HEADER HYDROLASE/HYDROLASE INHIBITOR 09-JAN-14 4OCZ TITLE CRYSTAL STRUCTURE OF HUMAN SOLUBLE EPOXIDE HYDROLASE COMPLEXED WITH 1- TITLE 2 (1-ISOBUTYRYLPIPERIDIN-4-YL)-3-(4-(TRIFLUOROMETHYL)PHENYL)UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC EPOXIDE HYDROLASE 2, CEH, EPOXIDE HYDRATASE, COMPND 5 SOLUBLE EPOXIDE HYDROLASE, SEH, LIPID-PHOSPHATE PHOSPHATASE; COMPND 6 EC: 3.3.2.10, 3.1.3.76; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ACHSEH1 KEYWDS DOMAIN-SWAPPED DIMER, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.S.S.LEE,J.LIU,K.M.WAGNER,S.PAKHOMOVA,H.DONG,C.MORRISEAU,S.H.FU, AUTHOR 2 J.YANG,P.WANG,A.ULU,C.MATE,L.NGUYEN,H.WULLF,M.L.ELDIN,A.A.MARA, AUTHOR 3 M.E.NEWCOMER,D.C.ZELDIN,B.D.HAMMOCK REVDAT 2 20-SEP-23 4OCZ 1 REMARK LINK REVDAT 1 24-SEP-14 4OCZ 0 JRNL AUTH K.S.LEE,J.Y.LIU,K.M.WAGNER,S.PAKHOMOVA,H.DONG,C.MORISSEAU, JRNL AUTH 2 S.H.FU,J.YANG,P.WANG,A.ULU,C.A.MATE,L.V.NGUYEN,S.H.HWANG, JRNL AUTH 3 M.L.EDIN,A.A.MARA,H.WULFF,M.E.NEWCOMER,D.C.ZELDIN, JRNL AUTH 4 B.D.HAMMOCK JRNL TITL OPTIMIZED INHIBITORS OF SOLUBLE EPOXIDE HYDROLASE IMPROVE IN JRNL TITL 2 VITRO TARGET RESIDENCE TIME AND IN VIVO EFFICACY. JRNL REF J.MED.CHEM. V. 57 7016 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25079952 JRNL DOI 10.1021/JM500694P REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 765 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.40000 REMARK 3 B22 (A**2) : 4.40000 REMARK 3 B33 (A**2) : -6.61000 REMARK 3 B12 (A**2) : 2.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.472 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4473 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3081 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6057 ; 1.801 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7523 ; 0.981 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 9.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;38.732 ;24.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;18.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4906 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 895 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6420 62.7820 -7.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.4003 REMARK 3 T33: 0.1068 T12: -0.0271 REMARK 3 T13: 0.0185 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.7745 L22: 4.3448 REMARK 3 L33: 0.8919 L12: -0.8108 REMARK 3 L13: 0.8156 L23: -1.0431 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.0212 S13: 0.0475 REMARK 3 S21: -0.7044 S22: 0.0395 S23: 0.0801 REMARK 3 S31: -0.0616 S32: -0.0506 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6650 39.5650 5.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.1199 REMARK 3 T33: 0.0705 T12: -0.0088 REMARK 3 T13: -0.0117 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.4356 L22: 1.0651 REMARK 3 L33: 1.3869 L12: 0.3209 REMARK 3 L13: -0.1367 L23: -0.7856 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0838 S13: 0.0718 REMARK 3 S21: -0.0819 S22: 0.0895 S23: 0.0534 REMARK 3 S31: -0.0305 S32: -0.0221 S33: -0.0503 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 420 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1570 4.8190 13.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.4550 REMARK 3 T33: 0.3851 T12: -0.0228 REMARK 3 T13: -0.0281 T23: -0.1157 REMARK 3 L TENSOR REMARK 3 L11: 0.3817 L22: 3.0973 REMARK 3 L33: 5.8783 L12: -0.9346 REMARK 3 L13: -0.1940 L23: -1.1434 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.1399 S13: -0.2751 REMARK 3 S21: -0.1300 S22: 0.2177 S23: 0.5981 REMARK 3 S31: 0.8445 S32: -1.2391 S33: -0.2342 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 421 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2540 16.7790 14.