HEADER TRANSPORT PROTEIN 14-JAN-14 4OFJ TITLE CRYSTAL STRUCTURE OF NIKA FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH TITLE 2 NI(L-HIS)2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACYTOPLASMIC NICKEL-BINDING PROTEIN SANIKA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SANIKA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: SUBSP. AUREUS COL; SOURCE 5 GENE: SACOL0217; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXTRACYTOPLASMIC, NICKEL IMPORT, METAL TRANSPORT, ABC-TYPE IMPORTER, KEYWDS 2 EXTRACYTOPLASMIC NICKEL-BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.LEBRETTE,C.CAVAZZA REVDAT 3 20-SEP-23 4OFJ 1 REMARK LINK REVDAT 2 22-APR-15 4OFJ 1 JRNL REVDAT 1 04-FEB-15 4OFJ 0 JRNL AUTH H.LEBRETTE,E.BOREZEE-DURANT,L.MARTIN,P.RICHAUD,E.BOERI ERBA, JRNL AUTH 2 C.CAVAZZA JRNL TITL NOVEL INSIGHTS INTO NICKEL IMPORT IN STAPHYLOCOCCUS AUREUS: JRNL TITL 2 THE POSITIVE ROLE OF FREE HISTIDINE AND STRUCTURAL JRNL TITL 3 CHARACTERIZATION OF A NEW THIAZOLIDINE-TYPE NICKEL CHELATOR. JRNL REF METALLOMICS V. 7 613 2015 JRNL REFN ISSN 1756-5901 JRNL PMID 25611161 JRNL DOI 10.1039/C4MT00295D REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7057 - 4.5349 0.99 2900 153 0.1603 0.1984 REMARK 3 2 4.5349 - 3.6000 1.00 2776 146 0.1270 0.1412 REMARK 3 3 3.6000 - 3.1450 1.00 2738 144 0.1335 0.1690 REMARK 3 4 3.1450 - 2.8575 1.00 2732 144 0.1388 0.1597 REMARK 3 5 2.8575 - 2.6527 1.00 2732 144 0.1457 0.2006 REMARK 3 6 2.6527 - 2.4963 1.00 2695 142 0.1492 0.1959 REMARK 3 7 2.4963 - 2.3713 1.00 2711 142 0.1488 0.1777 REMARK 3 8 2.3713 - 2.2681 1.00 2690 142 0.1395 0.1794 REMARK 3 9 2.2681 - 2.1808 1.00 2686 141 0.1397 0.1743 REMARK 3 10 2.1808 - 2.1055 1.00 2674 141 0.1386 0.1899 REMARK 3 11 2.1055 - 2.0397 1.00 2679 141 0.1505 0.1791 REMARK 3 12 2.0397 - 1.9814 1.00 2680 141 0.1483 0.2033 REMARK 3 13 1.9814 - 1.9292 0.99 2645 139 0.1469 0.1987 REMARK 3 14 1.9292 - 1.8822 0.99 2661 141 0.1498 0.2161 REMARK 3 15 1.8822 - 1.8394 1.00 2686 141 0.1597 0.2004 REMARK 3 16 1.8394 - 1.8002 0.99 2640 139 0.1680 0.2321 REMARK 3 17 1.8002 - 1.7642 0.99 2644 139 0.1938 0.2257 REMARK 3 18 1.7642 - 1.7309 0.99 2670 141 0.2398 0.2781 REMARK 3 19 1.7309 - 1.7000 0.99 2649 139 0.2733 0.3227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3977 REMARK 3 ANGLE : 1.564 5355 REMARK 3 CHIRALITY : 0.128 584 REMARK 3 PLANARITY : 0.008 685 REMARK 3 DIHEDRAL : 15.953 