HEADER OXIDOREDUCTASE 27-JAN-14 4OM8 TITLE CRYSTAL STRUCTURE OF 5-FORMLY-3-HYDROXY-2-METHYLPYRIDINE 4-CARBOXYLIC TITLE 2 ACID (FHMPC) 5-DEHYDROGENASE, AN NAD+ DEPENDENT DISMUTASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYBUTYRYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: MESORHIZOBIUM LOTI: MLR6793, MLR6793; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, DISMUTASE, STRUCTURAL GENOMICS, ENZYME FUNCTION KEYWDS 2 INITIATIVE, ROSSMANN FOLD, NAD-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.N.MUGO,J.KOBAYASHI,B.MIKAMI,T.YAGI,K.OHNISHI REVDAT 3 08-NOV-23 4OM8 1 REMARK LINK REVDAT 2 04-FEB-15 4OM8 1 JRNL REVDAT 1 28-JAN-15 4OM8 0 JRNL AUTH A.N.MUGO,J.KOBAYASHI,B.MIKAMI,Y.YOSHIKANE,T.YAGI,K.OHNISHI JRNL TITL CRYSTAL STRUCTURE OF 5-FORMYL-3-HYDROXY-2-METHYLPYRIDINE JRNL TITL 2 4-CARBOXYLIC ACID 5-DEHYDROGENASE, AN NAD(+)-DEPENDENT JRNL TITL 3 DISMUTASE FROM MESORHIZOBIUM LOTI JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 456 35 2015 JRNL REFN ISSN 0006-291X JRNL PMID 25446130 JRNL DOI 10.1016/J.BBRC.2014.11.028 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 75969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 27 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1784 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2374 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.53000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4OM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4-ACETATE, 0.1M NA-ACETATE PH REMARK 280 5.0, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.40250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.10600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.40250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.10600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -48.53226 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 97.98220 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 756 O HOH B 588 2.04 REMARK 500 O HOH A 576 O HOH A 713 2.11 REMARK 500 O HOH B 548 O HOH B 698 2.14 REMARK 500 OD1 ASP B 108 O HOH B 685 2.16 REMARK 500 OD1 ASP A 108 O HOH A 810 2.16 REMARK 500 CB CYS A 281 S2 BME A 401 2.16 REMARK 500 O HOH A 776 O HOH A 797 2.17 REMARK 500 O HOH A 770 O HOH A 867 2.18 REMARK 500 OD1 ASP B 181 O HOH B 775 2.18 REMARK 500 O HOH A 601 O HOH A 700 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 39 O HOH A 678 4546 2.16 REMARK 500 OD1 ASN B 254 O HOH B 624 2545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 86 45.23 -142.25 REMARK 500 PHE A 185 -124.47 48.92 REMARK 500 ILE A 220 -61.48 -123.78 REMARK 500 VAL B 64 -75.06 -126.78 REMARK 500 ASN B 86 41.84 -145.01 REMARK 500 ASP B 181 58.89 -93.34 REMARK 500 ASP B 181 47.37 -84.50 REMARK 500 PHE B 185 -130.51 51.89 REMARK 500 ILE B 220 -60.89 -125.