HEADER OXIDOREDUCTASE 16-JAN-14 4OH1 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ZINC-BINDING DEHYDROGENASE (GUTB) FROM TITLE 2 CLOSTRIDIUM SCINDENS ATCC 35704 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-IDITOL 2-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE ZINC-BINDING DEHYDROGENASE; COMPND 5 EC: 1.1.1.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SCINDENS; SOURCE 3 ORGANISM_TAXID: 411468; SOURCE 4 STRAIN: ATCC 35704; SOURCE 5 GENE: CLOSCI_00901, GUTB, ZP_02430688; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ALCOHOL DEHYDROGENASE GROES-LIKE DOMAIN (PF08240), ZINC-BINDING KEYWDS 2 DEHYDROGENASE (PF00107), STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 4 BIOLOGY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4OH1 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4OH1 1 JRNL REVDAT 2 22-NOV-17 4OH1 1 REMARK REVDAT 1 05-FEB-14 4OH1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ZINC-BINDING DEHYDROGENASE JRNL TITL 2 (GUTB) FROM CLOSTRIDIUM SCINDENS ATCC 35704 AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.10000 REMARK 3 B22 (A**2) : 4.29000 REMARK 3 B33 (A**2) : -2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2770 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2664 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3731 ; 1.779 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6150 ; 0.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 6.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.588 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;15.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.122 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3114 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.735 ; 3.749 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1404 ; 2.736 ; 3.749 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1755 ; 4.009 ; 5.610 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0269 15.6853 15.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0430 REMARK 3 T33: 0.0295 T12: 0.0259 REMARK 3 T13: 0.0346 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.5100 L22: 0.8041 REMARK 3 L33: 1.3296 L12: -0.1385 REMARK 3 L13: 0.0693 L23: 0.3299 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.0647 S13: -0.0079 REMARK 3 S21: 0.1697 S22: 0.0163 S23: 0.1471 REMARK 3 S31: -0.0514 S32: -0.1994 S33: 0.0245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. PEG 400 FRAGMENTS, CHLORIDE (CL) IONS, AND REMARK 3 ETHYLENE GLYCOL (EDO) MODELED WERE PRESENT IN CRYSTALLIZATION/ REMARK 3 CRYO CONDITIONS. X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH REMARK 3 SCANS AND ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE MODELING OF REMARK 3 ZINC IONS. 7. RESIDUE CYSTEINE AT POSITION 45 (CYS45) IS LIKELY REMARK 3 PARTIALLY OXIDIZED (OCS). REMARK 4 REMARK 4 4OH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939,0.96109,0.97919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.355 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 24.0% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M HEPES PH 