1540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9096 43.3975 11.9214 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.1169 REMARK 3 T33: 0.1162 T12: 0.0077 REMARK 3 T13: 0.0244 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.7958 L22: 2.3666 REMARK 3 L33: 2.5352 L12: -0.3292 REMARK 3 L13: -0.3269 L23: 1.3837 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0601 S13: -0.0599 REMARK 3 S21: -0.0159 S22: -0.0216 S23: 0.0963 REMARK 3 S31: -0.0287 S32: -0.1130 S33: 0.0400 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4124 57.6416 29.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1598 REMARK 3 T33: 0.0945 T12: 0.0241 REMARK 3 T13: -0.0130 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0273 L22: 3.4146 REMARK 3 L33: 1.4659 L12: 0.0989 REMARK 3 L13: 0.1839 L23: 0.4622 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: -0.0810 S13: 0.0880 REMARK 3 S21: 0.3458 S22: 0.0752 S23: -0.1379 REMARK 3 S31: -0.0446 S32: 0.1513 S33: 0.0059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3607 70.5193 7.7028 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.1091 REMARK 3 T33: 0.1013 T12: -0.0212 REMARK 3 T13: 0.0139 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8906 L22: 1.3181 REMARK 3 L33: 0.9672 L12: -0.3341 REMARK 3 L13: 0.2052 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0391 S13: 0.0837 REMARK 3 S21: -0.0673 S22: -0.0089 S23: -0.0782 REMARK 3 S31: -0.0489 S32: 0.0591 S33: 0.0249 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 17.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 % PEG 3350, 0.1 M HEPES PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 ARG A 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 55.66 -106.61 REMARK 500 LEU A 17 66.43 69.52 REMARK 500 LYS A 20 -97.23 -100.48 REMARK 500 ALA A 51 -70.87 -120.97 REMARK 500 ARG A 165 -55.24 -133.83 REMARK 500 THR A 277 -66.73 -126.45 REMARK 500 ASN A 343 37.56 70.78 REMARK 500 ILE A 374 71.33 -153.35 REMARK 500 LEU A 464 -57.31 -146.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 502 N REMARK 620 2 HIS A 502 ND1 87.2 REMARK 620 3 HIS A 502 OXT 80.7 90.2 REMARK 620 4 HIS A 503 O 95.6 177.2 89.7 REMARK 620 5 HIS A 503 ND1 97.1 92.7 176.3 87.6 REMARK 620 6 HIS A 503 N 176.2 95.2 96.2 82.1 85.