HEADER ISOMERASE, CHAPERONE 10-JAN-14 4ODO TITLE STRUCTURE OF SLYD FROM THERMUS THERMOPHILUS IN COMPLEX WITH FK506 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TTSLYD; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 274; SOURCE 5 GENE: TTHA0346; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FKBP DOMAIN, IF DOMAIN, CHAPERONE, PEPTIDYL-PROLYL ISOMERASE, PPIASE, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.QUISTGAARD,C.LOW,P.NORDLUND REVDAT 3 28-FEB-24 4ODO 1 REMARK SEQADV LINK REVDAT 2 04-OCT-17 4ODO 1 JRNL REVDAT 1 14-JAN-15 4ODO 0 JRNL AUTH E.M.QUISTGAARD,U.WEININGER,Y.URAL-BLIMKE,K.MODIG,P.NORDLUND, JRNL AUTH 2 M.AKKE,C.LOW JRNL TITL MOLECULAR INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYTIC JRNL TITL 2 MECHANISM OF THE CHAPERONE AND FKBP PEPTIDYL-PROLYL JRNL TITL 3 ISOMERASE SLYD. JRNL REF BMC BIOL. V. 14 82 2016 JRNL REFN ESSN 1741-7007 JRNL PMID 27664121 JRNL DOI 10.1186/S12915-016-0300-3 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 63367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8139 - 3.8510 0.97 4449 151 0.1537 0.1594 REMARK 3 2 3.8510 - 3.0579 0.97 4459 153 0.1527 0.1614 REMARK 3 3 3.0579 - 2.6717 0.97 4506 142 0.1815 0.2042 REMARK 3 4 2.6717 - 2.4276 0.98 4468 150 0.1909 0.2329 REMARK 3 5 2.4276 - 2.2537 0.97 4483 145 0.1885 0.2111 REMARK 3 6 2.2537 - 2.1209 0.97 4442 135 0.1846 0.2603 REMARK 3 7 2.1209 - 2.0147 0.97 4481 129 0.1816 0.2213 REMARK 3 8 2.0147 - 1.9270 0.96 4394 135 0.1962 0.2303 REMARK 3 9 1.9270 - 1.8528 0.95 4373 136 0.2033 0.2262 REMARK 3 10 1.8528 - 1.7889 0.95 4370 135 0.2059 0.2587 REMARK 3 11 1.7889 - 1.7330 0.94 4340 133 0.2220 0.2403 REMARK 3 12 1.7330 - 1.6835 0.94 4325 133 0.2489 0.2941 REMARK 3 13 1.6835 - 1.6391 0.94 4330 137 0.2814 0.3329 REMARK 3 14 1.6391 - 1.5992 0.87 4016 117 0.3016 0.3800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3869 REMARK 3 ANGLE : 0.899 5261 REMARK 3 CHIRALITY : 0.036 583 REMARK 3 PLANARITY : 0.004 694 REMARK 3 DIHEDRAL : 17.663 1443 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 31.1687 49.3727 52.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.1308 REMARK 3 T33: 0.1310 T12: -0.0048 REMARK 3 T13: -0.0224 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.5875 L22: 0.3879 REMARK 3 L33: 0.3252 L12: -0.1726 REMARK 3 L13: -0.6940 L23: 0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.0238 S13: 0.0038 REMARK 3 S21: 0.0588 S22: 0.0219 S23: 0.0044 REMARK 3 S31: 0.0377 S32: 0.0233 S33: 0.0212 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 46.2502 28.4849 14.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1448 REMARK 3 T33: 0.1534 T12: -0.0127 REMARK 3 T13: 0.0099 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1446 L22: 0.6436 REMARK 3 L33: 2.0627 L12: 0.0175 REMARK 3 L13: 0.3257 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.0792 S13: 0.0261 REMARK 3 S21: 0.0148 S22: 0.0174 S23: -0.0182 REMARK 3 S31: 0.0648 S32: 0.0065 S33: -0.0881 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 27.5306 46.6579 26.8359 