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 DBREF 4OM8 A 1 309 UNP Q988C8 Q988C8_RHILO 1 309 DBREF 4OM8 B 1 309 UNP Q988C8 Q988C8_RHILO 1 309 SEQRES 1 A 309 MET ILE ARG ASN ILE ALA ILE ILE GLY LEU GLY THR MET SEQRES 2 A 309 GLY PRO GLY MET ALA ALA ARG LEU ALA ARG GLY GLY LEU SEQRES 3 A 309 GLN VAL VAL ALA TYR ASP VAL ALA PRO ALA ALA ILE GLU SEQRES 4 A 309 ARG ALA ARG SER MET LEU SER VAL ALA GLU THR VAL LEU SEQRES 5 A 309 ASP ALA LEU GLY ILE ALA LEU PRO SER ALA GLY VAL GLY SEQRES 6 A 309 THR VAL ARG PHE THR ASP ASP ILE GLY ASP ALA VAL SER SEQRES 7 A 309 GLY ALA ASP LEU VAL ILE GLU ASN VAL PRO GLU ASN ILE SEQRES 8 A 309 SER ILE LYS ALA ASP VAL TYR ARG THR ILE ASP GLY LEU SEQRES 9 A 309 ILE GLY GLN ASP THR ILE VAL ALA SER ASP THR SER GLY SEQRES 10 A 309 ILE PRO ILE THR LYS LEU GLN ALA HIS ILE SER TYR PRO SEQRES 11 A 309 GLU ARG MET VAL GLY MET HIS TRP SER ASN PRO PRO HIS SEQRES 12 A 309 ILE ILE PRO MET ILE GLU VAL ILE ALA GLY GLU LYS THR SEQRES 13 A 309 ALA PRO GLN THR VAL ALA THR ILE ARG ASP LEU ILE ARG SEQRES 14 A 309 SER ILE GLY LEU LEU PRO VAL VAL VAL LYS LYS ASP VAL SEQRES 15 A 309 PRO GLY PHE VAL GLU ASN ARG VAL LEU TYR ALA LEU LEU SEQRES 16 A 309 ARG GLU ALA VAL ASP LEU VAL GLU ARG GLY VAL ILE ASP SEQRES 17 A 309 PRO GLU ASP LEU ASP THR CYS VAL SER TRP GLY ILE GLY SEQRES 18 A 309 TYR LYS ILE ALA VAL ILE GLY PRO MET ALA LEU LEU ASP SEQRES 19 A 309 MET ALA GLY LEU ASP ILE TYR LYS SER VAL SER SER PHE SEQRES 20 A 309 LEU ASN ALA ASP LEU SER ASN ARG ASP ASP VAL ALA PRO SEQRES 21 A 309 MET VAL LEU GLU LYS THR SER ALA SER LYS PHE GLY ILE SEQRES 22 A 309 LYS SER GLY GLU GLY MET PHE CYS TYR THR PRO GLU GLN SEQRES 23 A 309 THR LYS ALA LEU GLN ALA GLU ARG ALA ARG LYS LEU VAL SEQRES 24 A 309 ALA VAL ARG ARG ILE LEU GLU GLY ARG GLU SEQRES 1 B 309 MET ILE ARG ASN ILE ALA ILE ILE GLY LEU GLY THR MET SEQRES 2 B 309 GLY PRO GLY MET ALA ALA ARG LEU ALA ARG GLY GLY LEU SEQRES 3 B 309 GLN VAL VAL ALA TYR ASP VAL ALA PRO ALA ALA ILE GLU SEQRES 4 B 309 ARG ALA ARG SER MET LEU SER VAL ALA GLU THR VAL LEU SEQRES 5 B 309 ASP ALA LEU GLY ILE ALA LEU PRO SER ALA GLY VAL GLY SEQRES 6 B 309 THR VAL ARG PHE THR ASP ASP ILE GLY ASP ALA VAL SER SEQRES 7 B 309 GLY ALA ASP LEU