HEADER TRANSFERASE 24-JAN-14 4OLL TITLE CAMP-BINDING ACYLTRANSFERASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE PAT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GCN5-RELATED N-ACETYLTRANSFERASE, GNAT, PROTEIN COMPND 5 ACETYLTRANSFERASE, PAT; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_5458, MSMEI_5308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS ALPHA-BETA FOLD, LINKER PEPTIDE, CYCLIC NUCLEOTIDE BINDING DOMAIN, KEYWDS 2 ACYL-TRANSFERASE DOMAIN, APO-ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PODOBNIK,K.REBOLJ,S.S.VISWESWARIAH REVDAT 3 22-NOV-17 4OLL 1 REMARK REVDAT 2 18-JUN-14 4OLL 1 JRNL REVDAT 1 30-APR-14 4OLL 0 JRNL AUTH M.PODOBNIK,N.SIDDIQUI,K.REBOLJ,S.NAMBI,F.MERZEL, JRNL AUTH 2 S.S.VISWESWARIAH JRNL TITL ALLOSTERY AND CONFORMATIONAL DYNAMICS IN CAMP-BINDING JRNL TITL 2 ACYLTRANSFERASES. JRNL REF J.BIOL.CHEM. V. 289 16588 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24748621 JRNL DOI 10.1074/JBC.M114.560086 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.181 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2522 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3431 ; 1.851 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.212 ;22.261 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;17.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.535 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1919 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9998 23.0205 17.4824 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.2055 REMARK 3 T33: 0.1414 T12: -0.0071 REMARK 3 T13: -0.0118 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.1651 L22: 1.3417 REMARK 3 L33: 1.4280 L12: 0.1596 REMARK 3 L13: -0.0817 L23: -0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.3795 S13: 0.1343 REMARK 3 S21: 0.2384 S22: -0.0217 S23: -0.1086 REMARK 3 S31: -0.1136 S32: 0.1136 S33: -0.0834 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5206 2.8931 11.2009 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.0922 REMARK 3 T33: 0.1241 T12: 0.0138 REMARK 3 T13: -0.0021 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.5035 L22: 4.2019 REMARK 3 L33: 1.3930 L12: 1.3120 REMARK 3 L13: -0.6084 L23: -0.9261 REMARK 3 S TENSOR REMARK 3 S11: -0.1553 S12: 0.0115 S13: -0.0727 REMARK 3 S21: -0.2684 S22: 0.0466 S23: -0.0597 REMARK 3 S31: 0.3695 S32: 0.0345 S33: 0.1087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8002 -5.0896 0.7054 REMARK 3 T TENSOR REMARK 3 T11: 0.6313 T22: 0.0203 REMARK 3 T33: 0.0178 T12: 0.0075 REMARK 3 T13: 0.0357 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.2938 L22: 3.4849 REMARK 3 L33: 2.9962 L12: 0.6175 REMARK 3 L13: -0.1888 L23: -2.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.0627 S13: -0.0627 REMARK 3 S21: -1.1204 S22: 0.0203 S23: -0.0917 REMARK 3 S31: 1.3581 S32: 0.0073 S33: 0.0862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4OLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97500 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL FIXED REMARK 200 EXIT REMARK 200 OPTICS : CMOS HYBRID-PIXEL TECHNOLOGY REMARK 200 OPERATING IN DINGLE PHOTON REMARK 200 COUTING MODE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 65.