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.3933 REMARK 3 T33: 0.2437 T12: 0.0795 REMARK 3 T13: -0.0537 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: -0.1569 L22: 2.2455 REMARK 3 L33: 2.7324 L12: 0.1122 REMARK 3 L13: -0.2244 L23: 2.7088 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.0849 S13: -0.0264 REMARK 3 S21: -0.2718 S22: -0.5120 S23: 0.2694 REMARK 3 S31: -0.4026 S32: -0.5864 S33: 0.2629 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PDB ENTRY 3LUO REMARK 4 REMARK 4 4ODO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 27.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 14.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56800 REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M BIS-TRIS, PH 5.5, REMARK 280 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 336 O HOH A 337 2.09 REMARK 500 O ASP C 125 O HOH C 391 2.09 REMARK 500 O HOH B 345 O HOH B 497 2.12 REMARK 500 O HOH A 526 O HOH A 527 2.13 REMARK 500 O HOH A 492 O HOH A 532 2.13 REMARK 500 OE2 GLU A 41 O HOH A 310 2.13 REMARK 500 O HOH C 394 O HOH C 446 2.15 REMARK 500 ND1 HIS C 153 O HOH C 445 2.15 REMARK 500 O HOH A 522 O HOH A 523 2.18 REMARK 500 O HOH A 336 O HOH A 451 2.19 REMARK 500 O HOH C 381 O HOH C 385 2.19 REMARK 500 O HOH A 346 O HOH A 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 129 O HOH A 421 1644 2.18 REMARK 500 O HOH A 532 O HOH C 381 1466 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -109.62 -114.08 REMARK 500 ALA B 62 -110.79 -123.40 REMARK 500 HIS B 149 57.13 33.21 REMARK 500 ALA C 62 -114.88 -127.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE2 REMARK 620 2 HOH A 351 O 86.4 REMARK 620 3 HOH A 377 O 84.1 91.4 REMARK 620 4 HOH B 310 O 95.3 83.0 174.3 REMARK 620 5 HOH B 313 O 86.1 172.3 89.4 96.2 REMARK 620 6 HOH B 366 O 175.9 92.9 91.9 88.6 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 HOH A 347 O 82.1 REMARK 620 3 HOH A 353 O 92.3 86.3 REMARK 620 4 HOH A 361 O 176.4 97.7 91.3 REMARK 620 5 HOH A 366 O 93.4 94.4 174.2 83.0 REMARK 620 6 HOH A 370 O 88.0 169.9 92.9 92.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 333 O REMARK 620 2 HOH A 443 O 83.9 REMARK 620 3 HOH A 478 O 106.5 165.9 REMARK 620 4 HOH A 479 O 92.3 96.4 74.1 REMARK 620 5 HOH A 480 O 102.7 77.7 108.4 163.1 REMARK 620 6 HOH A 519 O 172.5 88.7 81.0 89.8 74.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 385 O REMARK 620 2 SER C 77 O 120.9 REMARK 620 3 HOH C 319 O 89.1 98.6 REMARK 620 4 HOH C 381 O 89.7 149.0 85.8 REMARK 620 5 HOH C 385 O 143.9 95.1 88.6 54.2 REMARK 620 6 HOH C 419 O 93.1 92.4 165.7 80.1 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 C 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ODK RELATED DB: PDB REMARK 900 RELATED ID: 4ODL RELATED DB: PDB REMARK 900 RELATED ID: 4ODM RELATED DB: PDB REMARK 900 RELATED ID: 4ODN RELATED DB: PDB REMARK 900 RELATED ID: 4ODP RELATED DB: PDB REMARK 900 RELATED ID: 4ODQ RELATED DB: PDB REMARK 900 RELATED ID: 4ODR RELATED DB: PDB DBREF 4ODO A 1 149 UNP Q5SLE7 Q5SLE7_THET8 1 149 DBREF 4ODO B 1 149 UNP Q5SLE7 Q5SLE7_THET8 