HEADER IMMUNE SYSTEM 10-JAN-14 4ODH TITLE CRYSTAL STRUCTURE OF HUMAN FAB CAP256-VRC26.UCA, A POTENT V1V2- TITLE 2 DIRECTED HIV-1 NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAP256-VRC26.UCA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAP256-VRC26.UCA HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS FAB, HIV-1, V1V2, CAP256, VRC26, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,N.A.DORIA-ROSE,C.A.SCHRAMM,P.L.MOORE,J.R.MASCOLA,L.SHAPIRO, AUTHOR 2 L.MORRIS,P.D.KWONG REVDAT 6 30-OCT-24 4ODH 1 REMARK REVDAT 5 06-DEC-23 4ODH 1 REMARK REVDAT 4 20-SEP-23 4ODH 1 REMARK REVDAT 3 14-MAY-14 4ODH 1 JRNL REVDAT 2 02-APR-14 4ODH 1 JRNL REVDAT 1 26-FEB-14 4ODH 0 JRNL AUTH N.A.DORIA-ROSE,C.A.SCHRAMM,J.GORMAN,P.L.MOORE,J.N.BHIMAN, JRNL AUTH 2 B.J.DEKOSKY,M.J.ERNANDES,I.S.GEORGIEV,H.J.KIM,M.PANCERA, JRNL AUTH 3 R.P.STAUPE,H.R.ALTAE-TRAN,R.T.BAILER,E.T.CROOKS,A.CUPO, JRNL AUTH 4 A.DRUZ,N.J.GARRETT,K.H.HOI,R.KONG,M.K.LOUDER,N.S.LONGO, JRNL AUTH 5 K.MCKEE,M.NONYANE,S.O'DELL,R.S.ROARK,R.S.RUDICELL, JRNL AUTH 6 S.D.SCHMIDT,D.J.SHEWARD,C.SOTO,C.K.WIBMER,Y.YANG,Z.ZHANG, JRNL AUTH 7 NISC COMPARATIVE SEQUENCING,J.C.MULLIKIN,J.M.BINLEY, JRNL AUTH 8 R.W.SANDERS,I.A.WILSON,J.P.MOORE,A.B.WARD,G.GEORGIOU, JRNL AUTH 9 C.WILLIAMSON,S.S.ABDOOL KARIM,L.MORRIS,P.D.KWONG,L.SHAPIRO, JRNL AUTH10 J.R.MASCOLA JRNL TITL DEVELOPMENTAL PATHWAY FOR POTENT V1V2-DIRECTED JRNL TITL 2 HIV-NEUTRALIZING ANTIBODIES. JRNL REF NATURE V. 509 55 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24590074 JRNL DOI 10.1038/NATURE13036 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 7500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1458 - 4.1717 0.84 2386 126 0.1946 0.1995 REMARK 3 2 4.1717 - 3.3122 0.88 2446 130 0.2348 0.2616 REMARK 3 3 3.3122 - 2.8940 0.83 2292 120 0.2858 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3278 REMARK 3 ANGLE : 0.829 4461 REMARK 3 CHIRALITY : 0.045 509 REMARK 3 PLANARITY : 0.006 570 REMARK 3 DIHEDRAL : 13.603 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN L AND ( RESID 2 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0888 -17.6802 123.0713 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.3104 REMARK 3 T33: 0.3155 T12: -0.0005 REMARK 3 T13: -0.0478 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: -0.0417 REMARK 3 L33: 0.1964 L12: -0.0437 REMARK 3 L13: -0.0486 L23: -0.1371 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.0363 S13: -0.1239 REMARK 3 S21: 0.0316 S22: -0.0292 S23: 0.0932 REMARK 3 S31: 0.0216 S32: 0.0559 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN L AND ( RESID 91 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4812 -14.0316 129.1604 REMARK 3 T TENSOR REMARK 3 T11: 0.4446 T22: 0.3969 REMARK 3 T33: 0.4001 T12: -0.0491 REMARK 3 T13: 0.0469 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.0296 L22: 0.0046 REMARK 3 L33: 0.0183 L12: 0.0405 REMARK 3 L13: 0.0229 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: 0.0835 S13: -0.1523 REMARK 3 S21: 0.0199 S22: 0.0618 S23: -0.1548 REMARK 3 S31: 0.1168 S32: -0.1321 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L AND ( RESID 114 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9215 -2.4386 140.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.3389 REMARK 3 T33: 0.3669 T12: 0.0166 REMARK 3 T13: 0.0191 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.0271 L22: 0.0969 REMARK 3 L33: 0.0784 L12: -0.0525 REMARK 3 L13: -0.1500 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0791 S13: 0.1099 REMARK 3 S21: 0.0869 S22: 0.0058 S23: -0.0527 REMARK 3 S31: 0.0768 S32: -0.0220 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN H AND ( RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8613 10.9849 118.5115 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.3977 REMARK 3 T33: -0.5913 T12: 0.1618 REMARK 3 T13: -0.2131 T23: 0.7776 REMARK 3 L TENSOR REMARK 3 L11: -0.0168 L22: -0.0380 REMARK 3 L33: -0.0304 L12: -0.0601 REMARK 3 L13: -0.0804 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.1099 S13: -0.2870 REMARK 3 S21: 0.0075 S22: 0.1527 S23: -0.3721 REMARK 3 S31: 0.0014 S32: -0.1258 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN H AND ( RESID 18 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2557 1.0269 111.