HEADER ISOMERASE, CHAPERONE 10-JAN-14 4ODQ TITLE STRUCTURE OF SLYD DELTA-IF FROM THERMUS THERMOPHILUS IN COMPLEX WITH TITLE 2 S3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD, PEPTIDYL-PROLYL COMPND 3 CIS-TRANS ISOMERASE FKBP1A CHIMERA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SEE REMARK 999; COMPND 6 SYNONYM: TTSLYD, PPIASE FKBP1A, 12 KDA FK506-BINDING PROTEIN, 12 KDA COMPND 7 FKBP, FKBP-12, CALSTABIN-1, FK506-BINDING PROTEIN 1A, FKBP-1A, COMPND 8 IMMUNOPHILIN FKBP12, ROTAMASE; COMPND 9 EC: 5.2.1.8; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: 30S RIBOSOMAL PROTEIN S3; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: S3 PEPTIDE (UNP RESIDUES 11-25); COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: BACTERIA, HUMAN; SOURCE 4 ORGANISM_TAXID: 274, 9606; SOURCE 5 GENE: TTHA0346, FKBP1, FKBP12, FKBP1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333 KEYWDS FKBP DOMAIN, CHAPERONE, PEPTIDYL-PROLYL ISOMERASE, PPIASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.QUISTGAARD,C.LOW,P.NORDLUND REVDAT 4 28-FEB-24 4ODQ 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 4ODQ 1 JRNL REVDAT 2 26-JUL-17 4ODQ 1 SOURCE REMARK REVDAT 1 14-JAN-15 4ODQ 0 JRNL AUTH E.M.QUISTGAARD,U.WEININGER,Y.URAL-BLIMKE,K.MODIG,P.NORDLUND, JRNL AUTH 2 M.AKKE,C.LOW JRNL TITL MOLECULAR INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYTIC JRNL TITL 2 MECHANISM OF THE CHAPERONE AND FKBP PEPTIDYL-PROLYL JRNL TITL 3 ISOMERASE SLYD. JRNL REF BMC BIOL. V. 14 82 2016 JRNL REFN ESSN 1741-7007 JRNL PMID 27664121 JRNL DOI 10.1186/S12915-016-0300-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.920 REMARK 3 FREE R VALUE TEST SET COUNT : 391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2027 - 3.4196 1.00 3461 125 0.1884 0.2097 REMARK 3 2 3.4196 - 2.7144 1.00 3447 136 0.1794 0.1869 REMARK 3 3 2.7144 - 2.3714 1.00 3408 166 0.2058 0.2247 REMARK 3 4 2.3714 - 2.1546 1.00 3398 167 0.2069 0.2156 REMARK 3 5 2.1546 - 2.0002 1.00 3473 108 0.2266 0.2961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 944 REMARK 3 ANGLE : 0.899 1302 REMARK 3 CHIRALITY : 0.033 130 REMARK 3 PLANARITY : 0.004 166 REMARK 3 DIHEDRAL : 14.213 331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -14.2706 -8.0843 15.6113 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1647 REMARK 3 T33: 0.1966 T12: -0.0344 REMARK 3 T13: 0.0153 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.2862 L22: 2.4020 REMARK 3 L33: 4.3206 L12: -0.4456 REMARK 3 L13: -0.2662 L23: 0.3713 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.0110 S13: 0.1540 REMARK 3 S21: -0.0231 S22: -0.0013 S23: -0.2148 REMARK 3 S31: -0.4650 S32: 0.1600 S33: 0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -13.7142 -1.0328 9.6911 REMARK 3 T TENSOR REMARK 3 T11: 0.5191 T22: 0.4092 REMARK 3 T33: 0.4033 T12: 0.0632 REMARK 3 T13: 0.1163 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 3.5299 L22: 9.2178 REMARK 3 L33: 2.6048 L12: 1.4038 REMARK 3 L13: -1.8615 L23: -0.8343 REMARK 3 S TENSOR REMARK 3 S11: -0.2062 S12: 0.8285 S13: 0.2710 REMARK 3 S21: -1.0834 S22: -0.5392 S23: -0.1694 REMARK 3 S31: -0.5694 S32: 0.1461 S33: 0.6164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PDB ENTRY 3LUO REMARK 4 REMARK 4 4ODQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 23.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77400 REMARK 200 FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG6000, 0.1 M TRIS-HCL, PH 8.0, REMARK 280 0.2 M CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 46.78000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 46.78000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 46.78000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 46.78000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 46.78000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 46.78000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 46.78000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 46.78000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 