1 149 DBREF 4ODO C 1 149 UNP Q5SLE7 Q5SLE7_THET8 1 149 SEQADV 4ODO PRO A 150 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO SER A 151 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO GLY A 152 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 153 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 154 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 155 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 156 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 157 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS A 158 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO PRO B 150 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO SER B 151 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO GLY B 152 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 153 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 154 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 155 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 156 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 157 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS B 158 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO PRO C 150 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO SER C 151 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO GLY C 152 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 153 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 154 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 155 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 156 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 157 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODO HIS C 158 UNP Q5SLE7 EXPRESSION TAG SEQRES 1 A 158 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 A 158 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 A 158 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 A 158 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 A 158 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY PRO SEQRES 6 A 158 HIS ASP PRO GLU GLY VAL GLN VAL VAL PRO LEU SER ALA SEQRES 7 A 158 PHE PRO GLU ASP ALA GLU VAL VAL PRO GLY ALA GLN PHE SEQRES 8 A 158 TYR ALA GLN ASP MET GLU GLY ASN PRO MET PRO LEU THR SEQRES 9 A 158 VAL VAL ALA VAL GLU GLY GLU GLU VAL THR VAL ASP PHE SEQRES 10 A 158 ASN HIS PRO LEU ALA GLY LYS ASP LEU ASP PHE GLN VAL SEQRES 11 A 158 GLU VAL VAL LYS VAL ARG GLU ALA THR PRO GLU GLU LEU SEQRES 12 A 158 LEU HIS GLY HIS ALA HIS PRO SER GLY HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 B 158 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 B 158 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 B 158 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 B 158 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 B 158 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY PRO SEQRES 6 B 158 HIS ASP PRO GLU GLY VAL GLN VAL VAL PRO LEU SER ALA SEQRES 7 B 158 PHE PRO GLU ASP ALA GLU VAL VAL PRO GLY ALA GLN PHE SEQRES 8 B 158 TYR ALA GLN ASP MET GLU GLY ASN PRO MET PRO LEU THR SEQRES 9 B 158 VAL VAL ALA VAL GLU GLY