HEADER    HYDROLASE                               21-JAN-14   4OJX              
TITLE     CRYSTAL STRUCTURE OF YEAST PHOSPHODIESTERASE-1 IN COMPLEX WITH GMP    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 3',5'-CYCLIC-NUCLEOTIDE PHOSPHODIESTERASE 1;               
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: PDEASE 1,3':5'-CNP,LOW-AFFINITY CAMP PHOSPHODIESTERASE;     
COMPND   5 EC: 3.1.4.17;                                                        
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C;                 
SOURCE   3 ORGANISM_TAXID: 559292;                                              
SOURCE   4 STRAIN: ATCC 204508 / S288C;                                         
SOURCE   5 GENE: PDE1, YGL248W, NRB369;                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET28A                                    
KEYWDS    PHOSPHODIESTERASE, CGMP AND CAMP, YEAST PDE, DUAL SPECIFICITY,        
KEYWDS   2 HYDROLASE                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.TIAN,W.CUI,M.HUANG,H.ROBINSON,Y.WAN,Y.WANG,H.KE                     
REVDAT   4   28-FEB-24 4OJX    1       REMARK                                   
REVDAT   3   20-APR-22 4OJX    1       COMPND SOURCE REMARK HET                 
REVDAT   3 2                   1       HETNAM FORMUL LINK   SITE                
REVDAT   3 3                   1       ATOM                                     
REVDAT   2   01-JUL-15 4OJX    1       JRNL                                     
REVDAT   1   03-DEC-14 4OJX    0                                                
JRNL        AUTH   Y.TIAN,W.CUI,M.HUANG,H.ROBINSON,Y.WAN,Y.WANG,H.KE            
JRNL        TITL   DUAL SPECIFICITY AND NOVEL STRUCTURAL FOLDING OF YEAST       
JRNL        TITL 2 PHOSPHODIESTERASE-1 FOR HYDROLYSIS OF SECOND MESSENGERS      
JRNL        TITL 3 CYCLIC ADENOSINE AND GUANOSINE 3',5'-MONOPHOSPHATE.          
JRNL        REF    BIOCHEMISTRY                  V.  53  4938 2014              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   25050706                                                     
JRNL        DOI    10.1021/BI500406H                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.31 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.6.0117                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.34                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 93308                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.169                           
REMARK   3   R VALUE            (WORKING SET) : 0.168                           
REMARK   3   FREE R VALUE                     : 0.179                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 4910                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.31                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.34                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 6318                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 95.58                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3020                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 317                          
REMARK   3   BIN FREE R VALUE                    : 0.2990                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2913                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 34                                      
REMARK   3   SOLVENT ATOMS            : 215                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 19.23                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.01000                                             
REMARK   3    B22 (A**2) : 0.06000                                              
REMARK   3    B33 (A**2) : -0.06000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.050         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.044         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.024         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.215         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.967                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.966                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3021 ; 0.008 ; 0.020       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4087 ; 1.250 ; 1.987       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   361 ; 6.431 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   135 ;36.912 ;24.444       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   537 ;10.344 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    15 ;18.110 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   460 ; 0.086 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2242 ; 0.006 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  3021 ; 2.588 ; 3.000       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):    60 ;14.527 ; 5.000       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  3103 ; 6.219 ; 5.000       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN    
