HEADER IMMUNE SYSTEM 09-JAN-14 4OD3 TITLE CRYSTAL STRUCTURE OF HUMAN FAB CAP256-VRC26.07, A POTENT V1V2-DIRECTED TITLE 2 HIV-1 NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAP256-VRC26.07 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAP256-VRC26.07 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS FAB, HIV-1, V1V2, CAP256, VRC26, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,N.A.DORIA-ROSE,C.A.SCHRAMM,P.L.MOORE,J.R.MASCOLA,L.SHAPIRO, AUTHOR 2 L.MORRIS,P.D.KWONG REVDAT 6 30-OCT-24 4OD3 1 REMARK REVDAT 5 06-DEC-23 4OD3 1 REMARK REVDAT 4 20-SEP-23 4OD3 1 REMARK LINK REVDAT 3 14-MAY-14 4OD3 1 JRNL REVDAT 2 02-APR-14 4OD3 1 JRNL REVDAT 1 26-FEB-14 4OD3 0 JRNL AUTH N.A.DORIA-ROSE,C.A.SCHRAMM,J.GORMAN,P.L.MOORE,J.N.BHIMAN, JRNL AUTH 2 B.J.DEKOSKY,M.J.ERNANDES,I.S.GEORGIEV,H.J.KIM,M.PANCERA, JRNL AUTH 3 R.P.STAUPE,H.R.ALTAE-TRAN,R.T.BAILER,E.T.CROOKS,A.CUPO, JRNL AUTH 4 A.DRUZ,N.J.GARRETT,K.H.HOI,R.KONG,M.K.LOUDER,N.S.LONGO, JRNL AUTH 5 K.MCKEE,M.NONYANE,S.O'DELL,R.S.ROARK,R.S.RUDICELL, JRNL AUTH 6 S.D.SCHMIDT,D.J.SHEWARD,C.SOTO,C.K.WIBMER,Y.YANG,Z.ZHANG, JRNL AUTH 7 NISC COMPARATIVE SEQUENCING,J.C.MULLIKIN,J.M.BINLEY, JRNL AUTH 8 R.W.SANDERS,I.A.WILSON,J.P.MOORE,A.B.WARD,G.GEORGIOU, JRNL AUTH 9 C.WILLIAMSON,S.S.ABDOOL KARIM,L.MORRIS,P.D.KWONG,L.SHAPIRO, JRNL AUTH10 J.R.MASCOLA JRNL TITL DEVELOPMENTAL PATHWAY FOR POTENT V1V2-DIRECTED JRNL TITL 2 HIV-NEUTRALIZING ANTIBODIES. JRNL REF NATURE V. 509 55 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24590074 JRNL DOI 10.1038/NATURE13036 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 19901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9091 - 5.0020 1.00 3042 161 0.2017 0.2183 REMARK 3 2 5.0020 - 3.9714 1.00 2930 154 0.1752 0.1980 REMARK 3 3 3.9714 - 3.4697 1.00 2887 152 0.2275 0.2548 REMARK 3 4 3.4697 - 3.1526 1.00 2870 151 0.2490 0.2729 REMARK 3 5 3.1526 - 2.9268 1.00 2841 150 0.2956 0.3336 REMARK 3 6 2.9268 - 2.7542 0.91 2609 138 0.3164 0.3355 REMARK 3 7 2.7542 - 2.6160 0.61 1725 91 0.3319 0.3734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3459 REMARK 3 ANGLE : 1.014 4704 REMARK 3 CHIRALITY : 0.058 526 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 13.514 1236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN L AND ( RESID 2 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7008 -19.1480 -22.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.6673 T22: 0.6456 REMARK 3 T33: 0.5495 T12: 0.0134 REMARK 3 T13: -0.0740 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.0512 L22: 1.2020 REMARK 3 L33: 0.8986 L12: 0.2270 REMARK 3 L13: -0.5085 L23: -0.5935 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.0816 S13: -0.0697 REMARK 3 S21: 0.0018 S22: -0.0495 S23: -0.2406 REMARK 3 S31: 0.0863 S32: 0.3546 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN L AND ( RESID 104 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9313 -17.1093 -50.8036 REMARK 3 T TENSOR REMARK 3 T11: 0.4777 T22: 0.4586 REMARK 3 T33: 0.4936 T12: 0.0196 REMARK 3 T13: 0.0073 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.5844 L22: 1.3984 REMARK 3 L33: 1.4707 L12: -0.0381 REMARK 3 L13: 0.0496 L23: -0.5780 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.0324 S13: 0.1087 REMARK 3 S21: -0.0294 S22: 0.0242 S23: -0.1509 REMARK 3 S31: 0.0170 S32: -0.0634 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN H AND ( RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4248 -14.8392 -15.9969 REMARK 3 T TENSOR REMARK 3 T11: 0.6015 T22: 0.6444 REMARK 3 T33: 0.7027 T12: -0.0913 REMARK 3 T13: 0.0508 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.8934 L22: 1.1896 REMARK 3 L33: 1.7518 L12: -0.4539 REMARK 3 L13: 0.1377 L23: 0.5211 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.1006 S13: -0.2333 REMARK 3 S21: 0.1916 S22: -0.0228 S23: 0.6444 REMARK 3 S31: 0.0080 S32: -0.0666 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN H AND ( RESID 110 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3922 -25.9559 -56.1564 REMARK 3 T TENSOR REMARK 3 