data_4OIB
#
_entry.id 4OIB
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4OIB pdb_00004oib 10.2210/pdb4oib/pdb
RCSB RCSB084528 ? ?
WWPDB D_1000084528 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2014-07-16
2 'Structure model' 2 0 2020-07-29
3 'Structure model' 2 1 2024-10-16
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' Advisory
2 2 'Structure model' 'Atomic model'
3 2 'Structure model' 'Data collection'
4 2 'Structure model' 'Derived calculations'
5 2 'Structure model' 'Structure summary'
6 3 'Structure model' 'Data collection'
7 3 'Structure model' 'Database references'
8 3 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' atom_site
2 2 'Structure model' chem_comp
3 2 'Structure model' entity
4 2 'Structure model' pdbx_branch_scheme
5 2 'Structure model' pdbx_chem_comp_identifier
6 2 'Structure model' pdbx_entity_branch
7 2 'Structure model' pdbx_entity_branch_descriptor
8 2 'Structure model' pdbx_entity_branch_link
9 2 'Structure model' pdbx_entity_branch_list
10 2 'Structure model' pdbx_entity_nonpoly
11 2 'Structure model' pdbx_nonpoly_scheme
12 2 'Structure model' pdbx_struct_assembly_gen
13 2 'Structure model' pdbx_validate_close_contact
14 2 'Structure model' struct_asym
15 2 'Structure model' struct_conn
16 2 'Structure model' struct_site
17 2 'Structure model' struct_site_gen
18 3 'Structure model' chem_comp
19 3 'Structure model' chem_comp_atom
20 3 'Structure model' chem_comp_bond
21 3 'Structure model' database_2
22 3 'Structure model' pdbx_entry_details
23 3 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_atom_site.B_iso_or_equiv'
2 2 'Structure model' '_atom_site.Cartn_x'
3 2 'Structure model' '_atom_site.Cartn_y'
4 2 'Structure model' '_atom_site.Cartn_z'
5 2 'Structure model' '_atom_site.auth_asym_id'
6 2 'Structure model' '_atom_site.auth_atom_id'
7 2 'Structure model' '_atom_site.auth_comp_id'
8 2 'Structure model' '_atom_site.auth_seq_id'
9 2 'Structure model' '_atom_site.label_asym_id'
10 2 'Structure model' '_atom_site.label_atom_id'
11 2 'Structure model' '_atom_site.label_comp_id'
12 2 'Structure model' '_atom_site.label_entity_id'
13 2 'Structure model' '_atom_site.type_symbol'
14 2 'Structure model' '_chem_comp.name'
15 2 'Structure model' '_chem_comp.type'
16 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
17 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2'
18 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2'
19 2 'Structure model' '_struct_conn.pdbx_dist_value'
20 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
21 2 'Structure model' '_struct_conn.pdbx_role'
22 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id'
26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id'
27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id'
28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id'
29 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id'
33 2 'Structure model' '_struct_conn.ptnr2_label_comp_id'
34 3 'Structure model' '_chem_comp.pdbx_synonyms'
35 3 'Structure model' '_database_2.pdbx_DOI'
36 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4OIB
_pdbx_database_status.recvd_initial_deposition_date 2014-01-19
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 4OI9 . unspecified
PDB 4OIA . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Recacha, R.' 1
'Jimenez, D.' 2
'Tian, L.' 3
'Barredo, R.' 4
'Ghamberg, C.' 5
'Casasnovas, J.M.' 6
#
_citation.id primary
_citation.title
'Crystal structures of an ICAM-5 ectodomain fragment show electrostatic-based homophilic adhesions.'
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_volume 70
_citation.page_first 1934
_citation.page_last 1943
_citation.year 2014
_citation.journal_id_ASTM ABCRE6
_citation.country DK
_citation.journal_id_ISSN 0907-4449
_citation.journal_id_CSD 0766
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25004970
_citation.pdbx_database_id_DOI 10.1107/S1399004714009468
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Recacha, R.' 1 ?
primary 'Jimenez, D.' 2 ?
primary 'Tian, L.' 3 ?
primary 'Barredo, R.' 4 ?
primary 'Gahmberg, C.G.' 5 ?
primary 'Casasnovas, J.M.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Intercellular adhesion molecule 5' 41311.652 1 ? ? D1-D4 ?
2 branched man
'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 2 ?
? ? ?
3 branched man
;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
748.682 1 ? ? ? ?
4 branched man
;alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
748.682 2 ? ? ? ?
5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 4 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'ICAM-5, Telencephalin'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQAR
GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARRED
HGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNL
SPDVTLEGDAFVATATATASAEQEGARQLVCNVTLGGENRETRENVTIYSFPAPLLTLSEPSVSEGQMVTVTCAAGAQAL
VTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLDVDGETLIKNRSAELRVLYAPR
;
_entity_poly.pdbx_seq_one_letter_code_can
;EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQAR
GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARRED
HGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNL
SPDVTLEGDAFVATATATASAEQEGARQLVCNVTLGGENRETRENVTIYSFPAPLLTLSEPSVSEGQMVTVTCAAGAQAL
VTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLDVDGETLIKNRSAELRVLYAPR
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 5
_pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose
_pdbx_entity_nonpoly.comp_id NAG
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLU n
1 2 PRO n
1 3 PHE n
1 4 TRP n
1 5 ALA n
1 6 ASP n
1 7 LEU n
1 8 GLN n
1 9 PRO n
1 10 ARG n
1 11 VAL n
1 12 ALA n
1 13 PHE n
1 14 VAL n
1 15 GLU n
1 16 ARG n
1 17 GLY n
1 18 GLY n
1 19 SER n
1 20 LEU n
1 21 TRP n
1 22 LEU n
1 23 ASN n
1 24 CYS n
1 25 SER n
1 26 THR n
1 27 ASN n
1 28 CYS n
1 29 PRO n
1 30 ARG n
1 31 PRO n
1 32 GLU n
1 33 ARG n
1 34 GLY n
1 35 GLY n
1 36 LEU n
1 37 GLU n
1 38 THR n
1 39 SER n
1 40 LEU n
1 41 ARG n
1 42 ARG n
1 43 ASN n
1 44 GLY n
1 45 THR n
1 46 GLN n
1 47 ARG n
1 48 GLY n
1 49 LEU n
1 50 ARG n
1 51 TRP n
1 52 LEU n
1 53 ALA n
1 54 ARG n
1 55 GLN n
1 56 LEU n
1 57 VAL n
1 58 ASP n
1 59 ILE n
1 60 ARG n
1 61 GLU n
1 62 PRO n
1 63 GLU n
1 64 THR n
1 65 GLN n
1 66 PRO n
1 67 VAL n
1 68 CYS n
1 69 PHE n
1 70 PHE n
1 71 ARG n
1 72 CYS n
1 73 ALA n
1 74 ARG n
1 75 ARG n
1 76 THR n
1 77 LEU n
1 78 GLN n
1 79 ALA n
1 80 ARG n
1 81 GLY n
1 82 LEU n
1 83 ILE n
1 84 ARG n
1 85 THR n
1 86 PHE n
1 87 GLN n
1 88 ARG n
1 89 PRO n
1 90 ASP n
1 91 ARG n
1 92 VAL n
1 93 GLU n
1 94 LEU n
1 95 MET n
1 96 PRO n
1 97 LEU n
1 98 PRO n
1 99 PRO n
1 100 TRP n
1 101 GLN n
1 102 PRO n
1 103 VAL n
1 104 GLY n
1 105 GLU n
1 106 ASN n
1 107 PHE n
1 108 THR n
1 109 LEU n
1 110 SER n
1 111 CYS n
1 112 ARG n
1 113 VAL n
1 114 PRO n
1 115 GLY n
1 116 ALA n
1 117 GLY n
1 118 PRO n
1 119 ARG n
1 120 ALA n
1 121 SER n
1 122 LEU n
1 123 THR n
1 124 LEU n
1 125 THR n
1 126 LEU n
1 127 LEU n
1 128 ARG n
1 129 GLY n
1 130 ALA n
1 131 GLN n
1 132 GLU n
1 133 LEU n
1 134 ILE n
1 135 ARG n
1 136 ARG n
1 137 SER n
1 138 PHE n
1 139 ALA n
1 140 GLY n
1 141 GLU n
1 142 PRO n
1 143 PRO n
1 144 ARG n
1 145 ALA n
1 146 ARG n
1 147 GLY n
1 148 ALA n
1 149 VAL n
1 150 LEU n
1 151 THR n
1 152 ALA n
1 153 THR n
1 154 VAL n
1 155 LEU n
1 156 ALA n
1 157 ARG n
1 158 ARG n
1 159 GLU n
1 160 ASP n
1 161 HIS n
1 162 GLY n
1 163 ALA n
1 164 ASN n
1 165 PHE n
1 166 SER n
1 167 CYS n
1 168 ARG n
1 169 ALA n
1 170 GLU n
1 171 LEU n
1 172 ASP n
1 173 LEU n
1 174 ARG n
1 175 PRO n
1 176 HIS n
1 177 GLY n
1 178 LEU n
1 179 GLY n
1 180 LEU n
1 181 PHE n
1 182 GLU n
1 183 ASN n
1 184 SER n
1 185 SER n
1 186 ALA n
1 187 PRO n
1 188 ARG n
1 189 GLU n
1 190 LEU n
1 191 ARG n
1 192 THR n
1 193 PHE n
1 194 SER n
1 195 LEU n
1 196 SER n
1 197 PRO n
1 198 ASP n
1 199 ALA n
1 200 PRO n
1 201 ARG n
1 202 LEU n
1 203 ALA n
1 204 ALA n
1 205 PRO n
1 206 ARG n
1 207 LEU n
1 208 LEU n
1 209 GLU n
1 210 VAL n
1 211 GLY n
1 212 SER n
1 213 GLU n
1 214 ARG n
1 215 PRO n
1 216 VAL n
1 217 SER n
1 218 CYS n
1 219 THR n
1 220 LEU n
1 221 ASP n
1 222 GLY n
1 223 LEU n
1 224 PHE n
1 225 PRO n
1 226 ALA n
1 227 SER n
1 228 GLU n
1 229 ALA n
1 230 ARG n
1 231 VAL n
1 232 TYR n
1 233 LEU n
1 234 ALA n
1 235 LEU n
1 236 GLY n
1 237 ASP n
1 238 GLN n
1 239 ASN n
1 240 LEU n
1 241 SER n
1 242 PRO n
1 243 ASP n
1 244 VAL n
1 245 THR n
1 246 LEU n
1 247 GLU n
1 248 GLY n
1 249 ASP n
1 250 ALA n
1 251 PHE n
1 252 VAL n
1 253 ALA n
1 254 THR n
1 255 ALA n
1 256 THR n
1 257 ALA n
1 258 THR n
1 259 ALA n
1 260 SER n
1 261 ALA n
1 262 GLU n
1 263 GLN n
1 264 GLU n
1 265 GLY n
1 266 ALA n
1 267 ARG n
1 268 GLN n
1 269 LEU n
1 270 VAL n
1 271 CYS n
1 272 ASN n
1 273 VAL n
1 274 THR n
1 275 LEU n
1 276 GLY n
1 277 GLY n
1 278 GLU n
1 279 ASN n
1 280 ARG n
1 281 GLU n
1 282 THR n
1 283 ARG n
1 284 GLU n
1 285 ASN n
1 286 VAL n
1 287 THR n
1 288 ILE n
1 289 TYR n
1 290 SER n
1 291 PHE n
1 292 PRO n
1 293 ALA n
1 294 PRO n
1 295 LEU n
1 296 LEU n
1 297 THR n
1 298 LEU n
1 299 SER n
1 300 GLU n
1 301 PRO n
1 302 SER n
1 303 VAL n
1 304 SER n
1 305 GLU n
1 306 GLY n
1 307 GLN n
1 308 MET n
1 309 VAL n
1 310 THR n
1 311 VAL n
1 312 THR n
1 313 CYS n
1 314 ALA n
1 315 ALA n
1 316 GLY n
1 317 ALA n
1 318 GLN n
1 319 ALA n
1 320 LEU n
1 321 VAL n
1 322 THR n
1 323 LEU n
1 324 GLU n
1 325 GLY n
1 326 VAL n
1 327 PRO n
1 328 ALA n
1 329 ALA n
1 330 VAL n
1 331 PRO n
1 332 GLY n
1 333 GLN n
1 334 PRO n
1 335 ALA n
1 336 GLN n
1 337 LEU n
1 338 GLN n
1 339 LEU n
1 340 ASN n
1 341 ALA n
1 342 THR n
1 343 GLU n
1 344 ASN n
1 345 ASP n
1 346 ASP n
1 347 ARG n
1 348 ARG n
1 349 SER n
1 350 PHE n
1 351 PHE n
1 352 CYS n
1 353 ASP n
1 354 ALA n
1 355 THR n
1 356 LEU n
1 357 ASP n
1 358 VAL n
1 359 ASP n
1 360 GLY n
1 361 GLU n
1 362 THR n
1 363 LEU n
1 364 ILE n
1 365 LYS n
1 366 ASN n
1 367 ARG n
1 368 SER n
1 369 ALA n
1 370 GLU n
1 371 LEU n
1 372 ARG n
1 373 VAL n
1 374 LEU n
1 375 TYR n
1 376 ALA n
1 377 PRO n
1 378 ARG n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'ICAM5, TLCN, TLN'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'homo sapiens'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
4 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ?