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, BIS-TRIS, CACL2, DAPD, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.15250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.75700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.75700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.15250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 MSE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASN A 0 REMARK 465 PRO A 80 REMARK 465 GLY A 81 REMARK 465 LEU A 167 REMARK 465 ASN A 168 REMARK 465 GLY A 169 REMARK 465 PRO A 170 REMARK 465 VAL A 171 REMARK 465 GLU A 172 REMARK 465 PHE A 173 REMARK 465 SER A 174 REMARK 465 SER A 175 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 LEU A 178 REMARK 465 ASP A 294 REMARK 465 LEU A 295 REMARK 465 GLY A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 595 O HOH A 621 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 108 CE2 TRP A 108 CD2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 76 -103.31 -132.39 REMARK 500 ASP A 77 123.17 136.02 REMARK 500 ILE A 78 52.36 -111.72 REMARK 500 ARG A 180 -78.78 -94.20 REMARK 500 PHE A 182 22.38 -79.48 REMARK 500 GLN A 183 14.58 -66.86 REMARK 500 ASN A 229 15.17 59.08 REMARK 500 ALA A 236 107.83 -162.91 REMARK 500 PRO A 311 46.41 -72.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 401 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 HOH A 554 O 91.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ONU RELATED DB: PDB REMARK 900 RELATED ID: 4ORF RELATED DB: PDB DBREF 4OLL A -4 333 UNP A0R3F9 PAT_MYCS2 1 333 SEQADV 4OLL GLY A -6 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL ALA A -5 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL ASP A -3 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL PRO A -2 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL GLY A -1 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL ASN A 0 UNP A0R3F9 EXPRESSION TAG SEQADV 4OLL VAL A 1 UNP A0R3F9 EXPRESSION TAG SEQRES 1 A 340 GLY ALA MSE ASP PRO GLY ASN VAL ALA GLU LEU THR GLU SEQRES 2 A 340 VAL ARG ALA ALA ASP LEU ALA ALA LEU GLU PHE PHE THR SEQRES 3 A 340 GLY CYS ARG PRO SER ALA LEU GLU PRO LEU ALA THR GLN SEQRES 4 A 340 LEU ARG PRO LEU LYS ALA GLU PRO GLY GLN VAL LEU ILE SEQRES 5 A 340 ARG GLN GLY ASP PRO ALA LEU THR PHE MSE LEU ILE GLU SEQRES 6 A 340 SER GLY ARG VAL GLN VAL SER HIS ALA VAL ALA ASP GLY SEQRES 7 A 340 PRO PRO ILE VAL LEU ASP ILE GLU PRO GLY LEU ILE ILE SEQRES 8 A 340 GLY GLU ILE ALA LEU LEU ARG ASP ALA PRO ARG THR ALA SEQRES 9 A 340 THR VAL VAL ALA ALA GLU PRO VAL ILE GLY TRP VAL GLY SEQRES 10 A 340 ASP ARG ASP ALA PHE ASP THR ILE LEU HIS LEU PRO GLY SEQRES 11 A 340 MSE PHE ASP ARG LEU VAL ARG ILE ALA ARG GLN ARG LEU SEQRES 12 A 340 ALA ALA PHE ILE THR PRO ILE PRO VAL GLN VAL ARG THR SEQRES 13 A 340 GLY GLU TRP PHE TYR LEU ARG PRO VAL LEU PRO GLY ASP SEQRES 14 A 340 VAL GLU ARG THR LEU ASN GLY PRO VAL GLU PHE SER SER SEQRES 15 A 340 GLU THR LEU TYR ARG ARG PHE GLN SER VAL ARG LYS PRO SEQRES 16 A 340 THR ARG ALA LEU LEU GLU TYR LEU PHE GLU VAL ASP TYR SEQRES 17 A 340 ALA ASP HIS PHE VAL TRP VAL MSE THR GLU GLY ALA LEU SEQRES 18 A 340 GLY PRO VAL ILE ALA ASP ALA ARG PHE VAL ARG GLU GLY SEQRES 19 A 340 HIS ASN ALA THR MSE ALA GLU VAL ALA PHE THR VAL GLY SEQRES 20 A 340 ASP ASP TYR GLN GLY ARG GLY ILE GLY SER PHE LEU MSE SEQRES 21 A 340 GLY ALA LEU ILE VAL SER ALA ASN TYR VAL GLY VAL GLN SEQRES 22 A 340 ARG PHE ASN ALA ARG VAL LEU THR ASP ASN MSE ALA MSE SEQRES 23 A 340 ARG LYS ILE MSE ASP ARG LEU GLY ALA VAL