HEADER FLUORESCENT PROTEIN 16-JAN-14 4OGS TITLE CRYSTAL STRUCTURE OF GFP S205A/T203V AT 2.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-CAN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.REMINGTON,M.SAIF REVDAT 2 18-JUN-14 4OGS 1 JRNL REVDAT 1 14-MAY-14 4OGS 0 JRNL AUTH V.WINEMAN-FISHER,R.SIMKOVITCH,S.SHOMER,R.GEPSHTEIN, JRNL AUTH 2 D.HUPPERT,M.SAIF,K.KALLIO,S.J.REMINGTON,Y.MILLER JRNL TITL INSIGHT INTO THE STRUCTURE AND THE MECHANISM OF THE SLOW JRNL TITL 2 PROTON TRANSFER IN THE GFP DOUBLE MUTANT T203V/S205A. JRNL REF PHYS CHEM CHEM PHYS V. 16 11211 2014 JRNL REFN ISSN 1463-9076 JRNL PMID 24776960 JRNL DOI 10.1039/C4CP00311J REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 65.5 REMARK 3 NUMBER OF REFLECTIONS : 14492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 778 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.4690 REMARK 3 BIN FREE R VALUE SET COUNT : 1 REMARK 3 BIN FREE R VALUE : 0.6930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.02000 REMARK 3 B22 (A**2) : 3.02000 REMARK 3 B33 (A**2) : -6.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3275 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4906 ; 1.813 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7521 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 7.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.252 ;24.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;17.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.841 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4182 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 859 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE PRODUCED USING 1 UL REMARK 280 PROTEIN (26 MG/ML IN 0.1 M IMIDAZOLE, PH 7.8) MIXED WITH 1 UL REMARK 280 WELL SOLUTION, CRYSTALLIZATION SCREENS VARIED FROM 22% TO 32% (W: REMARK 280 V) POLYETHYLENE GLYCOL MONOMETHYL ETHER (PEG) 2000 AND 0.05M TO REMARK 280 0.2M KBR AT ROOM TEMPERATURE, FOR A RANGE OF PH VALUES NEAR REMARK 280 NEUTRALITY, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.61500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.30450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.30450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.80750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.30450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.30450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.42250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.30450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.30450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.80750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.30450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.30450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.42250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 LYS A 26 NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 CRO A 66 CG1 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 90 OE2 REMARK 470 LYS A 101 CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 131 NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 162 CE NZ REMARK 470 ILE A 171 CD1 REMARK 470 GLU A 172 CD OE1 OE2 REMARK 470 VAL A 193 CG1 CG2 REMARK 470 LEU A 195 CD1 CD2 REMARK 470 LEU A 221 CD1 CD2 REMARK 470 GLU B 5 OE2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 ILE B 47 CG1 CG2 CD1 REMARK 470 CRO B 66 CG1 REMARK 470 LYS B 79 NZ REMARK 470 ARG B 80 CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 ILE B 98 CD1 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLN B 157 CB CG CD OE1 NE2 REMARK 470 LYS B 158 CB CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 172 CD OE1 OE2 REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 HIS B 231 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 305 O HOH B 425 6555 2.06 REMARK 500 CG LYS A 101 O HOH A 318 7555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 90 CB GLU B 90 CG 0.307 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 108.22 -164.43 REMARK 500 PRO A 75 170.78 -55.25 REMARK 500 ASP A 103 -170.49 -170.99 REMARK 500 PHE A 165 162.58 177.12 REMARK 500 VAL A 193 170.74 -38.67 REMARK 500 SER B 86 -49.39 -25.09 REMARK 500 ASP B 103 -174.33 -179.26 REMARK 500 GLU B 115 77.18 -115.78 REMARK 500 ASP B 129 7.93 88.25 REMARK 500 HIS B 199 -177.97 -170.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 366 DISTANCE = 5.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QLE RELATED DB: PDB REMARK 900 GFP S205V MUTATION DBREF 4OGS A 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 4OGS B 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 4OGS CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4OGS CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4OGS CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4OGS ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4OGS VAL A 203 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 4OGS ALA A 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQADV 4OGS CRO B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4OGS CRO B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4OGS CRO B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4OGS ARG B 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4OGS VAL B 203 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 4OGS ALA B 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQRES 1 A 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU SER VAL GLN ALA ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 236 TYR LYS SEQRES 1 B 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 B 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 B 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 B 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 236 ASN HIS TYR LEU SER VAL GLN ALA ALA LEU SER LYS ASP SEQRES 17 B 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 B 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 B 236 TYR LYS MODRES 4OGS CRO A 66 GLY MODRES 4OGS CRO A 66 TYR MODRES 4OGS CRO A 66 GLY MODRES 4OGS CRO B 66 GLY MODRES 4OGS CRO B 66 TYR MODRES 4OGS CRO B 66 GLY HET CRO A 66 21 HET CRO B 66 21 HET CL B 301 1 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM CL CHLORIDE ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 CL CL 1- FORMUL 4 HOH *155(H2 O) HELIX 1 1 LYS A 3 PHE A 8 5 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 GLU B 6 GLY B 10 5 5 HELIX 7 7 PRO B 56 VAL B 61 5 6 HELIX 8 8 VAL B 68 SER B 72 5 5 HELIX 9 9 PRO B 75 HIS B 81 5 7 HELIX 10 10 ASP B 82 ALA B 87 1 6 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O GLY A 35 N VAL A 12 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N TYR A 200 O ALA A 227 SHEET 6 A12 SER A 147 ASP A 155 -1 N HIS A 148 O VAL A 203 SHEET 7 A12 GLY A 160 ILE A 171 -1 O LYS A 162 N MET A 153 SHEET 8 A12 SER A 175 PRO A 187 -1 O SER A 175 N ILE A 171 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 A12 THR A 118 ILE A 128 -1 O GLU A 124 N ARG A 109 SHEET 12 A12 VAL A 11 VAL A 22 1 N PRO A 13 O LEU A 119 SHEET 1 B12 VAL B 12 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O GLY B 35 N VAL B 12 SHEET 3 B12 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 B12 HIS B 217 ALA B 227 -1 O GLU B 222 N LEU B 42 SHEET 5 B12 HIS B 199 SER B 208 -1 N TYR B 200 O ALA B 227 SHEET 6 B12 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 B12 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 B12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 B12 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 B12 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 B12 THR B 118 ILE B 128 -1 O GLU B 124 N ARG B 109 SHEET 12 B12 VAL B 12 VAL B 22 1 N LEU B 15 O ASN B 121 LINK C PHE A 64 N1 CRO A 66 1555 1555 1.33 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.43 LINK C PHE B 64 N1 CRO B 66 1555 1555 1.35 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.43 CISPEP 1 MET A 88 PRO A 89 0 5.52 CISPEP 2 MET B 88 PRO B 89 0 8.54 SITE 1 AC1 5 ASN A 146 ARG A 168 ASN B 146 ARG B 168 SITE 2 AC1 5 HOH B 444 CRYST1 86.609 86.609 119.230 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008387 0.00000