46.78000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 70.17000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.39000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 70.17000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 70.17000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.17000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 23.39000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 70.17000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 23.39000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 70.17000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 23.39000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 70.17000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 23.39000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 23.39000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 70.17000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 23.39000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 70.17000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 70.17000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 70.17000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 23.39000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 70.17000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 70.17000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 23.39000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 23.39000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 23.39000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 70.17000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 23.39000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 70.17000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 23.39000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 70.17000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 70.17000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 70.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 369 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 391 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 69 REMARK 465 GLY A 70 REMARK 465 ILE A 71 REMARK 465 ILE A 72 REMARK 465 ARG B 11 REMARK 465 LEU B 12 REMARK 465 ASN B 19 REMARK 465 SER B 20 REMARK 465 THR B 21 REMARK 465 TRP B 22 REMARK 465 PHE B 23 REMARK 465 ALA B 24 REMARK 465 ASN B 25 REMARK 465 NH2 B 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 402 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -107.38 -142.98 REMARK 500 HIS A 106 97.04 -163.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 16 OE1 REMARK 620 2 HOH A 322 O 70.8 REMARK 620 3 HOH A 328 O 169.6 119.3 REMARK 620 4 HOH A 329 O 92.9 76.7 87.4 REMARK 620 5 HOH A 331 O 83.4 141.4 86.5 76.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 O REMARK 620 2 ASN A 35 OD1 74.4 REMARK 620 3 HOH A 305 O 76.6 150.7 REMARK 620 4 HOH A 314 O 96.2 91.1 87.6 REMARK 620 5 HOH A 336 O 147.9 137.2 72.1 89.4 REMARK 620 6 HOH A 356 O 94.2 94.1 92.3 169.3 80.4 REMARK 620 7 HOH A 362 O 147.2 73.1 136.2 88.9 64.2 83.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 49 OE2 REMARK 620 2 GLU A 49 OE1 53.4 REMARK 620 3 HOH A 313 O 91.5 144.9 REMARK 620 4 HOH A 326 O 93.4 82.5 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 52 O REMARK 620 2 HOH A 347 O 74.2 REMARK 620 3 HOH A 352 O 94.7 168.6 REMARK 620 4 HOH A 368 O 76.1 78.5 101.6 REMARK 620 5 HOH A 370 O 158.7 88.2 103.2 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 206 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 ND1 REMARK 620 2 HIS A 99 NE2 96.0 REMARK 620 3 HIS A 101 NE2 85.9 94.0 REMARK 620 4 HIS A 106 NE2 175.6 88.1 95.3 REMARK 620 5 HIS A 108 NE2 90.4 173.6 86.2 85.5 REMARK 620 6 HIS A 110 NE2 88.6 85.8 174.5 90.2 94.