REMARK   3  THE INPUT                                                           
REMARK   4                                                                      
REMARK   4 4OJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000084586.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 05-OCT-13                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X29A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.05                               
REMARK 200  MONOCHROMATOR                  : MIRROR                             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 98268                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.310                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 34.340                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.3                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 49.57                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: THE NATIVE CRYSTAL OF YPDE1 (6 MG/ML)    
REMARK 280  WAS GROWN BY HANGING DROP AGAINST A BUFFER OF 20 MM HEPES PH 7.5,   
REMARK 280  5% PEG3350, 40 MM LI SULFATE, AND 12% MPD AT ROOM TEMPERATURE,      
REMARK 280  OR A SIMILAR BUFFER BUT 15% GLYCEROL AND 20% MPD, VAPOR             
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 298K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       65.41800            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       65.41800            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       36.83700            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       42.58100            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       36.83700            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       42.58100            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       65.41800            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       36.83700            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       42.58100            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       65.41800            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       36.83700            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       42.58100            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 27490 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000      -65.41800            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ARG A    55                                                      
REMARK 465     ASN A    56                                                      
REMARK 465     GLU A    57                                                      
REMARK 465     ASN A    58                                                      
REMARK 465     GLU A    59                                                      
REMARK 465     GLY A    60                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A   569     O    HOH A   708              2.14            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    HIS A 160   CG    HIS A 160   CD2     0.054                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A  29      -35.56     75.87                                   
REMARK 500    ASP A  39      176.90     64.69                                   
REMARK 500    SER A  67      -66.29   -139.74                                   
REMARK 500    PHE A  68       17.95     83.24                                   
REMARK 500    TYR A  69     -114.84   -110.15                                   
REMARK 500    LEU A 173      -59.80   -121.33                                   
REMARK 500    HIS A 213       49.31   -147.07                                   
REMARK 500    ARG A 250      -85.36    -18.14                                   
REMARK 500    SER A 286       95.70      9.15                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 403  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A 128   NE2                                                    