4 3 DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
'Glycam Condensed Sequence' GMML 1.0
5 3 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0
6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ?
7 4 DManpa1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
'Glycam Condensed Sequence' GMML 1.0
8 4 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c3-d1' WURCS PDB2Glycan 1.1.0
9 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ?
3 3 2 NAG C1 O1 1 NAG O4 HO4 sing ?
4 3 3 BMA C1 O1 2 NAG O4 HO4 sing ?
5 3 4 MAN C1 O1 3 BMA O6 HO6 sing ?
6 4 2 NAG C1 O1 1 NAG O4 HO4 sing ?
7 4 3 BMA C1 O1 2 NAG O4 HO4 sing ?
8 4 4 MAN C1 O1 3 BMA O3 HO3 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa
MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose
MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp
MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLU 1 1 1 GLU GLU A . n
A 1 2 PRO 2 2 2 PRO PRO A . n
A 1 3 PHE 3 3 3 PHE PHE A . n
A 1 4 TRP 4 4 4 TRP TRP A . n
A 1 5 ALA 5 5 5 ALA ALA A . n
A 1 6 ASP 6 6 6 ASP ASP A . n
A 1 7 LEU 7 7 7 LEU LEU A . n
A 1 8 GLN 8 8 8 GLN GLN A . n
A 1 9 PRO 9 9 9 PRO PRO A . n
A 1 10 ARG 10 10 10 ARG ARG A . n
A 1 11 VAL 11 11 11 VAL VAL A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 PHE 13 13 13 PHE PHE A . n
A 1 14 VAL 14 14 14 VAL VAL A . n
A 1 15 GLU 15 15 15 GLU GLU A . n
A 1 16 ARG 16 16 16 ARG ARG A . n
A 1 17 GLY 17 17 17 GLY GLY A . n
A 1 18 GLY 18 18 18 GLY GLY A . n
A 1 19 SER 19 19 19 SER SER A . n
A 1 20 LEU 20 20 20 LEU LEU A . n
A 1 21 TRP 21 21 21 TRP TRP A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 ASN 23 23 23 ASN ASN A . n
A 1 24 CYS 24 24 24 CYS CYS A . n
A 1 25 SER 25 25 25 SER SER A . n
A 1 26 THR 26 26 26 THR THR A . n
A 1 27 ASN 27 27 27 ASN ASN A . n
A 1 28 CYS 28 28 28 CYS CYS A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 ARG 30 30 30 ARG ARG A . n
A 1 31 PRO 31 31 31 PRO PRO A . n
A 1 32 GLU 32 32 32 GLU GLU A . n
A 1 33 ARG 33 33 33 ARG ALA A . n
A 1 34 GLY 34 34 34 GLY GLY A . n
A 1 35 GLY 35 35 35 GLY GLY A . n
A 1 36 LEU 36 36 36 LEU LEU A . n
A 1 37 GLU 37 37 37 GLU GLU A . n
A 1 38 THR 38 38 38 THR THR A . n
A 1 39 SER 39 39 39 SER SER A . n
A 1 40 LEU 40 40 40 LEU LEU A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 ARG 42 42 42 ARG ARG A . n
A 1 43 ASN 43 43 43 ASN ASN A . n
A 1 44 GLY 44 44 44 GLY GLY A . n
A 1 45 THR 45 45 45 THR THR A . n
A 1 46 GLN 46 46 46 GLN GLN A . n
A 1 47 ARG 47 47 47 ARG ARG A . n
A 1 48 GLY 48 48 48 GLY GLY A . n
A 1 49 LEU 49 49 49 LEU LEU A . n
A 1 50 ARG 50 50 50 ARG ARG A . n
A 1 51 TRP 51 51 51 TRP TRP A . n
A 1 52 LEU 52 52 52 LEU LEU A . n
A 1 53 ALA 53 53 53 ALA ALA A . n
A 1 54 ARG 54 54 54 ARG ARG A . n
A 1 55 GLN 55 55 55 GLN GLN A . n
A 1 56 LEU 56 56 56 LEU LEU A . n
A 1 57 VAL 57 57 57 VAL VAL A . n
A 1 58 ASP 58 58 58 ASP ASP A . n
A 1 59 ILE 59 59 59 ILE ILE A . n
A 1 60 ARG 60 60 60 ARG ARG A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 PRO 62 62 62 PRO PRO A . n
A 1 63 GLU 63 63 63 GLU GLU A . n
A 1 64 THR 64 64 64 THR THR A . n
A 1 65 GLN 65 65 65 GLN GLN A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 VAL 67 67 67 VAL VAL A . n
A 1 68 CYS 68 68 68 CYS CYS A . n
A 1 69 PHE 69 69 69 PHE PHE A . n
A 1 70 PHE 70 70 70 PHE PHE A . n
A 1 71 ARG 71 71 71 ARG ARG A . n
A 1 72 CYS 72 72 72 CYS CYS A . n
A 1 73 ALA 73 73 73 ALA ALA A . n
A 1 74 ARG 74 74 74 ARG ALA A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 THR 76 76 76 THR THR A . n
A 1 77 LEU 77 77 77 LEU LEU A . n
A 1 78 GLN 78 78 78 GLN GLN A . n
A 1 79 ALA 79 79 79 ALA ALA A . n
A 1 80 ARG 80 80 80 ARG ARG A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 LEU 82 82 82 LEU LEU A . n
A 1 83 ILE 83 83 83 ILE ILE A . n
A 1 84 ARG 84 84 84 ARG ARG A . n
A 1 85 THR 85 85 85 THR THR A . n
A 1 86 PHE 86 86 86 PHE PHE A . n
A 1 87 GLN 87 87 87 GLN GLN A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 PRO 89 89 89 PRO PRO A . n
A 1 90 ASP 90 90 90 ASP ASP A . n
A 1 91 ARG 91 91 91 ARG ARG A . n
A 1 92 VAL 92 92 92 VAL VAL A . n
A 1 93 GLU 93 93 93 GLU GLU A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 MET 95 95 95 MET MET A . n
A 1 96 PRO 96 96 96 PRO PRO A . n
A 1 97 LEU 97 97 97 LEU LEU A . n
A 1 98 PRO 98 98 98 PRO PRO A . n
A 1 99 PRO 99 99 99 PRO PRO A . n
A 1 100 TRP 100 100 100 TRP TRP A . n
A 1 101 GLN 101 101 101 GLN GLN A . n
A 1 102 PRO 102 102 102 PRO PRO A . n
A 1 103 VAL 103 103 103 VAL VAL A . n
A 1 104 GLY 104 104 104 GLY GLY A . n
A 1 105 GLU 105 105 105 GLU GLU A . n
A 1 106 ASN 106 106 106 ASN ASN A . n
A 1 107 PHE 107 107 107 PHE PHE A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 LEU 109 109 109 LEU LEU A . n
A 1 110 SER 110 110 110 SER SER A . n
A 1 111 CYS 111 111 111 CYS CYS A . n
A 1 112 ARG 112 112 112 ARG ALA A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 GLY 115 115 115 GLY GLY A . n
A 1 116 ALA 116 116 116 ALA ALA A . n
A 1 117 GLY 117 117 117 GLY GLY A . n
A 1 118 PRO 118 118 118 PRO PRO A . n
A 1 119 ARG 119 119 119 ARG ARG A . n
A 1 120 ALA 120 120 120 ALA ALA A . n
A 1 121 SER 121 121 121 SER SER A . n
A 1 122 LEU 122 122 122 LEU LEU A . n
A 1 123 THR 123 123 123 THR THR A . n
A 1 124 LEU 124 124 124 LEU LEU A . n
A 1 125 THR 125 125 125 THR THR A . n
A 1 126 LEU 126 126 126 LEU LEU A . n
A 1 127 LEU 127 127 127 LEU LEU A . n
A 1 128 ARG 128 128 128 ARG ARG A . n
A 1 129 GLY 129 129 129 GLY GLY A . n
A 1 130 ALA 130 130 130 ALA ALA A . n
A 1 131 GLN 131 131 131 GLN GLN A . n
A 1 132 GLU 132 132 132 GLU GLU A . n
A 1 133 LEU 133 133 133 LEU LEU A . n
A 1 134 ILE 134 134 134 ILE ILE A . n
A 1 135 ARG 135 135 135 ARG ARG A . n
A 1 136 ARG 136 136 136 ARG ARG A . n
A 1 137 SER 137 137 137 SER SER A . n
A 1 138 PHE 138 138 138 PHE PHE A . n
A 1 139 ALA 139 139 139 ALA ALA A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 PRO 142 142 142 PRO PRO A . n
A 1 143 PRO 143 143 143 PRO PRO A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 ALA 145 145 145 ALA ALA A . n
A 1 146 ARG 146 146 146 ARG ARG A . n
A 1 147 GLY 147 147 147 GLY GLY A . n
A 1 148 ALA 148 148 148 ALA ALA A . n
A 1 149 VAL 149 149 149 VAL VAL A . n
A 1 150 LEU 150 150 150 LEU LEU A . n
A 1 151 THR 151 151 151 THR THR A . n
A 1 152 ALA 152 152 152 ALA ALA A . n
A 1 153 THR 153 153 153 THR THR A . n
A 1 154 VAL 154 154 154 VAL VAL A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ALA 156 156 156 ALA ALA A . n
A 1 157 ARG 157 157 157 ARG ARG A . n
A 1 158 ARG 158 158 158 ARG ARG A . n
A 1 159 GLU 159 159 159 GLU GLU A . n
A 1 160 ASP 160 160 160 ASP ASP A . n
A 1 161 HIS 161 161 161 HIS HIS A . n
A 1 162 GLY 162 162 162 GLY GLY A . n
A 1 163 ALA 163 163 163 ALA ALA A . n
A 1 164 ASN 164 164 164 ASN ASN A . n
A 1 165 PHE 165 165 165 PHE PHE A . n