VAL ILE GLU ASN VAL PRO GLU ASN ILE SEQRES 8 B 309 SER ILE LYS ALA ASP VAL TYR ARG THR ILE ASP GLY LEU SEQRES 9 B 309 ILE GLY GLN ASP THR ILE VAL ALA SER ASP THR SER GLY SEQRES 10 B 309 ILE PRO ILE THR LYS LEU GLN ALA HIS ILE SER TYR PRO SEQRES 11 B 309 GLU ARG MET VAL GLY MET HIS TRP SER ASN PRO PRO HIS SEQRES 12 B 309 ILE ILE PRO MET ILE GLU VAL ILE ALA GLY GLU LYS THR SEQRES 13 B 309 ALA PRO GLN THR VAL ALA THR ILE ARG ASP LEU ILE ARG SEQRES 14 B 309 SER ILE GLY LEU LEU PRO VAL VAL VAL LYS LYS ASP VAL SEQRES 15 B 309 PRO GLY PHE VAL GLU ASN ARG VAL LEU TYR ALA LEU LEU SEQRES 16 B 309 ARG GLU ALA VAL ASP LEU VAL GLU ARG GLY VAL ILE ASP SEQRES 17 B 309 PRO GLU ASP LEU ASP THR CYS VAL SER TRP GLY ILE GLY SEQRES 18 B 309 TYR LYS ILE ALA VAL ILE GLY PRO MET ALA LEU LEU ASP SEQRES 19 B 309 MET ALA GLY LEU ASP ILE TYR LYS SER VAL SER SER PHE SEQRES 20 B 309 LEU ASN ALA ASP LEU SER ASN ARG ASP ASP VAL ALA PRO SEQRES 21 B 309 MET VAL LEU GLU LYS THR SER ALA SER LYS PHE GLY ILE SEQRES 22 B 309 LYS SER GLY GLU GLY MET PHE CYS TYR THR PRO GLU GLN SEQRES 23 B 309 THR LYS ALA LEU GLN ALA GLU ARG ALA ARG LYS LEU VAL SEQRES 24 B 309 ALA VAL ARG ARG ILE LEU GLU GLY ARG GLU HET BME A 401 4 HET NAD A 402 44 HET ACT A 403 4 HET ACT A 404 4 HET BME B 401 4 HET NAD B 402 44 HET ACT B 403 4 HET GOL B 404 6 HETNAM BME BETA-MERCAPTOETHANOL HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BME 2(C2 H6 O S) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *678(H2 O) HELIX 1 1 MET A 13 GLY A 24 1 12 HELIX 2 2 ALA A 34 LEU A 55 1 22 HELIX 3 3 ASP A 72 SER A 78 1 7 HELIX 4 4 ASN A 90 GLY A 103 1 14 HELIX 5 5 PRO A 119 GLN A 124 1 6 HELIX 6 6 ALA A 125 ILE A 127 5 3 HELIX 7 7 TYR A 129 GLU A 131 5 3 HELIX 8 8 ALA A 157 ILE A 171 1 15 HELIX 9 9 VAL A 186 ARG A 204 1 19 HELIX 10 10 ASP A 208 ILE A 220 1 13 HELIX 11 11 ILE A 220 ILE A 227 1 8 HELIX 12 12 GLY A 228 GLY A 237 1 10 HELIX 13 13 GLY A 237 LEU A 252 1 16 HELIX 14 14 ALA A 259 ALA A 268 1 10 HELIX 15 15 THR A 283 GLU A 306 1 24 HELIX 16 16 MET B 13 GLY B 24 1 12 HELIX 17 17 ALA B 34 GLY B 56 1 23 HELIX 18 18 ASP B 72 SER B 78 1 7 HELIX 19 19 ASN B 90 GLY B 103 1 14 HELIX 20 20 PRO B 119 ALA B 125 1 7 HELIX 21 21 TYR B 129 GLU B 131 5 3 HELIX 22 22 ALA B 157 ILE B 171 1 15 HELIX 23 23 VAL B 186 ARG B 204 1 19 HELIX 24 24 ASP B 208 ILE B 220 1 13 HELIX 25 25 ILE B 220 ILE B 227 1 8 HELIX 26 26 GLY B 228 GLY B 237 1 10 HELIX 27 27 GLY B 237 LEU B 252 1 16 HELIX 28 28 ALA B 259 ALA B 268 1 10 HELIX 29 29 GLY