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.0895 REMARK 3 T33: 0.0886 T12: -0.0494 REMARK 3 T13: -0.0329 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 2.4637 L22: 1.3224 REMARK 3 L33: 2.1054 L12: -0.7856 REMARK 3 L13: -0.8199 L23: 0.0959 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.1509 S13: -0.2221 REMARK 3 S21: -0.0844 S22: -0.0093 S23: 0.1103 REMARK 3 S31: 0.2684 S32: -0.1163 S33: 0.0798 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 75.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65600 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1S8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3350, 0-10% SUCROSE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 162.24867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.12433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.68650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.56217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 202.81083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 162.24867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.12433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.56217 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.68650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 202.81083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 46.11450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 79.87266 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.56217 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 421 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 322 NH2 ARG A 351 2.01 REMARK 500 OD1 ASP A 205 OG1 THR A 208 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 17 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO A 161 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO A 161 C - N - CD ANGL. DEV. = -30.7 DEGREES REMARK 500 ASP A 185 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 185 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO A 268 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 PRO A 268 C - N - CD ANGL. DEV. = -21.7 DEGREES REMARK 500 ARG A 440 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 4 16.16 -149.27 REMARK 500 LEU A 10 -74.76 -98.48 REMARK 500 VAL A 13 -64.10 -122.54 REMARK 500 PRO A 17 92.03 37.86 REMARK 500 LEU A 23 -60.49 -18.17 REMARK 500 LYS A 79 76.76 51.69 REMARK 500 ASN A 85 48.97 -105.95 REMARK 500 ILE A 101 132.53 -36.78 REMARK 500 LYS A 115 45.47 -102.81 REMARK 500 PRO A 161 3.15 -153.20 REMARK 500 GLN A 204 -105.59 -111.74 REMARK 500 LEU A 221 -53.07 -121.44 REMARK 500 ASN A 223 -7.98 71.35 REMARK 500 THR A 224 137.50 -36.58 REMARK 500 LEU A 228 142.77 -38.58 REMARK 500 LYS A 245 146.40 167.70 REMARK 500 PRO A 268 93.07 -53.85 REMARK 500 GLU A 269 -150.68 -131.28 REMARK 500 ASP A 335 -121.43 51.28 REMARK 500 ASN A 359 -51.53 77.45 REMARK 500 ASN A 378 97.28 175.38 REMARK 500 ASP A 413 38.12 -75.62 REMARK 500 GLU A 414 -1.84 -152.54 REMARK 500 VAL A 416 41.37 -141.97 REMARK 500 LYS A 421 16.52 57.86 REMARK 500 VAL A 430 -33.54 -37.55 REMARK 500 GLU A 435 72.95 -119.96 REMARK 500 PRO A 487 127.61 -39.38 REMARK 500 LYS A 530 47.31 -140.