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 521 DBREF 4OFJ A 1 473 UNP Q5HJE1 Q5HJE1_STAAC 19 491 SEQRES 1 A 473 CYS GLY SER MET HIS SER SER GLY LYS ASP LEU ASN ILE SEQRES 2 A 473 SER LEU PRO LEU LYS THR LYS SER ILE ALA PRO TYR GLU SEQRES 3 A 473 THR ASP VAL PRO VAL LYS ILE GLY ALA ALA GLU SER LEU SEQRES 4 A 473 PHE LYS THR ASN ASP GLN GLY LYS ILE GLU LYS ALA LEU SEQRES 5 A 473 VAL LYS SER TYR HIS GLN PRO ASN ASP THR THR LEU ASP SEQRES 6 A 473 ILE GLU LEU LYS ASP ASN ILE LYS PHE GLN ASN GLY GLN SEQRES 7 A 473 LYS LEU THR ALA GLU LYS VAL LYS SER SER LEU GLU ASN SEQRES 8 A 473 SER MET LYS LYS SER ASP LEU VAL LYS TYR SER LEU PRO SEQRES 9 A 473 ILE SER SER ILE THR ALA LYS GLY GLN LYS LEU THR ILE SEQRES 10 A 473 LYS THR ASN SER ALA TYR PRO GLU LEU VAL SER GLU LEU SEQRES 11 A 473 ALA ASN PRO PHE MET ALA ILE TYR ASP THR ASP ALA LYS SEQRES 12 A 473 SER ASP VAL ASN GLN THR PRO VAL GLY THR GLY PRO TYR SEQRES 13 A 473 GLN ILE LYS ASP TYR LYS GLN SER ARG LYS ILE SER LEU SEQRES 14 A 473 SER ASN PHE LYS ASP TYR TRP GLN GLY LYS PRO LYS LEU SEQRES 15 A 473 ASP HIS ILE THR VAL THR TYR GLN GLU ASP GLY ASN ASN SEQRES 16 A 473 ARG VAL ARG ASN LEU GLU SER GLN LYS ASP ASP LEU ILE SEQRES 17 A 473 THR ASP VAL PRO VAL ASN LYS VAL GLN ASP ILE GLU ASN SEQRES 18 A 473 ASN GLN ASN LEU LYS VAL SER LYS GLU SER GLY PHE ARG SEQRES 19 A 473 THR SER LEU LEU MET TYR ASN HIS THR ASN LYS LYS MET SEQRES 20 A 473 THR LYS SER VAL ARG GLU ALA LEU ASP HIS ILE ILE ASP SEQRES 21 A 473 ARG GLN GLY ILE ALA ASP HIS ILE TYR GLN GLY TYR ALA SEQRES 22 A 473 LYS PRO ALA THR SER PRO PHE ASN ASP LYS ILE PRO TYR SEQRES 23 A 473 ILE LYS GLU PRO LYS LEU THR LYS GLN ASN ILE GLU GLN SEQRES 24 A 473 ALA LYS MET LEU LEU ALA LYS ASP GLY TYR THR LYS GLU SEQRES 25 A 473 HIS PRO LEU LYS ILE LYS LEU ILE THR TYR ASP GLY ARG SEQRES 26 A 473 PRO GLU LEU SER LYS ILE ALA GLN VAL LEU GLN SER ASP SEQRES 27 A 473 ALA LYS LYS ALA ASN ILE GLU ILE ASP ILE LYS SER VAL SEQRES 28 A 473 ASP ASP ILE GLU GLY TYR LEU LYS ASP ARG SER ALA TRP SEQRES 29 A 473 ASP ALA THR MET TYR SER PHE GLY THR ILE PRO ARG GLY SEQRES 30 A 473 ASP THR GLY TYR PHE PHE ASN GLN ALA TYR LYS LYS ASP SEQRES 31 A 473 GLY ALA ILE ASN LYS GLY ASP TYR ASN ASN SER ASN VAL SEQRES 32 A 473 ASP ASP LEU ILE ASN GLN LEU ASN HIS THR VAL ASP VAL SEQRES 33 A 473 LYS GLU ARG HIS ASN ILE SER ASN ASP ILE ILE LYS LEU SEQRES 34 A 473 SER SER ARG ASP VAL PRO ASN SER TYR ILE ALA TYR ASN SEQRES 35 A 473 ASP GLN ILE VAL ALA ALA ASN SER LYS VAL LYS ASN TYR SEQRES 36 A 473 LYS VAL THR PRO GLU GLY ILE TYR LEU ILE ASP TYR ARG SEQRES 37 A 473 THR THR ILE GLU ARG HET NI A 501 1 HET HIS A 502 11 HET HIS A 