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ODK RELATED DB: PDB REMARK 900 RELATED ID: 4ODL RELATED DB: PDB REMARK 900 RELATED ID: 4ODM RELATED DB: PDB REMARK 900 RELATED ID: 4ODN RELATED DB: PDB REMARK 900 RELATED ID: 4ODO RELATED DB: PDB REMARK 900 RELATED ID: 4ODP RELATED DB: PDB REMARK 900 RELATED ID: 4ODR RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN SLYD DELTA-IF IS A CHIMERA IN WHICH THE IF DOMAIN OF SYLD REMARK 999 (UNP RESIDUES 65-125) HAS BEEN REPLACED BY THE FLAP LOOP OF FKBP12 REMARK 999 (UNP RESIDUES 85-97). DBREF 4ODQ A 1 64 UNP Q5SLE7 Q5SLE7_THET8 1 64 DBREF 4ODQ A 65 77 UNP P62942 FKB1A_HUMAN 85 97 DBREF 4ODQ A 78 101 UNP Q5SLE7 Q5SLE7_THET8 126 149 DBREF 4ODQ B 11 25 UNP P0A7V3 RS3_ECOLI 11 25 SEQADV 4ODQ PRO A 102 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ SER A 103 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ GLY A 104 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 105 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 106 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 107 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 108 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 109 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ HIS A 110 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODQ NH2 B 26 UNP P0A7V3 AMIDATION SEQRES 1 A 110 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 A 110 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 A 110 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 A 110 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 A 110 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY ALA SEQRES 6 A 110 THR GLY HIS PRO GLY ILE ILE PRO PRO HIS ALA THR LEU SEQRES 7 A 110 ASP PHE GLN VAL GLU VAL VAL LYS VAL ARG GLU ALA THR SEQRES 8 A 110 PRO GLU GLU LEU LEU HIS GLY HIS ALA HIS PRO SER GLY SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS SEQRES 1 B 16 ARG LEU GLY ILE VAL LYS PRO TRP ASN SER THR TRP PHE SEQRES 2 B 16 ALA ASN NH2 HET CL A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET NI A 206 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION FORMUL 3 CL CL 1- FORMUL 4 CA 4(CA 2+) FORMUL 8 NI NI 2+ FORMUL 9 HOH *107(H2 O) HELIX 1 1 ILE A 37 GLU A 45 1 9 HELIX 2 2 PRO A 58 ALA A 62 5 5 HELIX 3 3 THR A 91 GLY A 98 1 8 SHEET 1 A 4 GLU A 20 LEU A 30 0 SHEET 2 A 4 LYS A 7 VAL A 17 -1 N LEU A 15 O ASP A 23 SHEET 3 A 4 LEU A 78 GLU A 89 -1 O ASP A 79 N GLN A 16 SHEET 4 A 4 ALA A 52 VAL A 57 -1 N PHE A 53 O VAL A 82 LINK OE1 GLN A 16 CA CA A 205 1555 1555 2.39 LINK O HIS A 33 CA CA A 202 1555 1555 2.25 LINK OD1 ASN A 35 CA CA A 202 1555 1555 2.54 LINK OE2 GLU A 49 CA CA A 203 1555 1555 2.40 LINK OE1 GLU A 49 CA CA A 203 1555 1555 2.46 LINK O ALA A 52 CA CA A 204 1555 1555 2.42 LINK ND1 HIS A 97 NI NI A 206 1555 1555 2.27 LINK NE2 HIS A 99 NI NI A 206 1555 1555 2.20 LINK NE2 HIS A 101 NI NI A 206 1555 1555 2.13 LINK NE2 HIS A 106 NI NI A 206 24444 1555 2.21 LINK NE2 HIS A 108 NI NI A 206 1555 1555 2.18 LINK NE2 HIS A 110 NI NI A 206 1555 1555 2.19 LINK CA CA A 202 O HOH A 305 1555 1555 2.45 LINK CA CA A 202 O HOH A 314 1555 1555 2.34 LINK CA CA A 202 O HOH A 336 1555 1555 2.44 LINK CA CA A 202 O HOH A 356 1555 1555 2.46 LINK CA CA A 202 O HOH A 362 1555 1555 2.32 LINK CA CA A 203 O HOH A 313 1555 1555 2.47 LINK CA CA A 203 O HOH A 326 1555 1555 2.31 LINK CA CA A 204 O HOH A 347 1555 1555 2.35 LINK CA CA A 204 O HOH A 352 1555 1555 2.36 LINK CA CA A 204 O HOH A 368 1555 1555 2.36 LINK CA CA A 204 O HOH A 370 1555 1555 2.38 LINK CA CA A 205 O HOH A 322 1555 1555 2.39 LINK CA CA A 205 O HOH A 328 1555 1555 2.37 LINK CA CA A 205 O HOH A 329 1555 1555 2.49 LINK CA CA A 205 O HOH A 331 1555 1555 2.42 SITE 1 AC1 6 TYR A 29 LEU A 30 ASN A 35 HIS A 99 SITE 2 AC1 6 ALA A 100 LYS B 16 SITE 1 AC2 7 HIS A 33 ASN A 35 HOH A 305 HOH A 314 SITE 2 AC2 7 HOH A 336 HOH A 356 HOH A 362 SITE 1 AC3 4 GLU A 49 HOH A 313 HOH A 326 HOH A 382 SITE 1 AC4 6 ALA A 52 GLU A 89 HOH A 347 HOH A 352 SITE 2 AC4 6 HOH A 368 HOH A 370 SITE 1 AC5 5 GLN A 16 HOH A 322 HOH A 328 HOH A 329 SITE 2 AC5 5 HOH A 331 SITE 1 AC6 6 HIS A 97 HIS A 99 HIS A 101 HIS A 106 SITE 2 AC6 6 HIS A 108 HIS A 110 CRYST1 93.560 93.560 93.560 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010688 0.00000