T11: 0.5111 T22: 0.5208 REMARK 3 T33: 0.6787 T12: -0.0014 REMARK 3 T13: 0.0257 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 2.5631 L22: 0.5493 REMARK 3 L33: 0.8119 L12: 0.7577 REMARK 3 L13: -0.0481 L23: -0.6734 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: 0.0417 S13: -0.6629 REMARK 3 S21: 0.0147 S22: -0.0285 S23: -0.2644 REMARK 3 S31: 0.0179 S32: -0.1796 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.616 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG8000, 0.1 M ZINC ACETATE, 0.1 M REMARK 280 MES, PH 6, CRYOPROTECTANT: 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.63400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.17550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.63400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.17550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.63400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.17550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.63400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.17550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN L 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLU H 1 REMARK 465 TRP H 100E REMARK 465 SER H 100F REMARK 465 ASP H 100G REMARK 465 TYS H 100H REMARK 465 TYS H 100I REMARK 465 ASP H 100J REMARK 465 PHE H 100K REMARK 465 GLY H 100L REMARK 465 LYS H 100M REMARK 465 LYS H 100N REMARK 465 LEU H 100O REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY H 219 REMARK 465 LEU H 220 REMARK 465 GLU H 221 REMARK 465 VAL H 222 REMARK 465 LEU H 223 REMARK 465 PHE H 224 REMARK 465 GLN H 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 27B -93.93 -101.66 REMARK 500 SER L 51 -48.33 71.47 REMARK 500 PRO L 59 150.44 -49.89 REMARK 500 ASN L 95A 72.98 -163.21 REMARK 500 ASP L 151 -120.27 52.46 REMARK 500 GLN L 167 -169.81 -73.37 REMARK 500 HIS L 197 114.73 -161.49 REMARK 500 ARG H 16 -165.50 -79.80 REMARK 500 LYS H 43 -156.61 -117.76 REMARK 500 ARG H 66 -20.98 -141.39 REMARK 500 GLN H 105 -42.55 66.28 REMARK 500 LYS H 129 31.20 -89.80 REMARK 500 SER H 132 153.51 65.90 REMARK 500 PRO H 147 -158.20 -86.92 REMARK 500 SER H 161 87.54 -151.11 REMARK 500 THR H 191 -50.87 -135.62 REMARK 500 LYS H 214 176.10 58.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 161 GLY H 162 142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 138 OD2 REMARK 620 2 HIS H 164 NE2 85.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 151 OD2 REMARK 620 2 HIS L 188 ND1 106.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCR RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OCS RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OCW RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OD1 RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4ODH RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4ORG RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE DBREF 4OD3 H 1 225 PDB 4OD3 4OD3 1 225 DBREF 4OD3 L 1 212 PDB 4OD3 4OD3 1 212 SEQRES 1 L 217 GLN ALA VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 217 PRO GLY GLN ASN VAL THR ILE SER CYS SER GLY SER GLY SEQRES 3 L 217 SER ASN ILE GLY ASN ASN PHE VAL SER TRP TYR GLN GLN SEQRES 4 L 217 ARG PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLU SER SEQRES 5 L 217 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER LYS SER GLY THR SER ALA THR LEU ALA ILE THR GLY SEQRES 7 L 217 LEU GLN THR GLY ASP GLU ALA TYR TYR TYR CYS ALA THR SEQRES 8 L 217 TRP ALA ALA ARG LEU ASN SER ALA ARG VAL PHE GLY THR SEQRES 9 L 217 GLY THR MET VAL THR VAL LEU GLY GLN PRO LYS ALA ASN SEQRES 10 L 217 PRO THR VAL THR LEU TYR PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 256 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 256 PRO GLY ARG SER LEU ARG LEU SER CYS VAL GLY SER GLN SEQRES 3 H 256 PHE SER PHE ASN ARG TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 256 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA GLY ILE SER SEQRES 5 H 256 PHE ASP GLY THR ASP ARG TYR HIS ALA ASP ASN VAL TRP SEQRES 6 H 256 