HEADER PROTEIN BINDING 15-JAN-14 4OFV TITLE REFINEMENT OF RAGE-DNA COMPLEX IN 3S58 WITHOUT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VC1 FRAGMENT; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IG DOMAIN, RECEPTOR, S100 PROTEINS ADVANCED GLYCATION END PRODUCTS AB KEYWDS 2 OLIGOMERS DNA, MEMBRANE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.YATIME,G.R.ANDERSEN REVDAT 4 20-SEP-23 4OFV 1 SEQADV REVDAT 3 22-NOV-17 4OFV 1 REMARK REVDAT 2 18-JUN-14 4OFV 1 JRNL REVDAT 1 23-APR-14 4OFV 0 JRNL AUTH L.YATIME,G.R.ANDERSEN JRNL TITL THE SPECIFICITY OF DNA RECOGNITION BY THE RAGE RECEPTOR. JRNL REF J.EXP.MED. V. 211 749 2014 JRNL REFN ISSN 0022-1007 JRNL PMID 24778420 JRNL DOI 10.1084/JEM.20132526 REMARK 0 REMARK 0 THE ENTRY PDB ID 4OFV REFLECTS AN ALTERNATIVE MODELING OF X-RAY REMARK 0 DATA OF ENTRY PDB ID 3S58 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.290 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1420 - 5.3051 0.99 2655 127 0.2292 0.2377 REMARK 3 2 5.3051 - 4.2120 1.00 2644 135 0.1887 0.1944 REMARK 3 3 4.2120 - 3.6799 1.00 2634 144 0.2075 0.2259 REMARK 3 4 3.6799 - 3.3436 1.00 2630 136 0.2453 0.3029 REMARK 3 5 3.3436 - 3.1040 0.95 2481 141 0.2690 0.3271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3365 REMARK 3 ANGLE : 0.673 4574 REMARK 3 CHIRALITY : 0.028 494 REMARK 3 PLANARITY : 0.004 606 REMARK 3 DIHEDRAL : 12.916 1292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1235 -7.8076 -8.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.8040 T22: 0.6027 REMARK 3 T33: 0.7009 T12: 0.0559 REMARK 3 T13: 0.0774 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 5.8140 L22: 7.3223 REMARK 3 L33: 5.8654 L12: 1.1068 REMARK 3 L13: -0.7701 L23: 0.5956 REMARK 3 S TENSOR REMARK 3 S11: 0.4338 S12: -0.4865 S13: 0.1533 REMARK 3 S21: 0.6950 S22: -0.3493 S23: -0.3030 REMARK 3 S31: -0.6562 S32: 0.0794 S33: -0.3987 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 23:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8597 -27.6528 -16.2887 REMARK 3 T TENSOR REMARK 3 T11: 0.6115 T22: 0.8229 REMARK 3 T33: 0.7278 T12: -0.0475 REMARK 3 T13: 0.0205 T23: 0.0945 REMARK 3 L TENSOR REMARK 3 L11: 5.0503 L22: 5.4310 REMARK 3 L33: 5.5792 L12: 1.2740 REMARK 3 L13: 0.5982 L23: -0.5839 REMARK 3 S TENSOR REMARK 3 S11: -0.2815 S12: 0.3349 S13: -0.2996 REMARK 3 S21: -0.7759 S22: 0.2552 S23: 0.1343 REMARK 3 S31: 0.2929 S32: -0.3543 S33: 0.0332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 119:233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6745 -11.8842 -46.0145 REMARK 3 T TENSOR REMARK 3 T11: 0.8745 T22: 0.7766 REMARK 3 T33: 0.7733 T12: 0.1882 REMARK 3 T13: 0.2036 T23: 0.0908 REMARK 3 L TENSOR REMARK 3 L11: 2.3467 L22: 4.6673 REMARK 3 L33: 6.3323 L12: -1.1603 REMARK 3 L13: -2.3134 L23: -0.4920 REMARK 3 S TENSOR REMARK 3 S11: 0.6874 S12: 0.2340 S13: 0.2165 REMARK 3 S21: -0.5265 S22: -0.2401 S23: -0.0864 REMARK 3 S31: -0.3610 S32: 0.2157 S33: -0.1519 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 119:234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6343 -39.8128 21.3353 REMARK 3 T TENSOR REMARK 3 T11: 0.6762 T22: 1.0683 REMARK 3 T33: 0.7862 T12: 0.0592 REMARK 3 T13: -0.0300 T23: 0.2142 REMARK 3 L TENSOR REMARK 3 L11: 4.4012 L22: 2.4733 REMARK 3 L33: 6.2759 L12: 0.7636 REMARK 3 L13: 0.7586 L23: -2.6713 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: -0.9474 S13: -0.2448 REMARK 3 S21: 0.0390 S22: 0.4471 S23: 0.2109 REMARK 3 S31: 0.2233 S32: -0.4280 S33: -0.2749 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESID 1:117 REMARK 