REMARK 620 2 HIS A 130   ND1  90.6                                              
REMARK 620 3 HIS A 213   NE2  93.3  95.5                                        
REMARK 620 4 ASP A 244   OD2  88.3 170.1  94.4                                  
REMARK 620 5 5GP A 402   O2P 173.6  95.7  87.2  85.3                            
REMARK 620 6 HOH A 501   O    96.1 102.0 160.0  68.4  81.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 404  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 132   OD2                                                    
REMARK 620 2 HIS A 133   NE2  84.8                                              
REMARK 620 3 ASP A 244   OD2 159.2  94.2                                        
REMARK 620 4 HIS A 326   NE2  98.9 110.9 100.9                                  
REMARK 620 5 5GP A 402   O3P  87.5 162.6  87.5  85.7                            
REMARK 620 6 HOH A 501   O    88.8  93.3  70.5 155.1  70.9                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 402                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4OJV   RELATED DB: PDB                                   
DBREF  4OJX A    1   369  UNP    P22434   PDE1_YEAST       1    369             
SEQRES   1 A  369  MET VAL VAL PHE GLU ILE THR ILE LEU GLY ALA ASN GLY          
SEQRES   2 A  369  GLY PRO THR GLU TYR GLY THR GLN CYS PHE ILE LEU LYS          
SEQRES   3 A  369  PRO ALA ARG THR GLU ASP PRO GLU LEU ILE ALA VAL ASP          
SEQRES   4 A  369  GLY GLY ALA GLY MET TYR GLN LEU ARG GLU MET LEU VAL          
SEQRES   5 A  369  GLN GLY ARG ASN GLU ASN GLU GLY ASP ASP GLU LEU VAL          
SEQRES   6 A  369  PRO SER PHE TYR GLU HIS ASP ARG GLU PRO ILE GLU PHE          
SEQRES   7 A  369  PHE ILE ASP SER LYS LEU ASN ILE GLN LYS GLY LEU SER          
SEQRES   8 A  369  LYS SER LEU LEU GLN SER LEU LYS ARG GLN GLY GLU HIS          
SEQRES   9 A  369  PHE GLU SER ALA ASN THR MET LYS LYS THR TYR GLU VAL          
SEQRES  10 A  369  PHE GLN GLY ILE THR ASP TYR TYR ILE THR HIS PRO HIS          
SEQRES  11 A  369  LEU ASP HIS ILE SER GLY LEU VAL VAL ASN SER PRO SER          
SEQRES  12 A  369  ILE TYR GLU GLN GLU ASN SER LYS LYS LYS THR ILE TRP          
SEQRES  13 A  369  GLY LEU PRO HIS THR ILE ASP VAL LEU GLN LYS HIS VAL          
SEQRES  14 A  369  PHE ASN ASP LEU ILE TRP PRO ASP LEU THR ALA GLU ARG          
SEQRES  15 A  369  SER ARG LYS LEU LYS LEU LYS CYS LEU ASN PRO LYS GLU          
SEQRES  16 A  369  VAL GLN LYS CYS THR ILE PHE PRO TRP ASP VAL ILE PRO          
SEQRES  17 A  369  PHE LYS VAL HIS HIS GLY ILE GLY VAL LYS THR GLY ALA          
SEQRES  18 A  369  PRO VAL TYR SER THR PHE TYR ILE PHE ARG ASP ARG LYS          
SEQRES  19 A  369  SER LYS ASP CYS ILE ILE VAL CYS GLY ASP VAL GLU GLN          
SEQRES  20 A  369  ASP ARG ARG GLU SER GLU GLU SER LEU LEU GLU GLU PHE          
SEQRES  21 A  369  TRP SER TYR VAL ALA GLU ASN ILE PRO LEU VAL HIS LEU          
SEQRES  22 A  369  LYS GLY ILE LEU VAL GLU CYS SER CYS PRO LEU SER SER          
SEQRES  23 A  369  LYS PRO GLU GLN LEU TYR GLY HIS LEU SER PRO ILE TYR          
SEQRES  24 A  369  LEU ILE ASN GLU LEU SER ASN LEU ASN THR LEU TYR ASN          
SEQRES  25 A  369  SER SER LYS GLY LEU SER GLY LEU ASN VAL ILE VAL THR          
SEQRES  26 A  369  HIS VAL LYS SER THR PRO ALA LYS ARG ASP PRO ARG LEU          
SEQRES  27 A  369  THR ILE LEU GLU GLU LEU ARG PHE LEU ALA GLU GLU ARG          
SEQRES  28 A  369  ASN LEU GLY ASP LEU ARG ILE SER ILE ALA LEU GLU GLY          
SEQRES  29 A  369  HIS THR LEU PHE LEU                                          
HET    MPD  A 401       8                                                       
HET    5GP  A 402      24                                                       
HET     ZN  A 403       1                                                       
HET     ZN  A 404       1                                                       
HETNAM     MPD (4S)-2-METHYL-2,4-PENTANEDIOL                                    
HETNAM     5GP GUANOSINE-5'-MONOPHOSPHATE                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2  MPD    C6 H14 O2                                                    
FORMUL   3  5GP    C10 H14 N5 O8 P                                              
FORMUL   4   ZN    2(ZN 2+)                                                     
FORMUL   6  HOH   *215(H2 O)                                                    
HELIX    1   1 GLY A   43  GLY A   54  1                                  12    
HELIX    2   2 GLU A   77  ILE A   80  5                                   4    