A 1 166 SER 166 166 166 SER SER A . n
A 1 167 CYS 167 167 167 CYS CYS A . n
A 1 168 ARG 168 168 168 ARG ARG A . n
A 1 169 ALA 169 169 169 ALA ALA A . n
A 1 170 GLU 170 170 170 GLU GLU A . n
A 1 171 LEU 171 171 171 LEU LEU A . n
A 1 172 ASP 172 172 172 ASP ASP A . n
A 1 173 LEU 173 173 173 LEU LEU A . n
A 1 174 ARG 174 174 174 ARG ARG A . n
A 1 175 PRO 175 175 175 PRO PRO A . n
A 1 176 HIS 176 176 176 HIS HIS A . n
A 1 177 GLY 177 177 177 GLY GLY A . n
A 1 178 LEU 178 178 178 LEU LEU A . n
A 1 179 GLY 179 179 179 GLY GLY A . n
A 1 180 LEU 180 180 180 LEU LEU A . n
A 1 181 PHE 181 181 181 PHE PHE A . n
A 1 182 GLU 182 182 182 GLU GLU A . n
A 1 183 ASN 183 183 183 ASN ASN A . n
A 1 184 SER 184 184 184 SER SER A . n
A 1 185 SER 185 185 185 SER SER A . n
A 1 186 ALA 186 186 186 ALA ALA A . n
A 1 187 PRO 187 187 187 PRO PRO A . n
A 1 188 ARG 188 188 188 ARG ARG A . n
A 1 189 GLU 189 189 189 GLU GLU A . n
A 1 190 LEU 190 190 190 LEU LEU A . n
A 1 191 ARG 191 191 191 ARG ARG A . n
A 1 192 THR 192 192 192 THR THR A . n
A 1 193 PHE 193 193 193 PHE PHE A . n
A 1 194 SER 194 194 194 SER SER A . n
A 1 195 LEU 195 195 195 LEU LEU A . n
A 1 196 SER 196 196 196 SER SER A . n
A 1 197 PRO 197 197 197 PRO PRO A . n
A 1 198 ASP 198 198 198 ASP ASP A . n
A 1 199 ALA 199 199 199 ALA ALA A . n
A 1 200 PRO 200 200 200 PRO PRO A . n
A 1 201 ARG 201 201 201 ARG ARG A . n
A 1 202 LEU 202 202 202 LEU LEU A . n
A 1 203 ALA 203 203 203 ALA ALA A . n
A 1 204 ALA 204 204 204 ALA ALA A . n
A 1 205 PRO 205 205 205 PRO PRO A . n
A 1 206 ARG 206 206 206 ARG ARG A . n
A 1 207 LEU 207 207 207 LEU LEU A . n
A 1 208 LEU 208 208 208 LEU LEU A . n
A 1 209 GLU 209 209 209 GLU GLU A . n
A 1 210 VAL 210 210 210 VAL VAL A . n
A 1 211 GLY 211 211 211 GLY GLY A . n
A 1 212 SER 212 212 212 SER SER A . n
A 1 213 GLU 213 213 213 GLU GLU A . n
A 1 214 ARG 214 214 214 ARG ARG A . n
A 1 215 PRO 215 215 215 PRO PRO A . n
A 1 216 VAL 216 216 216 VAL VAL A . n
A 1 217 SER 217 217 217 SER SER A . n
A 1 218 CYS 218 218 218 CYS CYS A . n
A 1 219 THR 219 219 219 THR THR A . n
A 1 220 LEU 220 220 220 LEU LEU A . n
A 1 221 ASP 221 221 221 ASP ASP A . n
A 1 222 GLY 222 222 222 GLY GLY A . n
A 1 223 LEU 223 223 223 LEU LEU A . n
A 1 224 PHE 224 224 224 PHE PHE A . n
A 1 225 PRO 225 225 225 PRO PRO A . n
A 1 226 ALA 226 226 226 ALA ALA A . n
A 1 227 SER 227 227 227 SER SER A . n
A 1 228 GLU 228 228 228 GLU GLU A . n
A 1 229 ALA 229 229 229 ALA ALA A . n
A 1 230 ARG 230 230 230 ARG ARG A . n
A 1 231 VAL 231 231 231 VAL VAL A . n
A 1 232 TYR 232 232 232 TYR TYR A . n
A 1 233 LEU 233 233 233 LEU LEU A . n
A 1 234 ALA 234 234 234 ALA ALA A . n
A 1 235 LEU 235 235 235 LEU LEU A . n
A 1 236 GLY 236 236 236 GLY GLY A . n
A 1 237 ASP 237 237 237 ASP ALA A . n
A 1 238 GLN 238 238 238 GLN GLN A . n
A 1 239 ASN 239 239 239 ASN ASN A . n
A 1 240 LEU 240 240 240 LEU LEU A . n
A 1 241 SER 241 241 241 SER SER A . n
A 1 242 PRO 242 242 242 PRO PRO A . n
A 1 243 ASP 243 243 243 ASP ASP A . n
A 1 244 VAL 244 244 244 VAL VAL A . n
A 1 245 THR 245 245 245 THR THR A . n
A 1 246 LEU 246 246 246 LEU LEU A . n
A 1 247 GLU 247 247 247 GLU GLU A . n
A 1 248 GLY 248 248 248 GLY GLY A . n
A 1 249 ASP 249 249 249 ASP ASP A . n
A 1 250 ALA 250 250 250 ALA ALA A . n
A 1 251 PHE 251 251 251 PHE PHE A . n
A 1 252 VAL 252 252 252 VAL VAL A . n
A 1 253 ALA 253 253 253 ALA ALA A . n
A 1 254 THR 254 254 254 THR THR A . n
A 1 255 ALA 255 255 255 ALA ALA A . n
A 1 256 THR 256 256 256 THR THR A . n
A 1 257 ALA 257 257 257 ALA ALA A . n
A 1 258 THR 258 258 258 THR THR A . n
A 1 259 ALA 259 259 259 ALA ALA A . n
A 1 260 SER 260 260 260 SER SER A . n
A 1 261 ALA 261 261 261 ALA ALA A . n
A 1 262 GLU 262 262 262 GLU GLU A . n
A 1 263 GLN 263 263 263 GLN GLN A . n
A 1 264 GLU 264 264 264 GLU ALA A . n
A 1 265 GLY 265 265 265 GLY GLY A . n
A 1 266 ALA 266 266 266 ALA ALA A . n
A 1 267 ARG 267 267 267 ARG ARG A . n
A 1 268 GLN 268 268 268 GLN GLN A . n
A 1 269 LEU 269 269 269 LEU LEU A . n
A 1 270 VAL 270 270 270 VAL VAL A . n
A 1 271 CYS 271 271 271 CYS CYS A . n
A 1 272 ASN 272 272 272 ASN ASN A . n
A 1 273 VAL 273 273 273 VAL VAL A . n
A 1 274 THR 274 274 274 THR THR A . n
A 1 275 LEU 275 275 275 LEU LEU A . n
A 1 276 GLY 276 276 276 GLY GLY A . n
A 1 277 GLY 277 277 277 GLY GLY A . n
A 1 278 GLU 278 278 278 GLU GLU A . n
A 1 279 ASN 279 279 279 ASN ASN A . n
A 1 280 ARG 280 280 280 ARG ARG A . n
A 1 281 GLU 281 281 281 GLU GLU A . n
A 1 282 THR 282 282 282 THR THR A . n
A 1 283 ARG 283 283 283 ARG ARG A . n
A 1 284 GLU 284 284 284 GLU GLU A . n
A 1 285 ASN 285 285 285 ASN ASN A . n
A 1 286 VAL 286 286 286 VAL VAL A . n
A 1 287 THR 287 287 287 THR THR A . n
A 1 288 ILE 288 288 288 ILE ILE A . n
A 1 289 TYR 289 289 289 TYR TYR A . n
A 1 290 SER 290 290 290 SER SER A . n
A 1 291 PHE 291 291 291 PHE PHE A . n
A 1 292 PRO 292 292 292 PRO PRO A . n
A 1 293 ALA 293 293 293 ALA ALA A . n
A 1 294 PRO 294 294 294 PRO PRO A . n
A 1 295 LEU 295 295 295 LEU LEU A . n
A 1 296 LEU 296 296 296 LEU LEU A . n
A 1 297 THR 297 297 297 THR THR A . n
A 1 298 LEU 298 298 298 LEU LEU A . n
A 1 299 SER 299 299 299 SER SER A . n
A 1 300 GLU 300 300 300 GLU GLU A . n
A 1 301 PRO 301 301 301 PRO PRO A . n
A 1 302 SER 302 302 302 SER SER A . n
A 1 303 VAL 303 303 303 VAL VAL A . n
A 1 304 SER 304 304 304 SER SER A . n
A 1 305 GLU 305 305 305 GLU GLU A . n
A 1 306 GLY 306 306 306 GLY GLY A . n
A 1 307 GLN 307 307 307 GLN GLN A . n
A 1 308 MET 308 308 308 MET MET A . n
A 1 309 VAL 309 309 309 VAL VAL A . n
A 1 310 THR 310 310 310 THR THR A . n
A 1 311 VAL 311 311 311 VAL VAL A . n
A 1 312 THR 312 312 312 THR THR A . n
A 1 313 CYS 313 313 313 CYS CYS A . n
A 1 314 ALA 314 314 314 ALA ALA A . n
A 1 315 ALA 315 315 315 ALA ALA A . n
A 1 316 GLY 316 316 316 GLY GLY A . n
A 1 317 ALA 317 317 317 ALA ALA A . n
A 1 318 GLN 318 318 318 GLN GLN A . n
A 1 319 ALA 319 319 319 ALA ALA A . n
A 1 320 LEU 320 320 320 LEU LEU A . n
A 1 321 VAL 321 321 321 VAL VAL A . n
A 1 322 THR 322 322 322 THR THR A . n
A 1 323 LEU 323 323 323 LEU LEU A . n
A 1 324 GLU 324 324 324 GLU GLU A . n
A 1 325 GLY 325 325 325 GLY GLY A . n
A 1 326 VAL 326 326 326 VAL VAL A . n
A 1 327 PRO 327 327 327 PRO PRO A . n
A 1 328 ALA 328 328 328 ALA ALA A . n
A 1 329 ALA 329 329 329 ALA ALA A . n
A 1 330 VAL 330 330 330 VAL VAL A . n
A 1 331 PRO 331 331 331 PRO PRO A . n
A 1 332 GLY 332 332 332 GLY GLY A . n
A 1 333 GLN 333 333 333 GLN GLN A . n
A 1 334 PRO 334 334 334 PRO PRO A . n
A 1 335 ALA 335 335 335 ALA ALA A . n
A 1 336 GLN 336 336 336 GLN GLN A . n
A 1 337 LEU 337 337 337 LEU LEU A . n
A 1 338 GLN 338 338 338 GLN GLN A . n
A 1 339 LEU 339 339 339 LEU LEU A . n
A 1 340 ASN 340 340 340 ASN ASN A . n
A 1 341 ALA 341 341 341 ALA ALA A . n
A 1 342 THR 342 342 342 THR THR A . n
A 1 343 GLU 343 343 343 GLU GLU A . n