6.75, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.93500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.79850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.54350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.93500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.79850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.54350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.93500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.79850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.54350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.93500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.79850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.54350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -228.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.87000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 63.87000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 404 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 SER A 65 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB GLU A 58 CB GLU A 58 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 107 23.28 -143.79 REMARK 500 MSE A 126 77.78 -112.96 REMARK 500 PHE A 129 54.15 -92.61 REMARK 500 LEU A 287 -65.35 -105.75 REMARK 500 GLN A 299 -43.92 75.55 REMARK 500 ILE A 319 -52.42 -132.58 REMARK 500 ASN A 328 31.78 -97.91 REMARK 500 LYS A 339 17.76 52.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS A 45 OD2 REMARK 620 2 HIS A 73 NE2 69.4 REMARK 620 3 GLU A 74 OE2 92.7 107.3 REMARK 620 4 GLU A 156 OE1 164.4 98.7 100.7 REMARK 620 5 HOH A 526 O 83.9 143.8 97.7 102.0 REMARK 620 6 HOH A 569 O 79.5 77.7 168.7 88.2 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 CYS A 108 SG 111.5 REMARK 620 3 CYS A 111 SG 117.2 104.8 REMARK 620 4 CYS A 119 SG 105.9 116.7 100.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-429181 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4OH1 A 1 350 UNP B0NC68 B0NC68_CLOSV 1 350 SEQADV 4OH1 GLY A 0 UNP B0NC68 EXPRESSION TAG SEQRES 1 A 351 GLY MSE ARG GLN LEU PHE VAL THR SER ILE ARG ASP PHE SEQRES 2 A 351 GLU LYS ASN THR MSE GLY THR VAL ASP MSE MSE GLU ALA SEQRES 3 A 351 PRO MSE PRO GLU PRO LYS ASP GLU GLU ILE ARG ILE LYS SEQRES 4 A 351 VAL VAL TYR ALA SER ILE OCS GLY SER ASP THR HIS ILE SEQRES 5 A 351 LEU THR GLY ASN LEU GLY GLU MSE GLU SER THR THR ARG SEQRES 6 A 351 SER MSE LEU PRO MSE SER PHE GLY HIS GLU LEU SER GLY SEQRES 7 A 351 VAL ILE ASP LYS VAL GLY SER THR ALA GLU LYS MSE GLY SEQRES 8 A 351 PHE LYS VAL GLY GLN LYS VAL VAL ALA ASN TYR ALA LYS SEQRES 9 A 351 TYR CYS GLY CYS CYS GLU ASN CYS ARG GLU GLY LYS VAL SEQRES 10 A 351 ASN LEU CYS SER ASN MSE GLY TYR ARG MSE ASN GLY PHE SEQRES 11 A 351 SER GLU TYR ALA VAL TYR HIS MSE SER GLN ILE PHE PRO SEQRES 12 A 351 ILE PRO ASP ASP ALA ASP LEU LYS ASP TYR ALA LEU VAL SEQRES 13 A 351 GLU PRO LEU THR VAL ALA LEU SER SER ALA GLU GLN ALA SEQRES 14 A 351 LYS ILE SER TYR GLY LYS SER VAL ALA ILE MSE GLY ALA SEQRES 15 A 351 GLY GLY LEU GLY MSE MSE LEU VAL GLN LEU ALA ARG LEU SEQRES 16 A 351 ALA GLY ALA SER THR ILE THR VAL PHE ASP ILE VAL PRO SEQRES 17 A 351 GLU LYS LEU GLU LEU ALA LEU GLU ASN GLY