TRP VAL ARG SEQRES 24 A 340 GLU ASP LEU GLY VAL VAL MSE THR GLU VAL ASP VAL PRO SEQRES 25 A 340 PRO VAL ASP THR VAL PRO PHE GLU PRO GLU LEU ILE ASP SEQRES 26 A 340 GLN ILE ARG ASP ALA THR ARG LYS VAL ILE ARG ALA VAL SEQRES 27 A 340 SER GLN MODRES 4OLL MSE A 55 MET SELENOMETHIONINE MODRES 4OLL MSE A 124 MET SELENOMETHIONINE MODRES 4OLL MSE A 209 MET SELENOMETHIONINE MODRES 4OLL MSE A 232 MET SELENOMETHIONINE MODRES 4OLL MSE A 253 MET SELENOMETHIONINE MODRES 4OLL MSE A 277 MET SELENOMETHIONINE MODRES 4OLL MSE A 279 MET SELENOMETHIONINE MODRES 4OLL MSE A 283 MET SELENOMETHIONINE MODRES 4OLL MSE A 299 MET SELENOMETHIONINE HET MSE A 55 8 HET MSE A 124 8 HET MSE A 209 8 HET MSE A 232 8 HET MSE A 253 8 HET MSE A 277 8 HET MSE A 279 8 HET MSE A 283 8 HET MSE A 299 8 HET HG A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM MSE SELENOMETHIONINE HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 HG HG 2+ FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *171(H2 O) HELIX 1 1 GLU A 3 ALA A 14 1 12 HELIX 2 2 LEU A 15 THR A 19 5 5 HELIX 3 3 ARG A 22 ALA A 25 5 4 HELIX 4 4 LEU A 26 THR A 31 1 6 HELIX 5 5 GLY A 85 ASP A 92 1 8 HELIX 6 6 ASP A 111 LEU A 121 1 11 HELIX 7 7 GLY A 123 ALA A 138 1 16 HELIX 8 8 ASP A 162 THR A 166 5 5 HELIX 9 9 THR A 189 VAL A 199 1 11 HELIX 10 10 ASP A 241 GLN A 244 5 4 HELIX 11 11 GLY A 247 GLY A 264 1 18 HELIX 12 12 ASN A 276 ARG A 285 1 10 HELIX 13 13 PRO A 306 VAL A 310 5 5 HELIX 14 14 GLU A 313 VAL A 331 1 19 SHEET 1 A 4 ARG A 34 ALA A 38 0 SHEET 2 A 4 VAL A 105 GLY A 110 -1 O VAL A 109 N ARG A 34 SHEET 3 A 4 PHE A 54 SER A 59 -1 N GLU A 58 O ILE A 106 SHEET 4 A 4 ILE A 83 ILE A 84 -1 O ILE A 84 N MSE A 55 SHEET 1 B 4 VAL A 43 ILE A 45 0 SHEET 2 B 4 THR A 98 ALA A 101 -1 O VAL A 99 N LEU A 44 SHEET 3 B 4 VAL A 62 HIS A 66 -1 N SER A 65 O THR A 98 SHEET 4 B 4 ILE A 74 VAL A 75 -1 O ILE A 74 N HIS A 66 SHEET 1 C 7 ILE A 143 GLN A 146 0 SHEET 2 C 7 TRP A 152 PRO A 157 -1 O PHE A 153 N VAL A 145 SHEET 3 C 7 HIS A 204 THR A 210 -1 O THR A 210 N TYR A 154 SHEET 4 C 7 VAL A 217 ARG A 225 -1 O ALA A 219 N MSE A 209 SHEET 5 C 7 MSE A 232 VAL A 239 -1 O THR A 238 N ASP A 220 SHEET 6 C 7 ARG A 267 VAL A 272 1 O ARG A 267 N ALA A 233 SHEET 7 C 7 VAL A 298 ASP A 303 -1 O VAL A 298 N VAL A 272 LINK C PHE A 54 N MSE A 55 1555 1555 1.36 LINK C MSE A 55 N LEU A 56 1555 1555 1.33 LINK C GLY A 123 N MSE A 124 1555 1555 1.34 LINK C MSE A 124 N PHE A 125 1555 1555 1.35 LINK C VAL A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N THR A 210 1555 1555 1.33 LINK C THR A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N ALA A 233 1555 1555 1.34 LINK C LEU A 252 N MSE A 253 1555 1555 1.34 LINK C MSE A 253 N GLY A 254 1555 1555 1.34 LINK C ASN A 276 N MSE A 277 1555 1555 1.34 LINK C MSE A 277 N ALA A 278 1555 1555 1.34 LINK C ALA A 278 N MSE A 279 1555 1555 1.37 LINK C MSE A 279 N ARG A 280 1555 1555 1.38 LINK C ILE A 282 N MSE A 283 1555 1555 1.38 LINK C MSE A 283 N ASP A 284 1555 1555 1.34 LINK C VAL A 298 N MSE A 299 1555 1555 1.34 LINK C MSE A 299 N THR A 300 1555 1555 1.35 LINK SG CYS A 21 HG HG A 401 1555 1555 2.52 LINK CA CA A 402 O HOH A 513 1555 1555 3.07 LINK HG HG A 401 O HOH A 554 1555 1555 3.07 SITE 1 AC1 2 CYS A 21 HOH A 554 SITE 1 AC2 4 ASP A 92 HIS A 120 ARG A 186 HOH A 513 CRYST1 38.305 82.750 105.514 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009477 0.00000