A 1 344 ASN 344 344 344 ASN ASN A . n
A 1 345 ASP 345 345 345 ASP ASP A . n
A 1 346 ASP 346 346 346 ASP ASP A . n
A 1 347 ARG 347 347 347 ARG ARG A . n
A 1 348 ARG 348 348 348 ARG ARG A . n
A 1 349 SER 349 349 349 SER SER A . n
A 1 350 PHE 350 350 350 PHE PHE A . n
A 1 351 PHE 351 351 351 PHE PHE A . n
A 1 352 CYS 352 352 352 CYS CYS A . n
A 1 353 ASP 353 353 353 ASP ASP A . n
A 1 354 ALA 354 354 354 ALA ALA A . n
A 1 355 THR 355 355 355 THR THR A . n
A 1 356 LEU 356 356 356 LEU LEU A . n
A 1 357 ASP 357 357 357 ASP ASP A . n
A 1 358 VAL 358 358 358 VAL VAL A . n
A 1 359 ASP 359 359 359 ASP ASP A . n
A 1 360 GLY 360 360 360 GLY GLY A . n
A 1 361 GLU 361 361 361 GLU GLU A . n
A 1 362 THR 362 362 362 THR THR A . n
A 1 363 LEU 363 363 363 LEU LEU A . n
A 1 364 ILE 364 364 364 ILE ILE A . n
A 1 365 LYS 365 365 365 LYS LYS A . n
A 1 366 ASN 366 366 366 ASN ASN A . n
A 1 367 ARG 367 367 367 ARG ARG A . n
A 1 368 SER 368 368 368 SER SER A . n
A 1 369 ALA 369 369 369 ALA ALA A . n
A 1 370 GLU 370 370 370 GLU GLU A . n
A 1 371 LEU 371 371 371 LEU LEU A . n
A 1 372 ARG 372 372 372 ARG ARG A . n
A 1 373 VAL 373 373 ? ? ? A . n
A 1 374 LEU 374 374 ? ? ? A . n
A 1 375 TYR 375 375 ? ? ? A . n
A 1 376 ALA 376 376 ? ? ? A . n
A 1 377 PRO 377 377 ? ? ? A . n
A 1 378 ARG 378 378 ? ? ? A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 A NAG 2301 n
B 2 NAG 2 B NAG 2 A NAG 2302 n
B 2 BMA 3 B BMA 3 A BMA 2303 n
C 3 NAG 1 C NAG 1 A NAG 4301 n
C 3 NAG 2 C NAG 2 A NAG 4302 n
C 3 BMA 3 C BMA 3 A BMA 4303 n
C 3 MAN 4 C MAN 4 A MAN 4304 n
D 4 NAG 1 D NAG 1 A NAG 1061 n
D 4 NAG 2 D NAG 2 A NAG 1062 n
D 4 BMA 3 D BMA 3 A BMA 1063 n
D 4 MAN 4 D MAN 4 A MAN 1064 n
E 2 NAG 1 E NAG 1 A NAG 1641 n
E 2 NAG 2 E NAG 2 A NAG 1642 n
E 2 BMA 3 E BMA 3 A BMA 1643 n
F 4 NAG 1 F NAG 1 A NAG 2721 n
F 4 NAG 2 F NAG 2 A NAG 2722 n
F 4 BMA 3 F BMA 3 A BMA 2723 n
F 4 MAN 4 F MAN 4 A MAN 2724 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 NAG 1 2315 1831 NAG NAG A .
H 5 NAG 1 2320 2851 NAG NAG A .
I 5 NAG 1 2321 3401 NAG NAG A .
J 5 NAG 1 2322 3661 NAG NAG A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ARG 33 ? CG ? A ARG 33 CG
2 1 Y 1 A ARG 33 ? CD ? A ARG 33 CD
3 1 Y 1 A ARG 33 ? NE ? A ARG 33 NE
4 1 Y 1 A ARG 33 ? CZ ? A ARG 33 CZ
5 1 Y 1 A ARG 33 ? NH1 ? A ARG 33 NH1
6 1 Y 1 A ARG 33 ? NH2 ? A ARG 33 NH2
7 1 Y 1 A ARG 74 ? CG ? A ARG 74 CG
8 1 Y 1 A ARG 74 ? CD ? A ARG 74 CD
9 1 Y 1 A ARG 74 ? NE ? A ARG 74 NE
10 1 Y 1 A ARG 74 ? CZ ? A ARG 74 CZ
11 1 Y 1 A ARG 74 ? NH1 ? A ARG 74 NH1
12 1 Y 1 A ARG 74 ? NH2 ? A ARG 74 NH2
13 1 Y 1 A ARG 112 ? CG ? A ARG 112 CG
14 1 Y 1 A ARG 112 ? CD ? A ARG 112 CD
15 1 Y 1 A ARG 112 ? NE ? A ARG 112 NE
16 1 Y 1 A ARG 112 ? CZ ? A ARG 112 CZ
17 1 Y 1 A ARG 112 ? NH1 ? A ARG 112 NH1
18 1 Y 1 A ARG 112 ? NH2 ? A ARG 112 NH2
19 1 Y 1 A ASP 237 ? CG ? A ASP 237 CG
20 1 Y 1 A ASP 237 ? OD1 ? A ASP 237 OD1
21 1 Y 1 A ASP 237 ? OD2 ? A ASP 237 OD2
22 1 Y 1 A GLU 264 ? CG ? A GLU 264 CG
23 1 Y 1 A GLU 264 ? CD ? A GLU 264 CD
24 1 Y 1 A GLU 264 ? OE1 ? A GLU 264 OE1
25 1 Y 1 A GLU 264 ? OE2 ? A GLU 264 OE2
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
HKL-2000 'data collection' . ? 1
PHASER phasing . ? 2
PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3
XDS 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 4OIB
_cell.length_a 228.560
_cell.length_b 228.560
_cell.length_c 69.980
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 9
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4OIB
_symmetry.space_group_name_H-M 'H 3'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 146
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4OIB
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 8.52
_exptl_crystal.density_percent_sol 85.55
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 294
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.6
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '100 mM sodium acetate, 10% PEG 4000, VAPOR DIFFUSION, temperature 294K, pH 5.6'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2005-07-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID14-1'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID14-1
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 4OIB
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 25
_reflns.d_resolution_high 3.5
_reflns.number_obs 15373
_reflns.number_all ?
_reflns.percent_possible_obs 99.8
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 4OIB
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 15373
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.99
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 24.938
_refine.ls_d_res_high 3.503
_refine.ls_percent_reflns_obs 99.91
_refine.ls_R_factor_obs 0.2444
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.2424
_refine.ls_R_factor_R_free 0.2733
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.00
_refine.ls_number_reflns_R_free 1708
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values TWIN_LSQ_F
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML .
_refine.pdbx_overall_phase_error 38.91
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2825
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 284
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 3109
_refine_hist.d_res_high 3.503
_refine_hist.d_res_low 24.938
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
f_bond_d 0.004 ? ? 3191 'X-RAY DIFFRACTION' ?
f_angle_d 1.065 ? ? 4367 'X-RAY DIFFRACTION' ?
f_dihedral_angle_d 25.691 ? ? 1301 'X-RAY DIFFRACTION' ?
f_chiral_restr 0.060 ? ? 548 'X-RAY DIFFRACTION' ?
f_plane_restr 0.003 ? ? 546 'X-RAY DIFFRACTION' ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_all
_refine_ls_shell.R_factor_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.number_reflns_obs
'X-RAY DIFFRACTION' . 3.5051 3.5653 1512 0.4179 90.00 0.4534 . . 176 . . . .
'X-RAY DIFFRACTION' . 3.5653 3.6300 1534 0.4062 90.00 0.4018 . . 174 . . . .
'X-RAY DIFFRACTION' . 3.6300 3.6996 1618 0.3789 91.00 0.3999 . . 164 . . . .
'X-RAY DIFFRACTION' . 3.6996 3.7748 1436 0.3572 90.00 0.3896 . . 164 . . . .
'X-RAY DIFFRACTION' . 3.7748 3.8566 1570 0.3537 90.00 0.3666 . . 178 . . . .
'X-RAY DIFFRACTION' . 3.8566 3.9460 1566 0.3203 90.00 0.3347 . . 176 . . . .
'X-RAY DIFFRACTION' . 3.9460 4.0443 1514 0.3257 90.00 0.3290 . . 168 . . . .
'X-RAY DIFFRACTION' . 4.0443 4.1531 1476 0.3305 90.00 0.3556 . . 164 . . . .
'X-RAY DIFFRACTION' . 4.1531 4.2748 1600 0.3124 90.00 0.3705 . . 178 . . . .
'X-RAY DIFFRACTION' . 4.2748 4.4120 1560 0.2934 90.00 0.2840 . . 168 . . . .
'X-RAY DIFFRACTION' . 4.4120 4.5688 1496 0.2722 90.00 0.3549 . . 174 . . . .
'X-RAY DIFFRACTION' . 4.5688 4.7505 1564 0.2501 90.00 0.2760 . . 174 . . . .
'X-RAY DIFFRACTION' . 4.7505 4.9651 1540 0.2531 90.00 0.2456 . . 176 . . . .