ALA ASP TYR SEQRES 18 A 351 ALA LEU ASN SER ALA GLU GLU GLY VAL ALA GLU ARG ALA SEQRES 19 A 351 ILE GLU LEU ALA GLY GLY ARG TYR ASP CYS VAL LEU GLU SEQRES 20 A 351 GLY THR GLY ALA THR ALA ALA ALA LYS LEU GLY LEU GLN SEQRES 21 A 351 LEU LEU ALA ARG ASP GLY ASP ALA VAL TYR PHE ALA MSE SEQRES 22 A 351 TYR GLY LYS ASP PRO ILE LEU PRO VAL ASN LEU GLN SER SEQRES 23 A 351 ASP LEU TYR TRP ASP GLN LYS HIS ILE HIS GLY MSE ILE SEQRES 24 A 351 GLN GLY ALA TRP GLN PHE PRO LYS SER ILE ARG MSE ILE SEQRES 25 A 351 PRO ARG MSE ASP PHE SER LYS ILE ILE GLN LYS GLU HIS SEQRES 26 A 351 THR LEU THR ASN TYR LYS GLN ALA PHE GLU ASP LEU TYR SEQRES 27 A 351 SER LYS LYS TYR ALA LYS ILE VAL ILE LYS MSE ASP GLU MODRES 4OH1 MSE A 1 MET SELENOMETHIONINE MODRES 4OH1 MSE A 17 MET SELENOMETHIONINE MODRES 4OH1 MSE A 22 MET SELENOMETHIONINE MODRES 4OH1 MSE A 23 MET SELENOMETHIONINE MODRES 4OH1 MSE A 27 MET SELENOMETHIONINE MODRES 4OH1 OCS A 45 CYS CYSTEINESULFONIC ACID MODRES 4OH1 MSE A 59 MET SELENOMETHIONINE MODRES 4OH1 MSE A 66 MET SELENOMETHIONINE MODRES 4OH1 MSE A 69 MET SELENOMETHIONINE MODRES 4OH1 MSE A 89 MET SELENOMETHIONINE MODRES 4OH1 MSE A 122 MET SELENOMETHIONINE MODRES 4OH1 MSE A 126 MET SELENOMETHIONINE MODRES 4OH1 MSE A 137 MET SELENOMETHIONINE MODRES 4OH1 MSE A 179 MET SELENOMETHIONINE MODRES 4OH1 MSE A 186 MET SELENOMETHIONINE MODRES 4OH1 MSE A 187 MET SELENOMETHIONINE MODRES 4OH1 MSE A 272 MET SELENOMETHIONINE MODRES 4OH1 MSE A 297 MET SELENOMETHIONINE MODRES 4OH1 MSE A 310 MET SELENOMETHIONINE MODRES 4OH1 MSE A 314 MET SELENOMETHIONINE MODRES 4OH1 MSE A 348 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 22 8 HET MSE A 23 8 HET MSE A 27 8 HET OCS A 45 9 HET MSE A 59 8 HET MSE A 66 8 HET MSE A 69 8 HET MSE A 89 8 HET MSE A 122 8 HET MSE A 126 8 HET MSE A 137 8 HET MSE A 179 8 HET MSE A 186 8 HET MSE A 187 8 HET MSE A 272 8 HET MSE A 297 8 HET MSE A 310 8 HET MSE A 314 8 HET MSE A 348 8 HET ZN A 401 1 HET ZN A 402 1 HET CL A 403 1 HET CL A 404 1 HET EDO A 405 4 HET PG4 A 406 13 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 EDO C2 H6 O2 FORMUL 7 PG4 C8 H18 O5 FORMUL 8 HOH *193(H2 O) HELIX 1 1 OCS A 45 GLY A 54 1 10 HELIX 2 2 GLU A 58 MSE A 66 1 9 HELIX 3 3 GLY A 83 MSE A 89 1 7 HELIX 4 4 CYS A 108 GLU A 113 1 6 HELIX 5 5 GLY A 114 CYS A 119 5 6 HELIX 6 6 ASP A 148 ALA A 153 1 6 HELIX 7 7 LEU A 154 ALA A 168 1 15 HELIX 8 8 GLY A 182 LEU A 194 1 13 HELIX 9 9 VAL A 206 ASN A 216 1 11 HELIX 10 10 GLY A 228 GLY A 238 1 11 HELIX 11 11 ALA A 250 LEU A 260 1 11 HELIX 12 12 GLN A 303 ILE A 311 1 9 HELIX 13 13 PRO A 312 MSE A 314 5 3 HELIX 14 14 ASP A 315 LYS A 318 5 4 HELIX 15 15 ASN A 328 SER A 338 1 11 SHEET 1 A 3 THR A 19 ALA A 25 0 SHEET 2 A 3 MSE A 1 SER A 8 -1 N MSE A 1 O ALA A 25 SHEET 3 A 3 MSE A 69 SER A 70 -1 O MSE A 69 N VAL A 6 SHEET 1 B 5 TYR A 132 HIS A 136 0 SHEET 2 B 5 GLU A 34 ILE A 44 -1 N ILE A 37 O ALA A 133 SHEET 3 B 5 GLU A 74 VAL A 82 -1 O VAL A 78 N LYS A 38 SHEET 4 B 5 LYS A 96 ALA A 99 -1 O VAL A 97 N GLY A 77 SHEET 5 B 5 ILE A 140 PRO A 142 -1 O PHE A 141 N VAL A 98 SHEET 1 C 4 TYR A 132 HIS A 136 0 SHEET 2 C 4 GLU A 34 ILE A 44 -1 N ILE A 37 O ALA A 133 SHEET 3 