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 16 PRO A 17 -116.28 REMARK 500 LYS A 160 PRO A 161 107.02 REMARK 500 PHE A 267 PRO A 268 -94.71 REMARK 500 MET A 291 ASP A 292 138.32 REMARK 500 SER A 418 MET A 419 -142.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 9 OD1 50.8 REMARK 620 3 ASP A 11 O 78.3 82.4 REMARK 620 4 ASP A 185 OD1 71.8 122.5 90.5 REMARK 620 5 PO4 A 601 O1 120.1 70.5 107.3 159.8 REMARK 620 6 HOH A 703 O 91.2 84.1 166.3 94.6 70.2 REMARK 620 7 HOH A 704 O 155.1 146.1 86.1 89.3 82.8 106.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2RU A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OD0 RELATED DB: PDB DBREF 4OCZ A 1 555 UNP P34913 HYES_HUMAN 1 555 SEQRES 1 A 555 MET THR LEU ARG ALA ALA VAL PHE ASP LEU ASP GLY VAL SEQRES 2 A 555 LEU ALA LEU PRO ALA VAL PHE GLY VAL LEU GLY ARG THR SEQRES 3 A 555 GLU GLU ALA LEU ALA LEU PRO ARG GLY LEU LEU ASN ASP SEQRES 4 A 555 ALA PHE GLN LYS GLY GLY PRO GLU GLY ALA THR THR ARG SEQRES 5 A 555 LEU MET LYS GLY GLU ILE THR LEU SER GLN TRP ILE PRO SEQRES 6 A 555 LEU MET GLU GLU ASN CYS ARG LYS CYS SER GLU THR ALA SEQRES 7 A 555 LYS VAL CYS LEU PRO LYS ASN PHE SER ILE LYS GLU ILE SEQRES 8 A 555 PHE ASP LYS ALA ILE SER ALA ARG LYS ILE ASN ARG PRO SEQRES 9 A 555 MET LEU GLN ALA ALA LEU MET LEU ARG LYS LYS GLY PHE SEQRES 10 A 555 THR THR ALA ILE LEU THR ASN THR TRP LEU ASP ASP ARG SEQRES 11 A 555 ALA GLU ARG ASP GLY LEU ALA GLN LEU MET CYS GLU LEU SEQRES 12 A 555 LYS MET HIS PHE ASP PHE LEU ILE GLU SER CYS GLN VAL SEQRES 13 A 555 GLY MET VAL LYS PRO GLU PRO GLN ILE TYR LYS PHE LEU SEQRES 14 A 555 LEU ASP THR LEU LYS ALA SER PRO SER GLU VAL VAL PHE SEQRES 15 A 555 LEU ASP ASP ILE GLY ALA ASN LEU LYS PRO ALA ARG ASP SEQRES 16 A 555 LEU GLY MET VAL THR ILE LEU VAL GLN ASP THR ASP THR SEQRES 17 A 555 ALA LEU LYS GLU LEU GLU LYS VAL THR GLY ILE GLN LEU SEQRES 18 A 555 LEU ASN THR PRO ALA PRO LEU PRO THR SER CYS ASN PRO SEQRES 19 A 555 SER ASP MET SER HIS GLY TYR VAL THR VAL LYS PRO ARG SEQRES 20 A 555 VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY PRO ALA SEQRES 21 A 555 VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP TYR SER SEQRES 22 A 555 TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA GLY TYR SEQRES 23 A 555 ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY GLU SER SEQRES 24 A 555 SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET GLU VAL SEQRES 25 A 555 LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS LEU GLY SEQRES 26 A 555 LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP GLY GLY SEQRES 27 A 555 MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO GLU ARG SEQRES 28 A 555 VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE ILE PRO SEQRES 29 A 555 ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE LYS ALA SEQRES 30 A 555 ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN GLU PRO SEQRES 31 A 555 GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SER ARG SEQRES 32 A 555 THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SER VAL SEQRES 33 A 555 LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY LEU PHE SEQRES 34 A 555 VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG MET VAL SEQRES 35 A 555 THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN PHE LYS SEQRES 36 A 555 LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR ARG ASN SEQRES 37 A 555 MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER LEU GLY SEQRES 38 A 555 ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR ALA GLU SEQRES 39 A 555 LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN HIS MET SEQRES 40 A 555 GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS ILE GLU SEQRES 41 A 555 ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO THR GLU SEQRES 42 A 555 VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER ASP ALA SEQRES 43 A 555 ARG ASN PRO PRO VAL VAL SER LYS MET HET PO4 A 601 5 HET MG A 602 1 HET 2RU A 603 25 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM 2RU 1-[1-(2-METHYLPROPANOYL)PIPERIDIN-4-YL]-3-[4- HETNAM 2 2RU (TRIFLUOROMETHYL)PHENYL]UREA FORMUL 2 PO4 O4 P 3- FORMUL 3 MG MG 2+ FORMUL 4 2RU C17 H22 F3 N3 O2 FORMUL 5 HOH *4(H2 O) HELIX 1 1 VAL A 19 LEU A 30 1 12 HELIX 2 2 GLY A 35 LYS A 43 1 9 HELIX 3 3 GLY A 44 GLU A 47 5 4 HELIX 4 4 GLY A 48 GLY A 56 1 9 HELIX 5 5 THR A 59 ALA A 78 1 20 HELIX 6 6 SER A 87 ARG A 99 1 13 HELIX 7 7 ASN A 102 LYS A 115 1 14 HELIX 8 8 ARG A 133 MET A 145 1 13 HELIX 9 9 SER A 153 GLY A 157 1 5 HELIX 10 10 GLU A 162 LYS A 174 1 13 HELIX 11 11 SER A 176 SER A 178 5 3 HELIX 12 12 ILE A 186 LEU A 196 1 11 HELIX 13 13 ASP A 205 GLY A 218 1 14 HELIX 14 14 ASN A 233 MET A 237 5 5 HELIX 15 15 SER A 270 ARG A 275 5 6 HELIX 16 16 TYR A 276 TYR A 286 1 11 HELIX 17 17 GLU A 304 TYR A 308 5 5 HELIX 18 18 CYS A 309 GLY A 325 1 17 HELIX 19 19 ASP A 335 TYR A 348 1 14 HELIX 20 20 SER A 370 ALA A 377 1 8 HELIX 21 21 ASN A 378 VAL A 380 5 3 HELIX 22 22 PHE A 381 PHE A 387 1 7 HELIX 23 23 GLY A 391 GLN A 399 1 9 HELIX 24 24 ASN A 400 PHE A 409 1 10 HELIX 25 25 ALA A 411 SER A 415 5 5 HELIX 26 26 LYS A 421 GLY A 426 1 6 HELIX 27 27 THR A 443 GLY A 458 1 16 HELIX 28 28 PHE A 459 TRP A 465 1 7 HELIX 29 29 ASN A 468 LYS A 478 1 11 HELIX 30 30 HIS A 506 TRP A 510 5 5 HELIX 31 31 TRP A 525 LYS A 530 1 6 HELIX 32 32 LYS A 530 ALA A 546 1 17 SHEET 1 A 5 PHE A 149 GLU A 152 0 SHEET 2 A 5 THR A 118 THR A 123 1 N ILE A 121 O ILE A 151 SHEET 3 A 5 ALA A 5 PHE A 8 1 N ALA A 6 O ALA A 120 SHEET 4 A 5 VAL A 180 ASP A 184 1 O VAL A 181 N VAL A 7 SHEET 5 A 5 VAL A 199 LEU A 202 1 O VAL A 199 N PHE A 182 SHEET 1 B 2 ALA A 15 LEU A 16 0 SHEET 2 B 2 LYS A 100 ILE A 101 -1 O LYS A 100 N LEU A 16 SHEET 1 C 8 SER A 238 LYS A 245 0 SHEET 2 C 8 VAL A 248 GLY A 256 -1 O PHE A 252 N GLY A 240 SHEET 3 C 8 ARG A 287 ASP A 292 -1 O ALA A 290 N VAL A 253 SHEET 4 C 8 ALA A 260 CYS A 264 1 N VAL A 261 O LEU A 289 SHEET 5 C 8 ALA A 329 HIS A 334 1 O VAL A 330 N CYS A 262 SHEET 6 C 8 VAL A 352 LEU A 358 1 O ALA A 354 N PHE A 331 SHEET 7 C 8 ALA A 488 ALA A 493 1 O VAL A 491 N SER A 357 SHEET 8 C 8 LYS A 515 ILE A 519 1 O ILE A 519 N THR A 492 LINK OD2 ASP A 9 MG MG A 602 1555 1555 1.91 LINK OD1 ASP A 9 MG MG A 602 1555 1555 2.78 LINK O ASP A 11 MG MG A 602 1555 1555 2.20 LINK OD1 ASP A 185 MG MG A 602 1555 1555 1.94 LINK O1 PO4 A 601 MG MG A 602 1555 1555 1.97 LINK MG MG A 602 O HOH A 703 1555 1555 1.93 LINK MG MG A 602 O HOH A 704 1555 1555 1.93 SITE 1 AC1 9 ASP A 9 LEU A 10 ASP A 11 THR A 123 SITE 2 AC1 9 ASN A 124 LYS A 160 MG A 602 HOH A 703 SITE 3 AC1 9 HOH A 704 SITE 1 AC2 6 ASP A 9 ASP A 11 ASP A 185 PO4 A 601 SITE 2 AC2 6 HOH A 703 HOH A 704 SITE 1 AC3 9 PHE A 267 ASP A 335 TRP A 336 MET A 339 SITE 2 AC3 9 THR A 360 TYR A 383 PHE A 387 LEU A 408 SITE 3 AC3 9 TYR A 466 CRYST1 92.229 92.229 243.373 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010843 0.006260 0.000000 0.00000 SCALE2 0.000000 0.012520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004109 0.00000