'X-RAY DIFFRACTION' . 4.9651 5.2246 1492 0.2399 90.00 0.2842 . . 168 . . . .
'X-RAY DIFFRACTION' . 5.2246 5.5486 1546 0.2516 90.00 0.2949 . . 168 . . . .
'X-RAY DIFFRACTION' . 5.5486 5.9715 1556 0.2554 90.00 0.3046 . . 174 . . . .
'X-RAY DIFFRACTION' . 5.9715 6.5625 1526 0.2490 91.00 0.2747 . . 156 . . . .
'X-RAY DIFFRACTION' . 6.5625 7.4896 1538 0.2248 90.00 0.2457 . . 178 . . . .
'X-RAY DIFFRACTION' . 7.4896 9.3526 1518 0.1675 90.00 0.2082 . . 172 . . . .
'X-RAY DIFFRACTION' . 9.3526 24.9382 1536 0.1476 89.00 0.2009 . . 164 . . . .
#
_database_PDB_matrix.entry_id 4OIB
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4OIB
_struct.title 'Crystal Structure of ICAM-5 D1-D4 ectodomain fragment, Space Group R3'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4OIB
_struct_keywords.pdbx_keywords 'CELL ADHESION'
_struct_keywords.text
'Cell adhesion, cell surface, neurons, immunoglobulin superfamily, intercellular adhesion molecules, ICAM-5, telencephalin'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 2 ?
F N N 4 ?
G N N 5 ?
H N N 5 ?
I N N 5 ?
J N N 5 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code ICAM5_HUMAN
_struct_ref.pdbx_db_accession Q9UMF0
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQAR
GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARRED
HGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNL
SPDVTLEGDAFVATATATASAEQEGARQLVCNVTLGGENRETRENVTIYSFPAPLLTLSEPSVSEGQMVTVTCAAGAQAL
VTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLDVDGETLIKNRSAELRVLYAPR
;
_struct_ref.pdbx_align_begin 32
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4OIB
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 378
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q9UMF0
_struct_ref_seq.db_align_beg 32
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 409
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 378
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 118 ? ALA A 120 ? PRO A 118 ALA A 120 5 ? 3
HELX_P HELX_P2 2 THR A 342 ? ASP A 346 ? THR A 342 ASP A 346 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 24 A CYS 68 1_555 ? ? ? ? ? ? ? 2.031 ? ?
disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 28 A CYS 72 1_555 ? ? ? ? ? ? ? 2.032 ? ?
disulf3 disulf ? ? A CYS 111 SG ? ? ? 1_555 A CYS 167 SG ? ? A CYS 111 A CYS 167 1_555 ? ? ? ? ? ? ? 2.032 ? ?
disulf4 disulf ? ? A CYS 218 SG ? ? ? 1_555 A CYS 271 SG ? ? A CYS 218 A CYS 271 1_555 ? ? ? ? ? ? ? 2.031 ? ?
disulf5 disulf ? ? A CYS 313 SG ? ? ? 1_555 A CYS 352 SG ? ? A CYS 313 A CYS 352 1_555 ? ? ? ? ? ? ? 2.032 ? ?
covale1 covale one ? A ASN 23 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 23 B NAG 1 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation
covale2 covale one ? A ASN 43 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 43 C NAG 1 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation
covale3 covale one ? A ASN 106 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 106 D NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation
covale4 covale one ? A ASN 164 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 164 E NAG 1 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation
covale5 covale one ? A ASN 183 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 183 A NAG 2315 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation
covale6 covale one ? A ASN 272 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 272 F NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation
covale7 covale one ? A ASN 285 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 285 A NAG 2320 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation
covale8 covale one ? A ASN 340 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 340 A NAG 2321 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation
covale9 covale one ? A ASN 366 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 366 A NAG 2322 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation
covale10 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.437 ? ?
covale11 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.447 ? ?
covale12 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.450 ? ?
covale13 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.449 ? ?
covale14 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.445 ? ?
covale15 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.438 ? ?
covale16 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? D NAG 2 D BMA 3 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale17 covale both ? D BMA . O3 ? ? ? 1_555 D MAN . C1 ? ? D BMA 3 D MAN 4 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale18 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.452 ? ?
covale19 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? E NAG 2 E BMA 3 1_555 ? ? ? ? ? ? ? 1.461 ? ?
covale20 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale21 covale both ? F NAG . O4 ? ? ? 1_555 F BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.451 ? ?
covale22 covale both ? F BMA . O3 ? ? ? 1_555 F MAN . C1 ? ? F BMA 3 F MAN 4 1_555 ? ? ? ? ? ? ? 1.437 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 23 ? NAG B 1 ? 1_555 ASN A 23 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 43 ? NAG C 1 ? 1_555 ASN A 43 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 NAG D . ? ASN A 106 ? NAG D 1 ? 1_555 ASN A 106 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
4 NAG E . ? ASN A 164 ? NAG E 1 ? 1_555 ASN A 164 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
5 NAG F . ? ASN A 272 ? NAG F 1 ? 1_555 ASN A 272 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
6 NAG G . ? ASN A 183 ? NAG A 2315 ? 1_555 ASN A 183 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
7 NAG H . ? ASN A 285 ? NAG A 2320 ? 1_555 ASN A 285 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
8 NAG I . ? ASN A 340 ? NAG A 2321 ? 1_555 ASN A 340 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
9 NAG J . ? ASN A 366 ? NAG A 2322 ? 1_555 ASN A 366 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
10 CYS A 24 ? CYS A 68 ? CYS A 24 ? 1_555 CYS A 68 ? 1_555 SG SG . . . None 'Disulfide bridge'
11 CYS A 28 ? CYS A 72 ? CYS A 28 ? 1_555 CYS A 72 ? 1_555 SG SG . . . None 'Disulfide bridge'
12 CYS A 111 ? CYS A 167 ? CYS A 111 ? 1_555 CYS A 167 ? 1_555 SG SG . . . None 'Disulfide bridge'
13 CYS A 218 ? CYS A 271 ? CYS A 218 ? 1_555 CYS A 271 ? 1_555 SG SG . . . None 'Disulfide bridge'
14 CYS A 313 ? CYS A 352 ? CYS A 313 ? 1_555 CYS A 352 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLU 1 A . ? GLU 1 A PRO 2 A ? PRO 2 A 1 -2.75
2 PRO 2 A . ? PRO 2 A PHE 3 A ? PHE 3 A 1 -0.63
3 GLN 8 A . ? GLN 8 A PRO 9 A ? PRO 9 A 1 -12.35
4 GLY 117 A . ? GLY 117 A PRO 118 A ? PRO 118 A 1 -4.91
5 PHE 224 A . ? PHE 224 A PRO 225 A ? PRO 225 A 1 -6.99
6 GLU 264 A . ? GLU 264 A GLY 265 A ? GLY 265 A 1 -18.41
7 SER 299 A . ? SER 299 A GLU 300 A ? GLU 300 A 1 -1.02
8 ALA 329 A . ? ALA 329 A VAL 330 A ? VAL 330 A 1 -3.75
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 4 ?
B ? 3 ?
C ? 3 ?
D ? 2 ?
E ? 2 ?
F ? 4 ?
G ? 4 ?
H ? 4 ?
I ? 2 ?
J ? 4 ?
K ? 3 ?
L ? 4 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
B 1 2 ? parallel
B 2 3 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
D 1 2 ? parallel
E 1 2 ? anti-parallel
F 1 2 ? anti-parallel
F 2 3 ? anti-parallel
F 3 4 ? anti-parallel
G 1 2 ? anti-parallel
G 2 3 ? anti-parallel
G 3 4 ? anti-parallel
H 1 2 ? anti-parallel