3 SELECTION : CHAIN B AND RESID 1:117 REMARK 3 ATOM PAIRS NUMBER : 738 REMARK 3 RMSD : 0.010 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESID 119:233 REMARK 3 SELECTION : CHAIN B AND RESID 119:233 REMARK 3 ATOM PAIRS NUMBER : 872 REMARK 3 RMSD : 0.001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : THE ENTRY USES THE SF FILE FROM REMARK 200 ENTRY PDB ID 3S58 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SEE 3S58 REMARK 200 DATA SCALING SOFTWARE : SEE 3S58 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13817 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SEE 3S59 REMARK 200 STARTING MODEL: PDB ENTRY 3S58 REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 3S58 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000, 0.1 M TRIS-HCL, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.79567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.59133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.19350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.98917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.39783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 SER A 241 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 GLU B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 ALA B 239 REMARK 465 ALA B 240 REMARK 465 SER B 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 179 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 55 -164.95 -124.13 REMARK 500 ALA A 60 -113.00 -156.78 REMARK 500 ARG A 104 64.48 -56.27 REMARK 500 ASN A 105 110.34 113.94 REMARK 500 ASN A 167 6.46 59.70 REMARK 500 PRO A 215 51.90 -69.65 REMARK 500 ASP B 22 -19.58 -9.72 REMARK 500 THR B 55 -164.94 -124.18 REMARK 500 ALA B 60 -113.03 -156.80 REMARK 500 ARG B 104 73.31 -57.20 REMARK 500 ASN B 105 114.53 128.89 REMARK 500 ASN B 167 6.40 59.76 REMARK 500 PRO B 215 51.94 -69.70 REMARK 500 PRO B 234 102.03 -59.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 104 ASN A 105 105.67 REMARK 500 ARG B 104 ASN B 105 79.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S58 RELATED DB: PDB REMARK 900 ORIGINAL ENTRY DBREF 4OFV A 23 235 UNP Q15109 RAGE_HUMAN 23 235 DBREF 4OFV B 23 235 UNP Q15109 RAGE_HUMAN 23 235 SEQADV 4OFV VAL A 21 UNP Q15109 EXPRESSION TAG SEQADV 4OFV ASP A 22 UNP Q15109 EXPRESSION TAG SEQADV 4OFV VAL B 21 UNP Q15109 EXPRESSION TAG SEQADV 4OFV ASP B 22 UNP Q15109 EXPRESSION TAG SEQRES 1 A 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 A 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 A 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 A 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 A 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 A 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 A 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 A 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 A 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 A 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 A 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 A 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 A 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 A 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 A 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 A 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 A 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 A 223 ALA SER SEQRES 1 B 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 B 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 B 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 B 