4 HOH 150 550 452 HOH HOH A . D 4 HOH 151 551 453 HOH HOH A . D 4 HOH 152 552 454 HOH HOH A . D 4 HOH 153 553 455 HOH HOH A . D 4 HOH 154 554 456 HOH HOH A . D 4 HOH 155 555 457 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 28 A MSE 50 ? MET SELENOMETHIONINE 2 A MSE 42 A MSE 64 ? MET SELENOMETHIONINE 3 A MSE 56 A MSE 78 ? MET SELENOMETHIONINE 4 A MSE 111 A MSE 133 ? MET SELENOMETHIONINE 5 A MSE 148 A MSE 170 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-12 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 46.0386 57.5590 11.7698 0.0156 -0.0153 0.0247 0.0113 -0.0510 0.0206 0.9763 0.0274 0.2633 -0.4481 0.6899 -0.1809 0.0041 0.0023 -0.0064 -0.0259 -0.0054 -0.0020 0.0266 0.0362 -0.0017 'X-RAY DIFFRACTION' 2 ? refined 69.2939 54.5823 41.2528 0.0327 -0.0282 -0.1859 0.0010 0.0020 -0.0178 1.2855 0.9922 0.6163 -0.2526 0.1220 0.1787 -0.0156 -0.0202 0.0358 0.2078 0.0275 -0.0252 -0.0872 -0.0075 0.0200 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 24 A 37 '{A|24 - 37}' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 38 A 281 '{A|38 - 281}' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (24-281) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.entry_id 4OBM # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 34 ? ? 60.68 -58.59 2 1 SER A 115 ? ? -115.00 76.14 3 1 ASP A 183 ? ? -37.66 107.20 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 24 ? CG ? A LYS 2 CG 2 1 Y 1 A LYS 24 ? CD ? A LYS 2 CD 3 1 Y 1 A LYS 24 ? CE ? A LYS 2 CE 4 1 Y 1 A LYS 24 ? NZ ? A LYS 2 NZ 5 1 Y 1 A VAL 28 ? CG1 ? A VAL 6 CG1 6 1 Y 1 A VAL 28 ? CG2 ? A VAL 6 CG2 7 1 Y 1 A ASN 33 ? CG ? A ASN 11 CG 8 1 Y 1 A ASN 33 ? OD1 ? A ASN 11 OD1 9 1 Y 1 A ASN 33 ? ND2 ? A ASN 11 ND2 10 1 Y 1 A ILE 37 ? CG1 ? A ILE 15 CG1 11 1 Y 1 A ILE 37 ? CG2 ? A ILE 15 CG2 12 1 Y 1 A ILE 37 ? CD1 ? A ILE 15 CD1 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TETRAETHYLENE GLYCOL' PG4 3 'PENTAETHYLENE GLYCOL' 1PE 4 water HOH #