GLU GLU VAL THR VAL ASP PHE SEQRES 10 B 158 ASN HIS PRO LEU ALA GLY LYS ASP LEU ASP PHE GLN VAL SEQRES 11 B 158 GLU VAL VAL LYS VAL ARG GLU ALA THR PRO GLU GLU LEU SEQRES 12 B 158 LEU HIS GLY HIS ALA HIS PRO SER GLY HIS HIS HIS HIS SEQRES 13 B 158 HIS HIS SEQRES 1 C 158 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 C 158 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 C 158 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 C 158 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 C 158 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY PRO SEQRES 6 C 158 HIS ASP PRO GLU GLY VAL GLN VAL VAL PRO LEU SER ALA SEQRES 7 C 158 PHE PRO GLU ASP ALA GLU VAL VAL PRO GLY ALA GLN PHE SEQRES 8 C 158 TYR ALA GLN ASP MET GLU GLY ASN PRO MET PRO LEU THR SEQRES 9 C 158 VAL VAL ALA VAL GLU GLY GLU GLU VAL THR VAL ASP PHE SEQRES 10 C 158 ASN HIS PRO LEU ALA GLY LYS ASP LEU ASP PHE GLN VAL SEQRES 11 C 158 GLU VAL VAL LYS VAL ARG GLU ALA THR PRO GLU GLU LEU SEQRES 12 C 158 LEU HIS GLY HIS ALA HIS PRO SER GLY HIS HIS HIS HIS SEQRES 13 C 158 HIS HIS HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET CL A 204 1 HET FK5 A 205 57 HET CL B 201 1 HET BTB B 202 14 HET FK5 B 203 57 HET MG C 201 1 HET CL C 202 1 HET GOL C 203 6 HET FK5 C 204 57 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM FK5 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN FK5 K506 HETSYN BTB BIS-TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MG 4(MG 2+) FORMUL 7 CL 3(CL 1-) FORMUL 8 FK5 3(C44 H69 N O12) FORMUL 10 BTB C8 H19 N O5 FORMUL 14 GOL C3 H8 O3 FORMUL 16 HOH *629(H2 O) HELIX 1 1 ILE A 37 GLU A 45 1 9 HELIX 2 2 PRO A 58 ALA A 62 5 5 HELIX 3 3 ASP A 67 GLU A 69 5 3 HELIX 4 4 SER A 77 PHE A 79 5 3 HELIX 5 5 THR A 139 GLY A 146 1 8 HELIX 6 6 ILE B 37 GLU B 45 1 9 HELIX 7 7 PRO B 58 ALA B 62 5 5 HELIX 8 8 ASP B 67 GLU B 69 5 3 HELIX 9 9 SER B 77 PHE B 79 5 3 HELIX 10 10 THR B 139 GLY B 146 1 8 HELIX 11 11 ILE C 37 GLU C 45 1 9 HELIX 12 12 PRO C 58 ALA C 62 5 5 HELIX 13 13 ASP C 67 GLU C 69 5 3 HELIX 14 14 SER C 77 PHE C 79 5 3 HELIX 15 15 THR C 139 GLY C 146 1 8 SHEET 1 A 4 GLU A 20 LEU A 30 0 SHEET 2 A 4 LYS A 7 VAL A 17 -1 N LEU A 15 O LEU A 22 SHEET 3 A 4 LEU A 126 GLU A 137 -1 O LYS A 134 N THR A 10 SHEET 4 A 4 ALA A 52 VAL A 57 -1 N VAL A 57 O LEU A 126 SHEET 1 B 4 VAL A 71 PRO A 75 0 SHEET 2 B 4 GLU A 112 ASP A 116 -1 O VAL A 113 N VAL A 74 SHEET 3 B 4 LEU A 103 GLU A 109 -1 N VAL A 106 O THR A 114 SHEET 4 B 4 GLN A 90 PHE A 91 -1 N PHE A 91 O LEU A 103 SHEET 1 C 4 GLU B 20 LEU B 30 0 SHEET 2 C 4 LYS B 7 VAL B 17 -1 N LEU B 15 O ASP B 23 SHEET 3 C 4 LEU B 126 GLU B 137 -1 O ASP B 127 N GLN B 16 SHEET 4 C 4 ALA B 52 VAL B 57 -1 N VAL B 57 O LEU B 126 SHEET 1 D 4 VAL B 71 PRO B 75 0 SHEET 2 D 4 GLU B 112 ASP B 116 -1 O VAL B 115 N GLN B 72 SHEET 3 D 4 PRO B 100 GLU B 109 -1 N VAL B 106 O THR B 114 SHEET 4 D 4 GLN B 90 GLN B 94 -1 N ALA B 93 O MET B 101 SHEET 1 E 4 GLU C 20 LEU C 30 0 SHEET 2 E 4 LYS C 7 VAL C 17 -1 N VAL C 17 O GLU C 20 SHEET 3 E 4 LEU C 126 GLU C 137 -1 O LYS C 134 N THR C 10 SHEET 