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 256 LEU TYR LEU GLN MET SER SER LEU ARG ALA GLU ASP THR SEQRES 8 H 256 ALA LEU TYR TYR CYS ALA LYS ASP LEU ARG GLU ASP GLU SEQRES 9 H 256 CYS GLU GLU TRP TRP SER ASP TYS TYS ASP PHE GLY LYS SEQRES 10 H 256 LYS LEU PRO CYS ARG LYS SER ARG GLY VAL ALA GLY VAL SEQRES 11 H 256 PHE ASP LYS TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 12 H 256 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 13 H 256 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 14 H 256 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 15 H 256 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 16 H 256 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 17 H 256 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 18 H 256 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 19 H 256 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 20 H 256 ASP LYS GLY LEU GLU VAL LEU PHE GLN HET ZN L 301 1 HET ZN L 302 1 HET MES H 301 25 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 5 MES C6 H13 N O4 S FORMUL 6 HOH *16(H2 O) HELIX 1 1 ASN L 27B ASN L 31 5 5 HELIX 2 2 GLN L 79 GLU L 83 5 5 HELIX 3 3 SER L 121 GLN L 126 1 6 HELIX 4 4 THR L 181 HIS L 188 1 8 HELIX 5 5 SER H 28 ASN H 30 5 3 HELIX 6 6 ARG H 83 THR H 87 5 5 HELIX 7 7 SER H 127 THR H 131 5 5 HELIX 8 8 SER H 156 ALA H 158 5 3 HELIX 9 9 LYS H 201 ASN H 204 5 4 SHEET 1 A 5 SER L 9 ALA L 13 0 SHEET 2 A 5 THR L 102 VAL L 106 1 O MET L 103 N VAL L 11 SHEET 3 A 5 ALA L 84 ALA L 89 -1 N TYR L 86 O THR L 102 SHEET 4 A 5 SER L 34 GLN L 38 -1 N GLN L 38 O TYR L 85 SHEET 5 A 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 B 3 VAL L 19 SER L 24 0 SHEET 2 B 3 SER L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 3 B 3 PHE L 62 SER L 67 -1 N SER L 67 O SER L 70 SHEET 1 C 4 THR L 114 TYR L 118 0 SHEET 2 C 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 C 4 TYR L 172 LEU L 180 -1 O LEU L 180 N ALA L 130 SHEET 4 C 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 D 4 THR L 114 TYR L 118 0 SHEET 2 D 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 D 4 TYR L 172 LEU L 180 -1 O LEU L 180 N ALA L 130 SHEET 4 D 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 E 4 SER L 153 VAL L 155 0 SHEET 2 E 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 E 4 TYR L 191 THR L 196 -1 O GLN L 194 N ALA L 147 SHEET 4 E 4 THR L 201 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O VAL H 23 N VAL H 5 SHEET 3 F 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 G 6 VAL H 11 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 GLU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 ARG H 57 HIS H 59 -1 O TYR H 58 N GLY H 50 SHEET 1 H 4 VAL H 11 VAL H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 H 4 ALA H 88 GLU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 H 4 PHE H 101 TRP H 103 -1 O LYS H 102 N LYS H 94 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 I 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 I 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 J 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 K 3 THR H 151 TRP H 154 0 SHEET 2 K 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 K 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 193 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 4 CYS H 100A CYS H 100Q 1555 1555 2.04 SSBOND 5 CYS H 140 CYS H 196 1555 1555 2.05 LINK OD2 ASP L 138 ZN ZN L 301 1555 1555 2.49 LINK OD2 ASP L 151 ZN ZN L 302 1555 1555 2.35 LINK ND1 HIS L 188 ZN ZN L 302 1555 1555 2.35 LINK ZN ZN L 301 NE2 HIS H 164 1555 1555 2.41 CISPEP 1 SER L 26 GLY L 27 0 14.06 CISPEP 2 THR L 100 GLY L 101 0 -6.03 CISPEP 3 TYR L 140 PRO L 141 0 -2.92 CISPEP 4 PRO H 41 GLY H 42 0 -11.16 CISPEP 5 PHE H 146 PRO H 147 0 -7.29 CISPEP 6 GLU H 148 PRO H 149 0 -4.39 SITE 1 AC1 2 HIS H 164 ASP L 138 SITE 1 AC2 2 ASP L 151 HIS L 188 SITE 1 AC3 6 SER H 156 ASN H 197 LYS H 206 ASP H 208 SITE 2 AC3 6 GLN L 194 THR L 201 CRYST1 70.550 87.268 224.351 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004457 0.00000