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.3304 REMARK 3 T33: 0.2874 T12: 0.0091 REMARK 3 T13: 0.0194 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 0.1270 L22: 0.1206 REMARK 3 L33: 0.1520 L12: -0.0885 REMARK 3 L13: 0.1807 L23: -0.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0738 S13: -0.1623 REMARK 3 S21: 0.0459 S22: -0.0517 S23: -0.0162 REMARK 3 S31: -0.2441 S32: -0.0117 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN H AND ( RESID 110 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5119 9.4434 142.8319 REMARK 3 T TENSOR REMARK 3 T11: 0.2889 T22: 0.3717 REMARK 3 T33: 0.4911 T12: -0.0147 REMARK 3 T13: -0.0227 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.0599 L22: 0.0173 REMARK 3 L33: 0.0332 L12: 0.0044 REMARK 3 L13: 0.0546 L23: 0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.0134 S13: 0.1843 REMARK 3 S21: 0.0181 S22: 0.0454 S23: -0.0372 REMARK 3 S31: 0.1745 S32: 0.0712 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN H AND ( RESID 146 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7126 10.2291 148.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.3924 REMARK 3 T33: 0.5316 T12: -0.0329 REMARK 3 T13: -0.0185 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.1365 L22: 0.1119 REMARK 3 L33: -0.0040 L12: -0.0350 REMARK 3 L13: -0.0503 L23: 0.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.1321 S13: -0.0782 REMARK 3 S21: 0.1503 S22: 0.0192 S23: -0.4143 REMARK 3 S31: 0.0147 S32: -0.0957 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.894 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG8000, 0.1 M HEPES, PH 7.5, REMARK 280 CRYOPROTECTANT: 20% PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 SER L 93A REMARK 465 LEU L 93B REMARK 465 SER L 93C REMARK 465 ALA L 93D REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLN H 1 REMARK 465 GLU H 100B REMARK 465 GLU H 100C REMARK 465 TRP H 100D REMARK 465 ALA H 100E REMARK 465 THR H 100F REMARK 465 ASP H 100G REMARK 465 TYS H 100H REMARK 465 TYS H 100I REMARK 465 ASP H 100J REMARK 465 PHE H 100K REMARK 465 SER H 100L REMARK 465 ILE H 100M REMARK 465 GLY H 100N REMARK 465 TYR H 100O REMARK 465 PRO H 100P REMARK 465 GLY H 100Q REMARK 465 GLN H 100R REMARK 465 ASP H 100S REMARK 465 PRO H 100T REMARK 465 ARG H 100U REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO L 154 OH TYR H 58 2759 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 51 -56.99 72.00 REMARK 500 ALA L 127 16.15 -142.94 REMARK 500 ASP L 138 60.75 33.21 REMARK 500 ASP L 151 -130.18 55.23 REMARK 500 GLN L 167 -152.90 -90.15 REMARK 500 ASN L 170 -2.67 64.73 REMARK 500 PHE H 29 -41.17 75.24 REMARK 500 VAL H 48 -74.79 -94.45 REMARK 500 GLU H 100 -153.23 62.31 REMARK 500 VAL H 100W -57.90 -139.30 REMARK 500 SER H 112 111.24 -160.89 REMARK 500 PHE H 146 130.87 -174.24 REMARK 500 PRO H 147 -110.11 -81.70 REMARK 500 GLU H 148 84.45 -156.18 REMARK 500 VAL H 150 131.76 -35.73 REMARK 500 ALA H 158 32.48 -86.46 REMARK 500 LEU H 159 94.08 -161.74 REMARK 500 LEU H 175 -155.04 -110.16 REMARK 500 PRO H 213 -165.57 -75.34 REMARK 500 LYS H 214 -145.38 -111.