HELIX    3   3 SER A   91  SER A   97  1                                   7    
HELIX    4   4 GLN A  101  ALA A  108  1                                   8    
HELIX    5   5 ASN A  109  GLY A  120  1                                  12    
HELIX    6   6 HIS A  130  HIS A  133  5                                   4    
HELIX    7   7 ILE A  134  SER A  141  1                                   8    
HELIX    8   8 PRO A  142  GLU A  146  5                                   5    
HELIX    9   9 LEU A  158  VAL A  169  1                                  12    
HELIX   10  10 ASP A  177  GLU A  181  5                                   5    
HELIX   11  11 SER A  255  ILE A  268  1                                  14    
HELIX   12  12 PRO A  269  VAL A  271  5                                   3    
HELIX   13  13 LYS A  287  TYR A  292  1                                   6    
HELIX   14  14 SER A  296  ASN A  312  1                                  17    
HELIX   15  15 ASP A  335  ARG A  351  1                                  17    
SHEET    1   A 8 ILE A  86  LYS A  88  0                                        
SHEET    2   A 8 HIS A 365  PHE A 368 -1  O  THR A 366   N  GLN A  87           
SHEET    3   A 8 PHE A   4  GLY A  10 -1  N  ILE A   8   O  HIS A 365           
SHEET    4   A 8 CYS A  22  PRO A  27 -1  O  ILE A  24   N  THR A   7           
SHEET    5   A 8 LEU A  35  VAL A  38 -1  O  VAL A  38   N  PHE A  23           
SHEET    6   A 8 ILE A 121  TYR A 125  1  O  ASP A 123   N  ALA A  37           
SHEET    7   A 8 LYS A 153  GLY A 157  1  O  TRP A 156   N  TYR A 124           
SHEET    8   A 8 LEU A 186  CYS A 190  1  O  LYS A 187   N  ILE A 155           
SHEET    1   B 2 LEU A  64  PRO A  66  0                                        
SHEET    2   B 2 ARG A  73  PRO A  75 -1  O  GLU A  74   N  VAL A  65           
SHEET    1   C 7 GLN A 197  LYS A 198  0                                        
SHEET    2   C 7 TRP A 204  ILE A 215 -1  O  VAL A 206   N  GLN A 197           
SHEET    3   C 7 PRO A 222  ASP A 232 -1  O  VAL A 223   N  HIS A 213           
SHEET    4   C 7 CYS A 238  CYS A 242 -1  O  VAL A 241   N  TYR A 228           
SHEET    5   C 7 LEU A 273  GLU A 279  1  O  LEU A 277   N  ILE A 240           
SHEET    6   C 7 ASN A 321  THR A 325  1  O  ILE A 323   N  ILE A 276           
SHEET    7   C 7 ARG A 357  ILE A 360  1  O  SER A 359   N  VAL A 324           
LINK         NE2 HIS A 128                ZN    ZN A 403     1555   1555  2.18  
LINK         ND1 HIS A 130                ZN    ZN A 403     1555   1555  2.17  
LINK         OD2 ASP A 132                ZN    ZN A 404     1555   1555  2.15  
LINK         NE2 HIS A 133                ZN    ZN A 404     1555   1555  2.11  
LINK         NE2 HIS A 213                ZN    ZN A 403     1555   1555  2.14  
LINK         OD2 ASP A 244                ZN    ZN A 403     1555   1555  2.24  
LINK         OD2 ASP A 244                ZN    ZN A 404     1555   1555  2.12  
LINK         NE2 HIS A 326                ZN    ZN A 404     1555   1555  2.10  
LINK         O2P 5GP A 402                ZN    ZN A 403     1555   1555  2.21  
LINK         O3P 5GP A 402                ZN    ZN A 404     1555   1555  2.31  
LINK        ZN    ZN A 403                 O   HOH A 501     1555   1555  2.00  
LINK        ZN    ZN A 404                 O   HOH A 501     1555   1555  2.01  
CISPEP   1 GLY A   14    PRO A   15          0         6.60                     
SITE     1 AC1  7 ASN A  12  PRO A  66  SER A  67  TYR A  69                    
SITE     2 AC1  7 SER A 329  ARG A 337  HOH A 599                               
SITE     1 AC2 19 HIS A 130  ASP A 132  TYR A 145  TRP A 175                    
SITE     2 AC2 19 PRO A 176  HIS A 213  VAL A 217  ASP A 244                    
SITE     3 AC2 19 GLU A 289  HIS A 294  HIS A 326  LYS A 328                    
SITE     4 AC2 19  ZN A 403   ZN A 404  HOH A 501  HOH A 515                    
SITE     5 AC2 19 HOH A 541  HOH A 607  HOH A 706                               
SITE     1 AC3  7 HIS A 128  HIS A 130  HIS A 213  ASP A 244                    
SITE     2 AC3  7 5GP A 402   ZN A 404  HOH A 501                               
SITE     1 AC4  7 ASP A 132  HIS A 133  ASP A 244  HIS A 326                    
SITE     2 AC4  7 5GP A 402   ZN A 403  HOH A 501                               
CRYST1   73.674   85.162  130.836  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.013573  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.011742  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007643        0.00000