B 272 GLY B 276 5 5 HELIX 30 30 THR B 283 GLU B 306 1 24 SHEET 1 A 8 THR A 66 THR A 70 0 SHEET 2 A 8 GLN A 27 TYR A 31 1 N ALA A 30 O ARG A 68 SHEET 3 A 8 ASN A 4 ILE A 8 1 N ILE A 5 O GLN A 27 SHEET 4 A 8 LEU A 82 GLU A 85 1 O ILE A 84 N ALA A 6 SHEET 5 A 8 ILE A 110 SER A 113 1 O ALA A 112 N GLU A 85 SHEET 6 A 8 MET A 133 HIS A 137 1 O MET A 136 N SER A 113 SHEET 7 A 8 MET A 147 ILE A 151 -1 O ILE A 151 N GLY A 135 SHEET 8 A 8 LEU A 174 VAL A 178 1 O VAL A 176 N VAL A 150 SHEET 1 B 8 THR B 66 THR B 70 0 SHEET 2 B 8 GLN B 27 TYR B 31 1 N VAL B 28 O THR B 66 SHEET 3 B 8 ASN B 4 ILE B 8 1 N ILE B 5 O GLN B 27 SHEET 4 B 8 LEU B 82 GLU B 85 1 O ILE B 84 N ALA B 6 SHEET 5 B 8 ILE B 110 SER B 113 1 O ALA B 112 N GLU B 85 SHEET 6 B 8 MET B 133 HIS B 137 1 O MET B 136 N SER B 113 SHEET 7 B 8 MET B 147 ILE B 151 -1 O GLU B 149 N HIS B 137 SHEET 8 B 8 LEU B 174 VAL B 178 1 O VAL B 178 N VAL B 150 LINK SG CYS A 281 S2 BME A 401 1555 1555 1.98 LINK CB CYS B 281 S2 BME B 401 1555 1555 1.71 LINK SG CYS B 281 S2 BME B 401 1555 1555 1.99 CISPEP 1 ASN A 140 PRO A 141 0 -0.07 CISPEP 2 ASN B 140 PRO B 141 0 0.65 SITE 1 AC1 5 GLU A 277 CYS A 281 GLN B 159 THR B 160 SITE 2 AC1 5 HOH B 688 SITE 1 AC2 27 ILE A 8 GLY A 11 THR A 12 MET A 13 SITE 2 AC2 27 TYR A 31 ASP A 32 VAL A 33 ALA A 37 SITE 3 AC2 27 ASN A 86 VAL A 87 PRO A 88 GLU A 89 SITE 4 AC2 27 LYS A 94 ASP A 114 THR A 115 SER A 116 SITE 5 AC2 27 TRP A 138 ASN A 140 HOH A 537 HOH A 540 SITE 6 AC2 27 HOH A 574 HOH A 593 HOH A 729 HOH A 731 SITE 7 AC2 27 HOH A 763 HOH A 863 HOH A 893 SITE 1 AC3 7 SER A 116 GLY A 117 GLY A 184 ASN A 188 SITE 2 AC3 7 VAL A 244 HOH A 572 HOH A 828 SITE 1 AC4 2 TYR A 192 ALA A 236 SITE 1 AC5 3 GLY B 276 GLU B 277 CYS B 281 SITE 1 AC6 30 ILE B 8 GLY B 11 THR B 12 MET B 13 SITE 2 AC6 30 TYR B 31 ASP B 32 VAL B 33 ASN B 86 SITE 3 AC6 30 VAL B 87 PRO B 88 GLU B 89 LYS B 94 SITE 4 AC6 30 VAL B 97 ASP B 114 THR B 115 SER B 116 SITE 5 AC6 30 HIS B 137 TRP B 138 ASN B 140 HOH B 569 SITE 6 AC6 30 HOH B 570 HOH B 592 HOH B 596 HOH B 602 SITE 7 AC6 30 HOH B 644 HOH B 694 HOH B 716 HOH B 717 SITE 8 AC6 30 HOH B 761 HOH B 765 SITE 1 AC7 4 TYR B 192 ALA B 236 HOH B 647 HOH B 774 SITE 1 AC8 8 HOH A 640 HOH A 808 MET B 1 ILE B 2 SITE 2 AC8 8 THR B 163 ASP B 166 LEU B 167 SER B 170 CRYST1 122.805 44.212 109.343 90.00 116.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008143 0.000000 0.004033 0.00000 SCALE2 0.000000 0.022618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010206 0.00000