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCR RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OCS RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OCW RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OD1 RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4OD3 RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE REMARK 900 RELATED ID: 4ORG RELATED DB: PDB REMARK 900 ANTIBODY FROM THE SAME LINEAGE DBREF 4ODH H 1 218 PDB 4ODH 4ODH 1 218 DBREF 4ODH L 1 212 PDB 4ODH 4ODH 1 212 SEQRES 1 L 217 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 217 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 217 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN GLN SEQRES 4 L 217 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLU ASN SEQRES 5 L 217 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 L 217 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 L 217 TRP ASP SER SER LEU SER ALA GLY GLY VAL PHE GLY THR SEQRES 9 L 217 GLY THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN SEQRES 10 L 217 PRO THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 249 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 249 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 249 PHE THR PHE SER SER TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 249 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 H 249 TYR ASP GLY SER ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 249 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 249 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 249 ALA VAL TYR TYR CYS ALA LYS ASP LEU GLY GLU SER GLU SEQRES 9 H 249 ASN GLU GLU TRP ALA THR ASP TYS TYS ASP PHE SER ILE SEQRES 10 H 249 GLY TYR PRO GLY GLN ASP PRO ARG GLY VAL VAL GLY ALA SEQRES 11 H 249 PHE ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 12 H 249 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 13 H 249 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 14 H 249 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 15 H 249 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 16 H 249 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 17 H 249 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 18 H 249 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 19 H 249 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 20 H 249 ASP LYS FORMUL 3 HOH *17(H2 O) HELIX 1 1 GLN L 79 GLU L 83 5 5 HELIX 2 2 SER L 121 GLN L 126 1 6 HELIX 3 3 THR L 181 LYS L 186 1 6 HELIX 4 4 ARG H 83 THR H 87 5 5 SHEET 1 A 5 SER L 9 VAL L 11 0 SHEET 2 A 5 THR L 102 VAL L 104 1 O LYS L 103 N VAL L 11 SHEET 3 A 5 ALA L 84 THR L 90 -1 N TYR L 86 O THR L 102 SHEET 4 A 5 VAL L 33 GLN L 38 -1 N SER L 34 O GLY L 89 SHEET 5 A 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 B 3 VAL L 19 SER L 24 0 SHEET 2 B 3 SER L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 B 3 PHE L 62 LYS L 66 -1 N SER L 65 O THR L 72 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 C 4 TYR L 172 LEU L 180 -1 O LEU L 180 N ALA L 130 SHEET 4 C 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 172 LEU L 180 -1 O LEU L 180 N ALA L 130 SHEET 4 D 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 E 4 SER L 153 VAL L 155 0 SHEET 2 E 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 E 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 E 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 F 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 G 6 VAL H 11 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 LYS H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 G 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 LYS H 57 TYR H 59 -1 O TYR H 58 N VAL H 50 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 H 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 H 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 I 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 I 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 J 2 TYR H 194 ASN H 197 0 SHEET 2 J 2 ASP H 208 VAL H 211 -1 O VAL H 211 N TYR H 194 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 2 CYS L 134 CYS L 193 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.03 CISPEP 1 TYR L 140 PRO L 141 0 -2.19 CISPEP 2 PRO H 41 GLY H 42 0 -1.90 CISPEP 3 GLY H 100V VAL H 100W 0 -1.78 CISPEP 4 GLY H 133 GLY H 134 0 4.02 CISPEP 5 PHE H 146 PRO H 147 0 5.81 CRYST1 85.456 81.194 69.193 90.00 123.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011702 0.000000 0.007880 0.00000 SCALE2 0.000000 0.012316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017423 0.00000