503 11 HET EPE A 504 15 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET GOL A 516 6 HET GOL A 517 6 HET GOL A 518 6 HET GOL A 519 6 HET GOL A 520 6 HET GOL A 521 6 HETNAM NI NICKEL (II) ION HETNAM HIS HISTIDINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NI NI 2+ FORMUL 3 HIS 2(C6 H10 N3 O2 1+) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 GOL 17(C3 H8 O3) FORMUL 23 HOH *415(H2 O) HELIX 1 1 ASP A 28 ILE A 33 1 6 HELIX 2 2 THR A 81 SER A 96 1 16 HELIX 3 3 SER A 96 LEU A 103 1 8 HELIX 4 4 GLU A 125 LEU A 130 1 6 HELIX 5 5 ALA A 131 ALA A 136 5 6 HELIX 6 6 ASP A 192 SER A 202 1 11 HELIX 7 7 PRO A 212 ASN A 214 5 3 HELIX 8 8 LYS A 215 ASN A 221 1 7 HELIX 9 9 THR A 248 ILE A 259 1 12 HELIX 10 10 ASP A 260 ILE A 268 1 9 HELIX 11 11 ASN A 296 ASP A 307 1 12 HELIX 12 12 GLU A 327 LYS A 341 1 15 HELIX 13 13 ASP A 353 LYS A 359 1 7 HELIX 14 14 THR A 379 TYR A 387 1 9 HELIX 15 15 ASN A 400 HIS A 412 1 13 HELIX 16 16 ASP A 415 VAL A 434 1 20 SHEET 1 A 7 TYR A 156 LYS A 162 0 SHEET 2 A 7 LYS A 166 ASN A 171 -1 O SER A 168 N LYS A 159 SHEET 3 A 7 HIS A 184 TYR A 189 -1 O ILE A 185 N LEU A 169 SHEET 4 A 7 ASP A 10 LEU A 15 1 N ILE A 13 O THR A 186 SHEET 5 A 7 LEU A 207 ILE A 208 1 O LEU A 207 N SER A 14 SHEET 6 A 7 ASN A 436 ASN A 449 -1 O ALA A 447 N ILE A 208 SHEET 7 A 7 ALA A 273 PRO A 275 -1 N LYS A 274 O TYR A 441 SHEET 1 B10 TYR A 156 LYS A 162 0 SHEET 2 B10 LYS A 166 ASN A 171 -1 O SER A 168 N LYS A 159 SHEET 3 B10 HIS A 184 TYR A 189 -1 O ILE A 185 N LEU A 169 SHEET 4 B10 ASP A 10 LEU A 15 1 N ILE A 13 O THR A 186 SHEET 5 B10 LEU A 207 ILE A 208 1 O LEU A 207 N SER A 14 SHEET 6 B10 ASN A 436 ASN A 449 -1 O ALA A 447 N ILE A 208 SHEET 7 B10 LEU A 225 TYR A 240 -1 N SER A 228 O VAL A 446 SHEET 8 B10 ALA A 366 GLY A 372 -1 O THR A 367 N MET A 239 SHEET 9 B10 LEU A 315 THR A 321 1 N ILE A 320 O MET A 368 SHEET 10 B10 ILE A 344 SER A 350 1 O GLU A 345 N LEU A 315 SHEET 1 C 2 PHE A 40 THR A 42 0 SHEET 2 C 2 ILE A 48 LYS A 50 -1 O GLU A 49 N LYS A 41 SHEET 1 D 4 VAL A 53 ASN A 60 0 SHEET 2 D 4 THR A 63 LEU A 68 -1 O GLU A 67 N LYS A 54 SHEET 3 D 4 LYS A 114 THR A 119 -1 O ILE A 117 N LEU A 64 SHEET 4 D 4 ILE A 105 LYS A 111 -1 N SER A 106 O LYS A 118 SHEET 1 E 2 VAL A 452 LYS A 453 0 SHEET 2 E 2 THR A 470 ILE A 471 -1 O THR A 470 N LYS A 453 LINK NI NI A 501 N HIS A 502 1555 1555 2.07 LINK NI NI A 501 ND1 HIS A 502 1555 1555 2.11 LINK NI NI A 501 OXT HIS A 502 1555 1555 2.12 LINK