H 2 3 ? anti-parallel
H 3 4 ? anti-parallel
I 1 2 ? parallel
J 1 2 ? anti-parallel
J 2 3 ? anti-parallel
J 3 4 ? anti-parallel
K 1 2 ? anti-parallel
K 2 3 ? anti-parallel
L 1 2 ? anti-parallel
L 2 3 ? anti-parallel
L 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ALA A 5 ? GLN A 8 ? ALA A 5 GLN A 8
A 2 GLY A 18 ? THR A 26 ? GLY A 18 THR A 26
A 3 TRP A 51 ? ILE A 59 ? TRP A 51 ILE A 59
A 4 ARG A 42 ? ARG A 47 ? ARG A 42 ARG A 47
B 1 VAL A 11 ? GLU A 15 ? VAL A 11 GLU A 15
B 2 LEU A 82 ? PHE A 86 ? LEU A 82 PHE A 86
B 3 GLU A 63 ? THR A 64 ? GLU A 63 THR A 64
C 1 ARG A 33 ? GLU A 37 ? ARG A 33 GLU A 37
C 2 VAL A 67 ? CYS A 72 ? VAL A 67 CYS A 72
C 3 ARG A 75 ? ARG A 80 ? ARG A 75 ARG A 80
D 1 GLN A 101 ? PRO A 102 ? GLN A 101 PRO A 102
D 2 THR A 192 ? PHE A 193 ? THR A 192 PHE A 193
E 1 PHE A 107 ? VAL A 113 ? PHE A 107 VAL A 113
E 2 ALA A 148 ? VAL A 154 ? ALA A 148 VAL A 154
F 1 GLN A 131 ? SER A 137 ? GLN A 131 SER A 137
F 2 LEU A 122 ? ARG A 128 ? LEU A 122 ARG A 128
F 3 ASN A 164 ? LEU A 173 ? ASN A 164 LEU A 173
F 4 GLY A 179 ? SER A 184 ? GLY A 179 SER A 184
G 1 GLN A 131 ? SER A 137 ? GLN A 131 SER A 137
G 2 LEU A 122 ? ARG A 128 ? LEU A 122 ARG A 128
G 3 ASN A 164 ? LEU A 173 ? ASN A 164 LEU A 173
G 4 ARG A 188 ? GLU A 189 ? ARG A 188 GLU A 189
H 1 ARG A 201 ? ALA A 203 ? ARG A 201 ALA A 203
H 2 GLU A 213 ? LEU A 220 ? GLU A 213 LEU A 220
H 3 ALA A 250 ? THR A 258 ? ALA A 250 THR A 258
H 4 ASP A 243 ? GLU A 247 ? ASP A 243 GLU A 247
I 1 LEU A 208 ? GLU A 209 ? LEU A 208 GLU A 209
I 2 ILE A 288 ? TYR A 289 ? ILE A 288 TYR A 289
J 1 GLN A 238 ? ASN A 239 ? GLN A 238 ASN A 239
J 2 ARG A 230 ? LEU A 235 ? ARG A 230 LEU A 235
J 3 GLN A 268 ? LEU A 275 ? GLN A 268 LEU A 275
J 4 GLU A 278 ? ASN A 285 ? GLU A 278 ASN A 285
K 1 LEU A 295 ? SER A 299 ? LEU A 295 SER A 299
K 2 MET A 308 ? ALA A 314 ? MET A 308 ALA A 314
K 3 ALA A 335 ? ASN A 340 ? ALA A 335 ASN A 340
L 1 VAL A 326 ? PRO A 327 ? VAL A 326 PRO A 327
L 2 LEU A 320 ? LEU A 323 ? LEU A 320 LEU A 323
L 3 SER A 349 ? VAL A 358 ? SER A 349 VAL A 358
L 4 GLU A 361 ? GLU A 370 ? GLU A 361 GLU A 370
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ASP A 6 ? N ASP A 6 O SER A 25 ? O SER A 25
A 2 3 N CYS A 24 ? N CYS A 24 O LEU A 52 ? O LEU A 52
A 3 4 O ALA A 53 ? O ALA A 53 N GLN A 46 ? N GLN A 46
B 1 2 N ALA A 12 ? N ALA A 12 O ARG A 84 ? O ARG A 84
B 2 3 O ILE A 83 ? O ILE A 83 N THR A 64 ? N THR A 64
C 1 2 N GLU A 37 ? N GLU A 37 O VAL A 67 ? O VAL A 67
C 2 3 N CYS A 72 ? N CYS A 72 O ARG A 75 ? O ARG A 75
D 1 2 N GLN A 101 ? N GLN A 101 O PHE A 193 ? O PHE A 193
E 1 2 N PHE A 107 ? N PHE A 107 O VAL A 154 ? O VAL A 154
F 1 2 O ARG A 136 ? O ARG A 136 N LEU A 124 ? N LEU A 124
F 2 3 N LEU A 127 ? N LEU A 127 O SER A 166 ? O SER A 166
F 3 4 N LEU A 171 ? N LEU A 171 O PHE A 181 ? O PHE A 181
G 1 2 O ARG A 136 ? O ARG A 136 N LEU A 124 ? N LEU A 124
G 2 3 N LEU A 127 ? N LEU A 127 O SER A 166 ? O SER A 166
G 3 4 N PHE A 165 ? N PHE A 165 O ARG A 188 ? O ARG A 188
H 1 2 N ALA A 203 ? N ALA A 203 O SER A 217 ? O SER A 217
H 2 3 N VAL A 216 ? N VAL A 216 O ALA A 255 ? O ALA A 255
H 3 4 O VAL A 252 ? O VAL A 252 N THR A 245 ? N THR A 245
I 1 2 N LEU A 208 ? N LEU A 208 O TYR A 289 ? O TYR A 289
J 1 2 O GLN A 238 ? O GLN A 238 N LEU A 235 ? N LEU A 235
J 2 3 N TYR A 232 ? N TYR A 232 O ASN A 272 ? O ASN A 272
J 3 4 N CYS A 271 ? N CYS A 271 O THR A 282 ? O THR A 282
K 1 2 N THR A 297 ? N THR A 297 O THR A 312 ? O THR A 312
K 2 3 N VAL A 309 ? N VAL A 309 O LEU A 339 ? O LEU A 339
L 1 2 O VAL A 326 ? O VAL A 326 N LEU A 323 ? N LEU A 323
L 2 3 N THR A 322 ? N THR A 322 O ASP A 353 ? O ASP A 353
L 3 4 N LEU A 356 ? N LEU A 356 O LEU A 363 ? O LEU A 363
#
_pdbx_entry_details.entry_id 4OIB
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 ND2 A ASN 106 ? ? C2 D NAG 1 ? ? 1.87
2 1 ND2 A ASN 285 ? ? C2 A NAG 2320 ? ? 2.02
3 1 ND2 A ASN 183 ? ? C2 A NAG 2315 ? ? 2.12
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASN A 43 ? ? -91.15 -72.16
2 1 ARG A 50 ? ? 67.03 -5.31
3 1 PRO A 197 ? ? -70.21 -165.77
4 1 ASP A 198 ? ? 62.24 75.58
5 1 ALA A 199 ? ? -49.19 152.60
6 1 ALA A 261 ? ? 75.89 -2.09
7 1 GLN A 263 ? ? 43.69 -123.68
8 1 GLU A 264 ? ? 56.35 -158.97
9 1 ALA A 266 ? ? -59.00 -2.96
10 1 ARG A 267 ? ? -66.29 -175.88
11 1 ALA A 317 ? ? 69.78 -13.33
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 340 A ASN 340 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 23 A ASN 23 ? ASN 'GLYCOSYLATION SITE'
3 A ASN 272 A ASN 272 ? ASN 'GLYCOSYLATION SITE'
4 A ASN 43 A ASN 43 ? ASN 'GLYCOSYLATION SITE'
5 A ASN 285 A ASN 285 ? ASN 'GLYCOSYLATION SITE'
6 A ASN 183 A ASN 183 ? ASN 'GLYCOSYLATION SITE'
7 A ASN 106 A ASN 106 ? ASN 'GLYCOSYLATION SITE'
8 A ASN 164 A ASN 164 ? ASN 'GLYCOSYLATION SITE'
9 A ASN 366 A ASN 366 ? ASN 'GLYCOSYLATION SITE'
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined 207.4411 50.8686 84.1111 2.2010 1.3151 1.0938 0.1023 -0.2500 -0.2123 7.4849 8.5798 5.2629
-2.6786 -0.7731 2.5937 -0.1495 -0.0418 0.4855 1.6111 0.0528 -0.0904 2.2355 0.8010 0.1272
'X-RAY DIFFRACTION' 2 ? refined 212.6787 17.4372 62.9399 1.7919 0.9672 1.3574 0.2228 -0.1835 -0.1605 5.7281 4.1636 8.6049 3.8799
0.2662 3.6001 -0.1924 -0.3875 -0.1837 1.3334 -0.3623 0.5308 0.7692 -0.2366 0.6184
'X-RAY DIFFRACTION' 3 ? refined 199.8416 -23.1541 49.5692 1.5669 1.3867 1.2165 -0.0176 0.5138 -0.6174 8.4651 9.5444 2.7057 5.1833
1.8460 -2.6964 0.5104 0.1540 0.5866 -0.3431 -0.0298 1.1585 -0.2574 0.1828 -0.2621
'X-RAY DIFFRACTION' 4 ? refined 189.2770 -61.9612 43.3795 1.4237 1.4185 1.2045 -0.1524 0.2541 -0.3613 1.5081 8.8426 6.2558 1.5627
0.8011 -0.3013 0.4604 -0.4145 -0.4491 1.1741 -0.1213 1.1140 -0.6276 -0.4768 -0.2274
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ?
;(chain 'A' and resseq 1:85)
;
'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ?
;(chain 'A' and resseq 86:193)
;
'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ?
;(chain 'A' and resseq 194:289)
;
'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ?
;(chain 'A' and resseq 290:372)
;
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A VAL 373 ? A VAL 373
2 1 Y 1 A LEU 374 ? A LEU 374
3 1 Y 1 A TYR 375 ? A TYR 375
4 1 Y 1 A ALA 376 ? A ALA 376
5 1 Y 1 A PRO 377 ? A PRO 377
6 1 Y 1 A ARG 378 ? A ARG 378
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BMA C1 C N R 74
BMA C2 C N S 75
BMA C3 C N S 76
BMA C4 C N S 77
BMA C5 C N R 78
BMA C6 C N N 79
BMA O1 O N N 80
BMA O2 O N N 81
BMA O3 O N N 82
BMA O4 O N N 83
BMA O5 O N N 84
BMA O6 O N N 85
BMA H1 H N N 86
BMA H2 H N N 87
BMA H3 H N N 88
BMA H4 H N N 89
BMA H5 H N N 90
BMA H61 H N N 91
BMA H62 H N N 92
BMA HO1 H N N 93
BMA HO2 H N N 94
BMA HO3 H N N 95
BMA HO4 H N N 96
BMA HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GLN N N N N 112
GLN CA C N S 113
GLN C C N N 114
GLN O O N N 115
GLN CB C N N 116
GLN CG C N N 117
GLN CD C N N 118
GLN OE1 O N N 119
GLN NE2 N N N 120
GLN OXT O N N 121
GLN H H N N 122
GLN H2 H N N 123
GLN HA H N N 124
GLN HB2 H N N 125
GLN HB3 H N N 126
GLN HG2 H N N 127
GLN HG3 H N N 128
GLN HE21 H N N 129
GLN HE22 H N N 130
GLN HXT H N N 131
GLU N N N N 132
GLU CA C N S 133
GLU C C N N 134
GLU O O N N 135
GLU CB C N N 136
GLU CG C N N 137
GLU CD C N N 138
GLU OE1 O N N 139
GLU OE2 O N N 140
GLU OXT O N N 141
GLU H H N N 142
GLU H2 H N N 143
GLU HA H N N 144
GLU HB2 H N N 145
GLU HB3 H N N 146
GLU HG2 H N N 147
GLU HG3 H N N 148
GLU HE2 H N N 149
GLU HXT H N N 150
GLY N N N N 151
GLY CA C N N 152