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 B 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 B 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 B 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 B 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 B 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 B 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 B 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 B 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 B 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 B 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 B 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 B 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 B 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 B 223 ALA SER HELIX 1 1 GLY A 90 GLU A 94 5 5 HELIX 2 2 GLY B 90 GLU B 94 5 5 SHEET 1 A 5 GLN A 24 ARG A 29 0 SHEET 2 A 5 LYS A 107 TYR A 118 1 O ARG A 114 N GLN A 24 SHEET 3 A 5 GLY A 95 ASN A 103 -1 N PHE A 97 O TYR A 113 SHEET 4 A 5 ARG A 48 ASN A 54 -1 N LYS A 52 O ARG A 98 SHEET 5 A 5 LYS A 62 LEU A 64 -1 O LEU A 64 N TRP A 51 SHEET 1 B 3 LEU A 34 LEU A 36 0 SHEET 2 B 3 LEU A 84 LEU A 86 -1 O LEU A 86 N LEU A 34 SHEET 3 B 3 ARG A 77 VAL A 78 -1 N ARG A 77 O PHE A 85 SHEET 1 C 4 GLU A 125 VAL A 127 0 SHEET 2 C 4 ASN A 139 SER A 149 -1 O THR A 143 N VAL A 127 SHEET 3 C 4 PHE A 186 VAL A 194 -1 O SER A 190 N CYS A 144 SHEET 4 C 4 SER A 172 ARG A 179 -1 N ARG A 178 O THR A 187 SHEET 1 D 2 GLU A 132 THR A 134 0 SHEET 2 D 2 ARG A 228 TRP A 230 1 O TRP A 230 N LEU A 133 SHEET 1 E 4 LYS A 162 PRO A 163 0 SHEET 2 E 4 THR A 154 LEU A 159 -1 N LEU A 159 O LYS A 162 SHEET 3 E 4 PHE A 206 SER A 211 -1 O SER A 207 N HIS A 158 SHEET 4 E 4 LEU A 220 ARG A 221 -1 O LEU A 220 N PHE A 210 SHEET 1 F 5 GLN B 24 ARG B 29 0 SHEET 2 F 5 LYS B 107 TYR B 118 1 O ARG B 114 N GLN B 24 SHEET 3 F 5 GLY B 95 ASN B 103 -1 N PHE B 97 O TYR B 113 SHEET 4 F 5 ARG B 48 ASN B 54 -1 N LYS B 52 O ARG B 98 SHEET 5 F 5 LYS B 62 LEU B 64 -1 O LEU B 64 N TRP B 51 SHEET 1 G 3 LEU B 34 LEU B 36 0 SHEET 2 G 3 LEU B 84 LEU B 86 -1 O LEU B 86 N LEU B 34 SHEET 3 G 3 ARG B 77 VAL B 78 -1 N ARG B 77 O PHE B 85 SHEET 1 H 4 GLU B 125 VAL B 127 0 SHEET 2 H 4 ASN B 139 SER B 149 -1 O THR B 143 N VAL B 127 SHEET 3 H 4 PHE B 186 VAL B 194 -1 O SER B 190 N CYS B 144 SHEET 4 H 4 SER B 172 ARG B 179 -1 N ARG B 178 O THR B 187 SHEET 1 I 2 GLU B 132 THR B 134 0 SHEET 2 I 2 ARG B 228 TRP B 230 1 O TRP B 230 N LEU B 133 SHEET 1 J 4 LYS B 162 PRO B 163 0 SHEET 2 J 4 THR B 154 LEU B 159 -1 N LEU B 159 O LYS B 162 SHEET 3 J 4 PHE B 206 SER B 211 -1 O SER B 207 N HIS B 158 SHEET 4 J 4 LEU B 220 ARG B 221 -1 O LEU B 220 N PHE B 210 SSBOND 1 CYS A 38 CYS A 99 1555 1555 2.03 SSBOND 2 CYS A 144 CYS A 208 1555 1555 2.03 SSBOND 3 CYS B 38 CYS B 99 1555 1555 2.03 SSBOND 4 CYS B 144 CYS B 208 1555 1555 2.03 CISPEP 1 PRO A 45 PRO A 46 0 -1.56 CISPEP 2 ASN A 105 GLY A 106 0 1.31 CISPEP 3 TYR A 150 PRO A 151 0 -6.35 CISPEP 4 PRO B 45 PRO B 46 0 -1.59 CISPEP 5 ASN B 105 GLY B 106 0 1.41 CISPEP 6 TYR B 150 PRO B 151 0 -6.26 CRYST1 77.920 77.920 224.387 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012834 0.007410 0.000000 0.00000 SCALE2 0.000000 0.014819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004457 0.00000 MTRIX1 1 0.491606 -0.870810 -0.003618 0.06385 1 MTRIX2 1 -0.870817 -0.491601 -0.002298 0.28784 1 MTRIX3 1 0.000223 0.004280 -0.999991 -24.77360 1 MTRIX1 2 0.503308 -0.864104 0.002295 -0.09483 1 MTRIX2 2 -0.864107 -0.503309 -4.176350 -0.25861 1 MTRIX3 2 0.001191 -0.001962 -0.999997 -25.01280 1