NI NI A 501 O HIS A 503 1555 1555 2.11 LINK NI NI A 501 ND1 HIS A 503 1555 1555 2.15 LINK NI NI A 501 N HIS A 503 1555 1555 2.19 SITE 1 AC1 2 HIS A 502 HIS A 503 SITE 1 AC2 11 LEU A 17 ARG A 234 TYR A 322 ARG A 325 SITE 2 AC2 11 ILE A 354 GLU A 355 TYR A 369 SER A 370 SITE 3 AC2 11 NI A 501 HIS A 503 HOH A 615 SITE 1 AC3 10 ARG A 234 GLU A 355 SER A 370 PHE A 371 SITE 2 AC3 10 GLY A 372 NI A 501 HIS A 502 HOH A 726 SITE 3 AC3 10 HOH A 887 HOH A 993 SITE 1 AC4 13 ILE A 48 GLU A 49 LYS A 50 TYR A 56 SITE 2 AC4 13 TYR A 101 LYS A 389 ASP A 390 ASP A 404 SITE 3 AC4 13 GOL A 511 HOH A 765 HOH A 982 HOH A1003 SITE 4 AC4 13 HOH A1014 SITE 1 AC5 5 LYS A 54 LYS A 69 ASP A 70 ASN A 402 SITE 2 AC5 5 HOH A 846 SITE 1 AC6 5 THR A 109 ALA A 110 LYS A 114 THR A 116 SITE 2 AC6 5 LYS A 245 SITE 1 AC7 6 GLU A 83 LYS A 86 THR A 109 ALA A 110 SITE 2 AC7 6 LYS A 341 GOL A 510 SITE 1 AC8 6 LYS A 159 LYS A 318 LYS A 349 TYR A 357 SITE 2 AC8 6 HOH A 812 HOH A 870 SITE 1 AC9 9 LYS A 32 LYS A 456 GLY A 461 ILE A 462 SITE 2 AC9 9 TYR A 463 HOH A 627 HOH A 699 HOH A 989 SITE 3 AC9 9 HOH A 991 SITE 1 BC1 9 GLU A 83 ALA A 110 GLN A 295 ASP A 338 SITE 2 BC1 9 LYS A 341 GOL A 507 HOH A 693 HOH A 792 SITE 3 BC1 9 HOH A 947 SITE 1 BC2 6 TYR A 101 ASN A 384 LYS A 388 LYS A 389 SITE 2 BC2 6 EPE A 504 HOH A 941 SITE 1 BC3 6 ASP A 260 GLY A 263 HIS A 267 VAL A 334 SITE 2 BC3 6 HOH A 624 HOH A 672 SITE 1 BC4 6 GLU A 90 MET A 93 ILE A 105 SER A 106 SITE 2 BC4 6 SER A 107 ILE A 108 SITE 1 BC5 10 SER A 55 GLU A 67 ARG A 252 TYR A 398 SITE 2 BC5 10 ASN A 399 ASN A 400 ASP A 433 GOL A 521 SITE 3 BC5 10 HOH A 707 HOH A1011 SITE 1 BC6 9 ASP A 256 ARG A 261 THR A 277 LYS A 291 SITE 2 BC6 9 THR A 293 SER A 431 HOH A 606 HOH A 609 SITE 3 BC6 9 HOH A 621 SITE 1 BC7 9 GLN A 58 ASN A 60 ASP A 61 THR A 63 SITE 2 BC7 9 THR A 119 ALA A 122 TYR A 123 HOH A 675 SITE 3 BC7 9 HOH A 984 SITE 1 BC8 7 ASP A 145 THR A 149 ILE A 348 LYS A 349 SITE 2 BC8 7 SER A 350 HOH A 906 HOH A 950 SITE 1 BC9 6 TYR A 463 HOH A 640 HOH A 762 HOH A 821 SITE 2 BC9 6 HOH A 848 HOH A 862 SITE 1 CC1 4 LYS A 226 LYS A 453 ASN A 454 TYR A 455 SITE 1 CC2 6 LYS A 143 LYS A 349 VAL A 351 ASP A 352 SITE 2 CC2 6 ASP A 353 HOH A 826 SITE 1 CC3 11 LYS A 114 HIS A 242 LYS A 245 MET A 247 SITE 2 CC3 11 THR A 248 LYS A 249 ARG A 252 GOL A 514 SITE 3 CC3 11 HOH A 707 HOH A 881 HOH A 992 CRYST1 61.900 67.720 115.650 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008647 0.00000