GLY C C N N 153
GLY O O N N 154
GLY OXT O N N 155
GLY H H N N 156
GLY H2 H N N 157
GLY HA2 H N N 158
GLY HA3 H N N 159
GLY HXT H N N 160
HIS N N N N 161
HIS CA C N S 162
HIS C C N N 163
HIS O O N N 164
HIS CB C N N 165
HIS CG C Y N 166
HIS ND1 N Y N 167
HIS CD2 C Y N 168
HIS CE1 C Y N 169
HIS NE2 N Y N 170
HIS OXT O N N 171
HIS H H N N 172
HIS H2 H N N 173
HIS HA H N N 174
HIS HB2 H N N 175
HIS HB3 H N N 176
HIS HD1 H N N 177
HIS HD2 H N N 178
HIS HE1 H N N 179
HIS HE2 H N N 180
HIS HXT H N N 181
ILE N N N N 182
ILE CA C N S 183
ILE C C N N 184
ILE O O N N 185
ILE CB C N S 186
ILE CG1 C N N 187
ILE CG2 C N N 188
ILE CD1 C N N 189
ILE OXT O N N 190
ILE H H N N 191
ILE H2 H N N 192
ILE HA H N N 193
ILE HB H N N 194
ILE HG12 H N N 195
ILE HG13 H N N 196
ILE HG21 H N N 197
ILE HG22 H N N 198
ILE HG23 H N N 199
ILE HD11 H N N 200
ILE HD12 H N N 201
ILE HD13 H N N 202
ILE HXT H N N 203
LEU N N N N 204
LEU CA C N S 205
LEU C C N N 206
LEU O O N N 207
LEU CB C N N 208
LEU CG C N N 209
LEU CD1 C N N 210
LEU CD2 C N N 211
LEU OXT O N N 212
LEU H H N N 213
LEU H2 H N N 214
LEU HA H N N 215
LEU HB2 H N N 216
LEU HB3 H N N 217
LEU HG H N N 218
LEU HD11 H N N 219
LEU HD12 H N N 220
LEU HD13 H N N 221
LEU HD21 H N N 222
LEU HD22 H N N 223
LEU HD23 H N N 224
LEU HXT H N N 225
LYS N N N N 226
LYS CA C N S 227
LYS C C N N 228
LYS O O N N 229
LYS CB C N N 230
LYS CG C N N 231
LYS CD C N N 232
LYS CE C N N 233
LYS NZ N N N 234
LYS OXT O N N 235
LYS H H N N 236
LYS H2 H N N 237
LYS HA H N N 238
LYS HB2 H N N 239
LYS HB3 H N N 240
LYS HG2 H N N 241
LYS HG3 H N N 242
LYS HD2 H N N 243
LYS HD3 H N N 244
LYS HE2 H N N 245
LYS HE3 H N N 246
LYS HZ1 H N N 247
LYS HZ2 H N N 248
LYS HZ3 H N N 249
LYS HXT H N N 250
MAN C1 C N S 251
MAN C2 C N S 252
MAN C3 C N S 253
MAN C4 C N S 254
MAN C5 C N R 255
MAN C6 C N N 256
MAN O1 O N N 257
MAN O2 O N N 258
MAN O3 O N N 259
MAN O4 O N N 260
MAN O5 O N N 261
MAN O6 O N N 262
MAN H1 H N N 263
MAN H2 H N N 264
MAN H3 H N N 265
MAN H4 H N N 266
MAN H5 H N N 267
MAN H61 H N N 268
MAN H62 H N N 269
MAN HO1 H N N 270
MAN HO2 H N N 271
MAN HO3 H N N 272
MAN HO4 H N N 273
MAN HO6 H N N 274
MET N N N N 275
MET CA C N S 276
MET C C N N 277
MET O O N N 278
MET CB C N N 279
MET CG C N N 280
MET SD S N N 281
MET CE C N N 282
MET OXT O N N 283
MET H H N N 284
MET H2 H N N 285
MET HA H N N 286
MET HB2 H N N 287
MET HB3 H N N 288
MET HG2 H N N 289
MET HG3 H N N 290
MET HE1 H N N 291
MET HE2 H N N 292
MET HE3 H N N 293
MET HXT H N N 294
NAG C1 C N R 295
NAG C2 C N R 296
NAG C3 C N R 297
NAG C4 C N S 298
NAG C5 C N R 299
NAG C6 C N N 300
NAG C7 C N N 301
NAG C8 C N N 302
NAG N2 N N N 303
NAG O1 O N N 304
NAG O3 O N N 305
NAG O4 O N N 306
NAG O5 O N N 307
NAG O6 O N N 308
NAG O7 O N N 309
NAG H1 H N N 310
NAG H2 H N N 311
NAG H3 H N N 312
NAG H4 H N N 313
NAG H5 H N N 314
NAG H61 H N N 315
NAG H62 H N N 316
NAG H81 H N N 317
NAG H82 H N N 318
NAG H83 H N N 319
NAG HN2 H N N 320
NAG HO1 H N N 321
NAG HO3 H N N 322
NAG HO4 H N N 323
NAG HO6 H N N 324
PHE N N N N 325
PHE CA C N S 326
PHE C C N N 327
PHE O O N N 328
PHE CB C N N 329
PHE CG C Y N 330
PHE CD1 C Y N 331
PHE CD2 C Y N 332
PHE CE1 C Y N 333
PHE CE2 C Y N 334
PHE CZ C Y N 335
PHE OXT O N N 336
PHE H H N N 337
PHE H2 H N N 338
PHE HA H N N 339
PHE HB2 H N N 340
PHE HB3 H N N 341
PHE HD1 H N N 342
PHE HD2 H N N 343
PHE HE1 H N N 344
PHE HE2 H N N 345
PHE HZ H N N 346
PHE HXT H N N 347
PRO N N N N 348
PRO CA C N S 349
PRO C C N N 350
PRO O O N N 351
PRO CB C N N 352
PRO CG C N N 353
PRO CD C N N 354
PRO OXT O N N 355
PRO H H N N 356
PRO HA H N N 357
PRO HB2 H N N 358
PRO HB3 H N N 359
PRO HG2 H N N 360
PRO HG3 H N N 361
PRO HD2 H N N 362
PRO HD3 H N N 363
PRO HXT H N N 364
SER N N N N 365
SER CA C N S 366
SER C C N N 367
SER O O N N 368
SER CB C N N 369
SER OG O N N 370
SER OXT O N N 371
SER H H N N 372
SER H2 H N N 373
SER HA H N N 374
SER HB2 H N N 375
SER HB3 H N N 376
SER HG H N N 377
SER HXT H N N 378
THR N N N N 379
THR CA C N S 380
THR C C N N 381
THR O O N N 382
THR CB C N R 383
THR OG1 O N N 384
THR CG2 C N N 385
THR OXT O N N 386
THR H H N N 387
THR H2 H N N 388
THR HA H N N 389
THR HB H N N 390
THR HG1 H N N 391
THR HG21 H N N 392
THR HG22 H N N 393
THR HG23 H N N 394
THR HXT H N N 395
TRP N N N N 396
TRP CA C N S 397
TRP C C N N 398
TRP O O N N 399
TRP CB C N N 400
TRP CG C Y N 401
TRP CD1 C Y N 402
TRP CD2 C Y N 403
TRP NE1 N Y N 404
TRP CE2 C Y N 405
TRP CE3 C Y N 406
TRP CZ2 C Y N 407
TRP CZ3 C Y N 408
TRP CH2 C Y N 409
TRP OXT O N N 410
TRP H H N N 411
TRP H2 H N N 412
TRP HA H N N 413
TRP HB2 H N N 414
TRP HB3 H N N 415
TRP HD1 H N N 416
TRP HE1 H N N 417
TRP HE3 H N N 418
TRP HZ2 H N N 419
TRP HZ3 H N N 420
TRP HH2 H N N 421
TRP HXT H N N 422
TYR N N N N 423
TYR CA C N S 424
TYR C C N N 425
TYR O O N N 426
TYR CB C N N 427
TYR CG C Y N 428
TYR CD1 C Y N 429
TYR CD2 C Y N 430
TYR CE1 C Y N 431
TYR CE2 C Y N 432
TYR CZ C Y N 433
TYR OH O N N 434
TYR OXT O N N 435
TYR H H N N 436
TYR H2 H N N 437
TYR HA H N N 438
TYR HB2 H N N 439
TYR HB3 H N N 440
TYR HD1 H N N 441
TYR HD2 H N N 442
TYR HE1 H N N 443
TYR HE2 H N N 444
TYR HH H N N 445
TYR HXT H N N 446
VAL N N N N 447
VAL CA C N S 448
VAL C C N N 449
VAL O O N N 450
VAL CB C N N 451
VAL CG1 C N N 452
VAL CG2 C N N 453
VAL OXT O N N 454
VAL H H N N 455
VAL H2 H N N 456
VAL HA H N N 457
VAL HB H N N 458
VAL HG11 H N N 459
VAL HG12 H N N 460
VAL HG13 H N N 461
VAL HG21 H N N 462
VAL HG22 H N N 463
VAL HG23 H N N 464
VAL HXT H N N 465
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BMA C1 C2 sing N N 70
BMA C1 O1 sing N N 71
BMA C1 O5 sing N N 72
BMA C1 H1 sing N N 73
BMA C2 C3 sing N N 74
BMA C2 O2 sing N N 75
BMA C2 H2 sing N N 76
BMA C3 C4 sing N N 77
BMA C3 O3 sing N N 78
BMA C3 H3 sing N N 79
BMA C4 C5 sing N N 80
BMA C4 O4 sing N N 81
BMA C4 H4 sing N N 82
BMA C5 C6 sing N N 83
BMA C5 O5 sing N N 84
BMA C5 H5 sing N N 85
BMA C6 O6 sing N N 86
BMA C6 H61 sing N N 87
BMA C6 H62 sing N N 88
BMA O1 HO1 sing N N 89
BMA O2 HO2 sing N N 90
BMA O3 HO3 sing N N 91
BMA O4 HO4 sing N N 92
BMA O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GLN N CA sing N N 107
GLN N H sing N N 108
GLN N H2 sing N N 109
GLN CA C sing N N 110
GLN CA CB sing N N 111
GLN CA HA sing N N 112
GLN C O doub N N 113
GLN C OXT sing N N 114
GLN CB CG sing N N 115
GLN CB HB2 sing N N 116
GLN CB HB3 sing N N 117
GLN CG CD sing N N 118
GLN CG HG2 sing N N 119
GLN CG HG3 sing N N 120
GLN CD OE1 doub N N 121
GLN CD NE2 sing N N 122
GLN NE2 HE21 sing N N 123
GLN NE2 HE22 sing N N 124
GLN OXT HXT sing N N 125
GLU N CA sing N N 126
GLU N H sing N N 127
GLU N H2 sing N N 128
GLU CA C sing N N 129
GLU CA CB sing N N 130
GLU CA HA sing N N 131
GLU C O doub N N 132
GLU C OXT sing N N 133
GLU CB CG sing N N 134
GLU CB HB2 sing N N 135
GLU CB HB3 sing N N 136
GLU CG CD sing N N 137
GLU CG HG2 sing N N 138
GLU CG HG3 sing N N 139
GLU CD OE1 doub N N 140
GLU CD OE2 sing N N 141
GLU OE2 HE2 sing N N 142
GLU OXT HXT sing N N 143
GLY N CA sing N N 144
GLY N H sing N N 145
GLY N H2 sing N N 146
GLY CA C sing N N 147
GLY CA HA2 sing N N 148
GLY CA HA3 sing N N 149
GLY C O doub N N 150
GLY C OXT sing N N 151
GLY OXT HXT sing N N 152
HIS N CA sing N N 153
HIS N H sing N N 154
HIS N H2 sing N N 155
HIS CA C sing N N 156
HIS CA CB sing N N 157
HIS CA HA sing N N 158
HIS C O doub N N 159
HIS C OXT sing N N 160
HIS CB CG sing N N 161
HIS CB HB2 sing N N 162
HIS CB HB3 sing N N 163
HIS CG ND1 sing Y N 164
HIS CG CD2 doub Y N 165