C 4 LYS A 343 LYS A 347 -1 O ILE A 346 N ALA A 42 SHEET 4 C 4 ILE A 320 THR A 325 1 N HIS A 324 O LYS A 347 SHEET 1 D 2 ALA A 102 LYS A 103 0 SHEET 2 D 2 GLY A 123 TYR A 124 -1 O GLY A 123 N LYS A 103 SHEET 1 E 6 TYR A 220 ASN A 223 0 SHEET 2 E 6 THR A 199 ASP A 204 1 N VAL A 202 O LEU A 222 SHEET 3 E 6 SER A 175 MSE A 179 1 N VAL A 176 O THR A 199 SHEET 4 E 6 TYR A 241 GLU A 246 1 O LEU A 245 N MSE A 179 SHEET 5 E 6 LEU A 261 TYR A 269 1 O VAL A 268 N GLU A 246 SHEET 6 E 6 HIS A 293 GLY A 296 1 O HIS A 295 N ALA A 267 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C THR A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N GLY A 18 1555 1555 1.33 LINK C ASP A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N GLU A 24 1555 1555 1.33 LINK C PRO A 26 N MSE A 27 1555 1555 1.32 LINK C MSE A 27 N PRO A 28 1555 1555 1.34 LINK C ILE A 44 N OCS A 45 1555 1555 1.30 LINK C OCS A 45 N GLY A 46 1555 1555 1.34 LINK C GLU A 58 N MSE A 59 1555 1555 1.34 LINK C MSE A 59 N GLU A 60 1555 1555 1.33 LINK C SER A 65 N MSE A 66 1555 1555 1.32 LINK C MSE A 66 N LEU A 67 1555 1555 1.33 LINK C PRO A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N SER A 70 1555 1555 1.32 LINK C LYS A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N GLY A 90 1555 1555 1.32 LINK C ASN A 121 N MSE A 122 1555 1555 1.31 LINK C MSE A 122 N GLY A 123 1555 1555 1.32 LINK C ARG A 125 N MSE A 126 1555 1555 1.34 LINK C MSE A 126 N ASN A 127 1555 1555 1.32 LINK C HIS A 136 N MSE A 137 1555 1555 1.32 LINK C MSE A 137 N SER A 138 1555 1555 1.32 LINK C ILE A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N GLY A 180 1555 1555 1.32 LINK C GLY A 185 N MSE A 186 1555 1555 1.34 LINK C MSE A 186 N MSE A 187 1555 1555 1.31 LINK C MSE A 187 N LEU A 188 1555 1555 1.33 LINK C ALA A 271 N MSE A 272 1555 1555 1.32 LINK C MSE A 272 N TYR A 273 1555 1555 1.32 LINK C GLY A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N ILE A 298 1555 1555 1.34 LINK C ARG A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N ILE A 311 1555 1555 1.31 LINK C ARG A 313 N MSE A 314 1555 1555 1.32 LINK C MSE A 314 N ASP A 315 1555 1555 1.31 LINK C LYS A 347 N MSE A 348 1555 1555 1.32 LINK C MSE A 348 N ASP A 349 1555 1555 1.32 LINK OD2 OCS A 45 ZN ZN A 401 1555 1555 2.29 LINK NE2 HIS A 73 ZN ZN A 401 1555 1555 2.44 LINK OE2 GLU A 74 ZN ZN A 401 1555 1555 2.07 LINK SG CYS A 105 ZN ZN A 402 1555 1555 2.38 LINK SG CYS A 108 ZN ZN A 402 1555 1555 2.38 LINK SG CYS A 111 ZN ZN A 402 1555 1555 2.41 LINK SG CYS A 119 ZN ZN A 402 1555 1555 2.45 LINK OE1 GLU A 156 ZN ZN A 401 1555 1555 2.10 LINK ZN ZN A 401 O HOH A 526 1555 1555 2.39 LINK ZN ZN A 401 O HOH A 569 1555 1555 2.39 CISPEP 1 LEU A 67 PRO A 68 0 -3.92 SITE 1 AC1 6 OCS A 45 HIS A 73 GLU A 74 GLU A 156 SITE 2 AC1 6 HOH A 526 HOH A 569 SITE 1 AC2 4 CYS A 105 CYS A 108 CYS A 111 CYS A 119 SITE 1 AC3 1 ARG A 263 SITE 1 AC4 2 LYS A 169 HIS A 295 SITE 1 AC5 4 GLU A 109 GLU A 113 ARG A 240 ASP A 242 SITE 1 AC6 7 ILE A 143 PRO A 144 ASP A 145 ASP A 146 SITE 2 AC6 7 HOH A 562 HOH A 633 HOH A 639 CRYST1 63.870 85.597 149.087 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006707 0.00000