4 E 4 ALA C 52 VAL C 57 -1 N VAL C 57 O LEU C 126 SHEET 1 F 4 VAL C 71 PRO C 75 0 SHEET 2 F 4 GLU C 112 ASP C 116 -1 O VAL C 113 N VAL C 74 SHEET 3 F 4 PRO C 100 GLU C 109 -1 N VAL C 106 O THR C 114 SHEET 4 F 4 GLN C 90 GLN C 94 -1 N ALA C 93 O MET C 101 LINK OE2 GLU A 112 MG MG A 201 1555 1555 2.01 LINK MG MG A 201 O HOH A 351 1555 1555 2.06 LINK MG MG A 201 O HOH A 377 1555 1555 2.09 LINK MG MG A 201 O HOH B 310 1555 1555 2.08 LINK MG MG A 201 O HOH B 313 1555 1555 2.08 LINK MG MG A 201 O HOH B 366 1555 1555 2.05 LINK MG MG A 202 O HOH A 301 1555 1555 2.08 LINK MG MG A 202 O HOH A 347 1555 1555 2.05 LINK MG MG A 202 O HOH A 353 1555 1555 2.10 LINK MG MG A 202 O HOH A 361 1555 1555 2.09 LINK MG MG A 202 O HOH A 366 1555 1555 2.06 LINK MG MG A 202 O HOH A 370 1555 1555 2.08 LINK MG MG A 203 O HOH A 333 1555 1555 2.09 LINK MG MG A 203 O HOH A 443 1555 1555 2.57 LINK MG MG A 203 O HOH A 478 1555 1555 2.07 LINK MG MG A 203 O HOH A 479 1555 1555 2.07 LINK MG MG A 203 O HOH A 480 1555 1555 2.08 LINK MG MG A 203 O HOH A 519 1555 1555 2.36 LINK O HOH B 385 MG MG C 201 1555 1555 2.49 LINK O SER C 77 MG MG C 201 1555 1555 2.07 LINK MG MG C 201 O HOH C 319 1555 1555 2.06 LINK MG MG C 201 O HOH C 381 1555 1555 2.62 LINK MG MG C 201 O HOH C 385 1555 1555 2.07 LINK MG MG C 201 O HOH C 419 1555 1555 2.04 SITE 1 AC1 6 GLU A 112 HOH A 351 HOH A 377 HOH B 310 SITE 2 AC1 6 HOH B 313 HOH B 366 SITE 1 AC2 6 HOH A 301 HOH A 347 HOH A 353 HOH A 361 SITE 2 AC2 6 HOH A 366 HOH A 370 SITE 1 AC3 6 HOH A 333 HOH A 443 HOH A 478 HOH A 479 SITE 2 AC3 6 HOH A 480 HOH A 519 SITE 1 AC4 5 TYR A 29 LEU A 30 ASN A 35 HIS A 147 SITE 2 AC4 5 ALA A 148 SITE 1 AC5 15 TYR A 13 LEU A 15 ASP A 23 ASN A 35 SITE 2 AC5 15 LEU A 36 ILE A 37 LEU A 40 ALA A 62 SITE 3 AC5 15 TYR A 63 LEU A 121 HOH A 398 HOH A 426 SITE 4 AC5 15 HOH A 432 ARG C 12 GLU C 26 SITE 1 AC6 5 TYR B 29 LEU B 30 ASN B 35 HIS B 147 SITE 2 AC6 5 ALA B 148 SITE 1 AC7 10 ASN B 35 HIS B 147 FK5 B 203 HOH B 368 SITE 2 AC7 10 HOH B 386 HOH B 426 GLN C 72 ALA C 93 SITE 3 AC7 10 GLN C 94 PHE C 117 SITE 1 AC8 22 TYR B 13 LEU B 15 ASP B 23 ASN B 35 SITE 2 AC8 22 LEU B 36 ILE B 37 LEU B 40 ALA B 62 SITE 3 AC8 22 TYR B 63 LEU B 121 PHE B 128 BTB B 202 SITE 4 AC8 22 HOH B 341 HOH B 396 HOH B 434 HOH B 444 SITE 5 AC8 22 HOH B 493 ALA C 78 ASP C 95 GLY C 98 SITE 6 AC8 22 GOL C 203 HOH C 304 SITE 1 AC9 6 HOH B 385 SER C 77 HOH C 319 HOH C 381 SITE 2 AC9 6 HOH C 385 HOH C 419 SITE 1 BC1 5 TYR C 29 LEU C 30 ASN C 35 HIS C 147 SITE 2 BC1 5 ALA C 148 SITE 1 BC2 10 FK5 B 203 ALA C 78 PHE C 79 PRO C 80 SITE 2 BC2 10 TYR C 92 ALA C 93 HOH C 304 HOH C 333 SITE 3 BC2 10 HOH C 353 HOH C 400 SITE 1 BC3 15 TYR A 92 GLN A 94 TYR C 13 LEU C 15 SITE 2 BC3 15 ASP C 23 ASN C 35 LEU C 36 ILE C 37 SITE 3 BC3 15 LEU C 40 ALA C 62 TYR C 63 PHE C 128 SITE 4 BC3 15 HOH C 354 HOH C 407 HOH C 436 CRYST1 48.710 50.210 57.670 85.74 68.92 80.12 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020530 -0.003576 -0.007865 0.00000 SCALE2 0.000000 0.020216 -0.000276 0.00000 SCALE3 0.000000 0.000000 0.018585 0.00000