HIS ND1 CE1 doub Y N 166
HIS ND1 HD1 sing N N 167
HIS CD2 NE2 sing Y N 168
HIS CD2 HD2 sing N N 169
HIS CE1 NE2 sing Y N 170
HIS CE1 HE1 sing N N 171
HIS NE2 HE2 sing N N 172
HIS OXT HXT sing N N 173
ILE N CA sing N N 174
ILE N H sing N N 175
ILE N H2 sing N N 176
ILE CA C sing N N 177
ILE CA CB sing N N 178
ILE CA HA sing N N 179
ILE C O doub N N 180
ILE C OXT sing N N 181
ILE CB CG1 sing N N 182
ILE CB CG2 sing N N 183
ILE CB HB sing N N 184
ILE CG1 CD1 sing N N 185
ILE CG1 HG12 sing N N 186
ILE CG1 HG13 sing N N 187
ILE CG2 HG21 sing N N 188
ILE CG2 HG22 sing N N 189
ILE CG2 HG23 sing N N 190
ILE CD1 HD11 sing N N 191
ILE CD1 HD12 sing N N 192
ILE CD1 HD13 sing N N 193
ILE OXT HXT sing N N 194
LEU N CA sing N N 195
LEU N H sing N N 196
LEU N H2 sing N N 197
LEU CA C sing N N 198
LEU CA CB sing N N 199
LEU CA HA sing N N 200
LEU C O doub N N 201
LEU C OXT sing N N 202
LEU CB CG sing N N 203
LEU CB HB2 sing N N 204
LEU CB HB3 sing N N 205
LEU CG CD1 sing N N 206
LEU CG CD2 sing N N 207
LEU CG HG sing N N 208
LEU CD1 HD11 sing N N 209
LEU CD1 HD12 sing N N 210
LEU CD1 HD13 sing N N 211
LEU CD2 HD21 sing N N 212
LEU CD2 HD22 sing N N 213
LEU CD2 HD23 sing N N 214
LEU OXT HXT sing N N 215
LYS N CA sing N N 216
LYS N H sing N N 217
LYS N H2 sing N N 218
LYS CA C sing N N 219
LYS CA CB sing N N 220
LYS CA HA sing N N 221
LYS C O doub N N 222
LYS C OXT sing N N 223
LYS CB CG sing N N 224
LYS CB HB2 sing N N 225
LYS CB HB3 sing N N 226
LYS CG CD sing N N 227
LYS CG HG2 sing N N 228
LYS CG HG3 sing N N 229
LYS CD CE sing N N 230
LYS CD HD2 sing N N 231
LYS CD HD3 sing N N 232
LYS CE NZ sing N N 233
LYS CE HE2 sing N N 234
LYS CE HE3 sing N N 235
LYS NZ HZ1 sing N N 236
LYS NZ HZ2 sing N N 237
LYS NZ HZ3 sing N N 238
LYS OXT HXT sing N N 239
MAN C1 C2 sing N N 240
MAN C1 O1 sing N N 241
MAN C1 O5 sing N N 242
MAN C1 H1 sing N N 243
MAN C2 C3 sing N N 244
MAN C2 O2 sing N N 245
MAN C2 H2 sing N N 246
MAN C3 C4 sing N N 247
MAN C3 O3 sing N N 248
MAN C3 H3 sing N N 249
MAN C4 C5 sing N N 250
MAN C4 O4 sing N N 251
MAN C4 H4 sing N N 252
MAN C5 C6 sing N N 253
MAN C5 O5 sing N N 254
MAN C5 H5 sing N N 255
MAN C6 O6 sing N N 256
MAN C6 H61 sing N N 257
MAN C6 H62 sing N N 258
MAN O1 HO1 sing N N 259
MAN O2 HO2 sing N N 260
MAN O3 HO3 sing N N 261
MAN O4 HO4 sing N N 262
MAN O6 HO6 sing N N 263
MET N CA sing N N 264
MET N H sing N N 265
MET N H2 sing N N 266
MET CA C sing N N 267
MET CA CB sing N N 268
MET CA HA sing N N 269
MET C O doub N N 270
MET C OXT sing N N 271
MET CB CG sing N N 272
MET CB HB2 sing N N 273
MET CB HB3 sing N N 274
MET CG SD sing N N 275
MET CG HG2 sing N N 276
MET CG HG3 sing N N 277
MET SD CE sing N N 278
MET CE HE1 sing N N 279
MET CE HE2 sing N N 280
MET CE HE3 sing N N 281
MET OXT HXT sing N N 282
NAG C1 C2 sing N N 283
NAG C1 O1 sing N N 284
NAG C1 O5 sing N N 285
NAG C1 H1 sing N N 286
NAG C2 C3 sing N N 287
NAG C2 N2 sing N N 288
NAG C2 H2 sing N N 289
NAG C3 C4 sing N N 290
NAG C3 O3 sing N N 291
NAG C3 H3 sing N N 292
NAG C4 C5 sing N N 293
NAG C4 O4 sing N N 294
NAG C4 H4 sing N N 295
NAG C5 C6 sing N N 296
NAG C5 O5 sing N N 297
NAG C5 H5 sing N N 298
NAG C6 O6 sing N N 299
NAG C6 H61 sing N N 300
NAG C6 H62 sing N N 301
NAG C7 C8 sing N N 302
NAG C7 N2 sing N N 303
NAG C7 O7 doub N N 304
NAG C8 H81 sing N N 305
NAG C8 H82 sing N N 306
NAG C8 H83 sing N N 307
NAG N2 HN2 sing N N 308
NAG O1 HO1 sing N N 309
NAG O3 HO3 sing N N 310
NAG O4 HO4 sing N N 311
NAG O6 HO6 sing N N 312
PHE N CA sing N N 313
PHE N H sing N N 314
PHE N H2 sing N N 315
PHE CA C sing N N 316
PHE CA CB sing N N 317
PHE CA HA sing N N 318
PHE C O doub N N 319
PHE C OXT sing N N 320
PHE CB CG sing N N 321
PHE CB HB2 sing N N 322
PHE CB HB3 sing N N 323
PHE CG CD1 doub Y N 324
PHE CG CD2 sing Y N 325
PHE CD1 CE1 sing Y N 326
PHE CD1 HD1 sing N N 327
PHE CD2 CE2 doub Y N 328
PHE CD2 HD2 sing N N 329
PHE CE1 CZ doub Y N 330
PHE CE1 HE1 sing N N 331
PHE CE2 CZ sing Y N 332
PHE CE2 HE2 sing N N 333
PHE CZ HZ sing N N 334
PHE OXT HXT sing N N 335
PRO N CA sing N N 336
PRO N CD sing N N 337
PRO N H sing N N 338
PRO CA C sing N N 339
PRO CA CB sing N N 340
PRO CA HA sing N N 341
PRO C O doub N N 342
PRO C OXT sing N N 343
PRO CB CG sing N N 344
PRO CB HB2 sing N N 345
PRO CB HB3 sing N N 346
PRO CG CD sing N N 347
PRO CG HG2 sing N N 348
PRO CG HG3 sing N N 349
PRO CD HD2 sing N N 350
PRO CD HD3 sing N N 351
PRO OXT HXT sing N N 352
SER N CA sing N N 353
SER N H sing N N 354
SER N H2 sing N N 355
SER CA C sing N N 356
SER CA CB sing N N 357
SER CA HA sing N N 358
SER C O doub N N 359
SER C OXT sing N N 360
SER CB OG sing N N 361
SER CB HB2 sing N N 362
SER CB HB3 sing N N 363
SER OG HG sing N N 364
SER OXT HXT sing N N 365
THR N CA sing N N 366
THR N H sing N N 367
THR N H2 sing N N 368
THR CA C sing N N 369
THR CA CB sing N N 370
THR CA HA sing N N 371
THR C O doub N N 372
THR C OXT sing N N 373
THR CB OG1 sing N N 374
THR CB CG2 sing N N 375
THR CB HB sing N N 376
THR OG1 HG1 sing N N 377
THR CG2 HG21 sing N N 378
THR CG2 HG22 sing N N 379
THR CG2 HG23 sing N N 380
THR OXT HXT sing N N 381
TRP N CA sing N N 382
TRP N H sing N N 383
TRP N H2 sing N N 384
TRP CA C sing N N 385
TRP CA CB sing N N 386
TRP CA HA sing N N 387
TRP C O doub N N 388
TRP C OXT sing N N 389
TRP CB CG sing N N 390
TRP CB HB2 sing N N 391
TRP CB HB3 sing N N 392
TRP CG CD1 doub Y N 393
TRP CG CD2 sing Y N 394
TRP CD1 NE1 sing Y N 395
TRP CD1 HD1 sing N N 396
TRP CD2 CE2 doub Y N 397
TRP CD2 CE3 sing Y N 398
TRP NE1 CE2 sing Y N 399
TRP NE1 HE1 sing N N 400
TRP CE2 CZ2 sing Y N 401
TRP CE3 CZ3 doub Y N 402
TRP CE3 HE3 sing N N 403
TRP CZ2 CH2 doub Y N 404
TRP CZ2 HZ2 sing N N 405
TRP CZ3 CH2 sing Y N 406
TRP CZ3 HZ3 sing N N 407
TRP CH2 HH2 sing N N 408
TRP OXT HXT sing N N 409
TYR N CA sing N N 410
TYR N H sing N N 411
TYR N H2 sing N N 412
TYR CA C sing N N 413
TYR CA CB sing N N 414
TYR CA HA sing N N 415
TYR C O doub N N 416
TYR C OXT sing N N 417
TYR CB CG sing N N 418
TYR CB HB2 sing N N 419
TYR CB HB3 sing N N 420
TYR CG CD1 doub Y N 421
TYR CG CD2 sing Y N 422
TYR CD1 CE1 sing Y N 423
TYR CD1 HD1 sing N N 424
TYR CD2 CE2 doub Y N 425
TYR CD2 HD2 sing N N 426
TYR CE1 CZ doub Y N 427
TYR CE1 HE1 sing N N 428
TYR CE2 CZ sing Y N 429
TYR CE2 HE2 sing N N 430
TYR CZ OH sing N N 431
TYR OH HH sing N N 432
TYR OXT HXT sing N N 433
VAL N CA sing N N 434
VAL N H sing N N 435
VAL N H2 sing N N 436
VAL CA C sing N N 437
VAL CA CB sing N N 438
VAL CA HA sing N N 439
VAL C O doub N N 440
VAL C OXT sing N N 441
VAL CB CG1 sing N N 442
VAL CB CG2 sing N N 443
VAL CB HB sing N N 444
VAL CG1 HG11 sing N N 445
VAL CG1 HG12 sing N N 446
VAL CG1 HG13 sing N N 447
VAL CG2 HG21 sing N N 448
VAL CG2 HG22 sing N N 449
VAL CG2 HG23 sing N N 450
VAL OXT HXT sing N N 451
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
2 BMA 3 n
3 NAG 1 n
3 NAG 2 n
3 BMA 3 n
3 MAN 4 n
4 NAG 1 n
4 NAG 2 n
4 BMA 3 n
4 MAN 4 n
#
_pdbx_reflns_twin.domain_id 1
_pdbx_reflns_twin.crystal_id 1
_pdbx_reflns_twin.diffrn_id 1
_pdbx_reflns_twin.fraction 0.080
_pdbx_reflns_twin.operator k,h,-l
_pdbx_reflns_twin.type ?
_pdbx_reflns_twin.mean_F_square_over_mean_F2 ?
_pdbx_reflns_twin.mean_I2_over_mean_I_square ?
#
_atom_sites.entry_id 4OIB
_atom_sites.fract_transf_matrix[1][1] 0.004375
_atom_sites.fract_transf_matrix[1][2] 0.002526
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.005052
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.014290
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_