HEADER TRANSPORT PROTEIN 27-JAN-14 4OMJ TITLE CRYSTAL STRUCTURE OF SPF BOUND TO 2,3-OXIDOSQUALENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEC14-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-275; COMPND 5 SYNONYM: ALPHA-TOCOPHEROL-ASSOCIATED PROTEIN, TAP, HTAP, SQUALENE COMPND 6 TRANSFER PROTEIN, SUPERNATANT PROTEIN FACTOR, SPF; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C22ORF6, KIAA1186, KIAA1658, SEC14L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEMO21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CHOLESTEROL SYNTHESIS, SQUALENE, 2, 3-OXIDOSQUALENE, SEC14-LIKE, KEYWDS 2 CRAL-TRIO DOMAIN, HYDROPHOBIC LIGAND TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRISTEN,M.J.MARCAIDA,C.LAMPRAKIS,M.CASCELLA,A.STOCKER REVDAT 3 20-SEP-23 4OMJ 1 REMARK SEQADV REVDAT 2 24-JUN-15 4OMJ 1 JRNL REVDAT 1 15-APR-15 4OMJ 0 JRNL AUTH M.CHRISTEN,M.J.MARCAIDA,C.LAMPRAKIS,W.AESCHIMANN, JRNL AUTH 2 J.VAITHILINGAM,P.SCHNEIDER,M.HILBERT,G.SCHNEIDER,M.CASCELLA, JRNL AUTH 3 A.STOCKER JRNL TITL STRUCTURAL INSIGHTS ON CHOLESTEROL ENDOSYNTHESIS: BINDING OF JRNL TITL 2 SQUALENE AND 2,3-OXIDOSQUALENE TO SUPERNATANT PROTEIN JRNL TITL 3 FACTOR. JRNL REF J.STRUCT.BIOL. V. 190 261 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 25987292 JRNL DOI 10.1016/J.JSB.2015.05.001 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 128780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 6480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8900 - 4.9642 1.00 4230 214 0.1763 0.1793 REMARK 3 2 4.9642 - 3.9431 1.00 4147 203 0.1236 0.1305 REMARK 3 3 3.9431 - 3.4455 1.00 4111 221 0.1317 0.1554 REMARK 3 4 3.4455 - 3.1309 0.99 4084 230 0.1429 0.1628 REMARK 3 5 3.1309 - 2.9067 1.00 4142 196 0.1507 0.1696 REMARK 3 6 2.9067 - 2.7354 1.00 4069 223 0.1461 0.1661 REMARK 3 7 2.7354 - 2.5985 1.00 4127 208 0.1424 0.1799 REMARK 3 8 2.5985 - 2.4854 1.00 4059 231 0.1409 0.1729 REMARK 3 9 2.4854 - 2.3898 1.00 4075 234 0.1422 0.1768 REMARK 3 10 2.3898 - 2.3074 1.00 4060 227 0.1443 0.1641 REMARK 3 11 2.3074 - 2.2353 0.99 4039 241 0.1516 0.1773 REMARK 3 12 2.2353 - 2.1714 0.98 4034 203 0.1502 0.1905 REMARK 3 13 2.1714 - 2.1142 0.99 4057 209 0.1519 0.1763 REMARK 3 14 2.1142 - 2.0627 1.00 4049 219 0.1566 0.1928 REMARK 3 15 2.0627 - 2.0158 1.00 4100 209 0.1579 0.1966 REMARK 3 16 2.0158 - 1.9729 1.00 4065 220 0.1661 0.2071 REMARK 3 17 1.9729 - 1.9334 1.00 4075 199 0.1668 0.2166 REMARK 3 18 1.9334 - 1.8970 1.00 4040 245 0.1747 0.1975 REMARK 3 19 1.8970 - 1.8631 0.99 4090 225 0.2023 0.2417 REMARK 3 20 1.8631 - 1.8315 1.00 4071 237 0.1946 0.2266 REMARK 3 21 1.8315 - 1.8020 1.00 4045 213 0.1884 0.2202 REMARK 3 22 1.8020 - 1.7742 1.00 4068 205 0.1771 0.1917 REMARK 3 23 1.7742 - 1.7482 1.00 4082 201 0.1763 0.1909 REMARK 3 24 1.7482 - 1.7235 1.00 4074 214 0.1761 0.1987 REMARK 3 25 1.7235 - 1.7002 1.00 4095 208 0.1840 0.2331 REMARK 3 26 1.7002 - 1.6782 1.00 4070 206 0.1860 0.2058 REMARK 3 27 1.6782 - 1.6572 1.00 4068 202 0.1955 0.2103 REMARK 3 28 1.6572 - 1.6372 0.99 4000 219 0.2074 0.2356 REMARK 3 29 1.6372 - 1.6182 0.99 4124 211 0.2134 0.2487 REMARK 3 30 1.6182 - 1.6000 0.99 3950 207 0.2157 0.2705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4786 REMARK 3 ANGLE : 1.336 6496 REMARK 3 CHIRALITY : 0.076 686 REMARK 3 PLANARITY : 0.008 831 REMARK 3 DIHEDRAL : 12.395 1926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1O6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULFATE, 0.1 M BIS-TRIS, REMARK 280 1% PEG3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.90000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 275 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN B 32 O HOH B 604 1.50 REMARK 500 HZ2 LYS A 66 O HOH A 546 1.54 REMARK 500 HZ1 LYS B 66 O HOH B 730 1.56 REMARK 500 HZ3 LYS A 216 O HOH A 928 1.58 REMARK 500 OE1 GLU B 226 O HOH B 862 1.94 REMARK 500 O HOH B 583 O HOH B 900 1.94 REMARK 500 O HOH B 786 O HOH B 901 1.97 REMARK 500 NZ LYS A 216 O HOH A 928 1.97 REMARK 500 O HOH A 865 O HOH A 913 1.99 REMARK 500 O HOH A 821 O HOH A 929 2.03 REMARK 500 O HOH B 874 O HOH B 875 2.04 REMARK 500 O HOH A 931 O HOH A 932 2.05 REMARK 500 O HOH B 764 O HOH B 901 2.06 REMARK 500 O HOH A 886 O HOH A 891 2.06 REMARK 500 O HOH A 804 O HOH A 806 2.08 REMARK 500 O HOH A 839 O HOH A 918 2.08 REMARK 500 O HOH B 654 O HOH B 906 2.11 REMARK 500 O HOH B 878 O HOH B 903 2.11 REMARK 500 O HOH A 895 O HOH A 899 2.11 REMARK 500 O HOH B 674 O HOH B 691 2.12 REMARK 500 NH2 ARG B 11 O HOH B 902 2.13 REMARK 500 OE2 GLU A 127 O HOH A 557 2.14 REMARK 500 O HOH A 793 O HOH A 794 2.14 REMARK 500 O HOH A 851 O HOH A 864 2.14 REMARK 500 O HOH B 544 O HOH B 795 2.15 REMARK 500 O HOH B 657 O HOH B 885 2.15 REMARK 500 O HOH B 749 O HOH B 817 2.16 REMARK 500 O HOH B 604 O HOH B 906 2.17 REMARK 500 O HOH B 568 O HOH B 847 2.17 REMARK 500 O HOH B 919 O HOH B 920 2.17 REMARK 500 O HOH B 757 O HOH B 780 2.17 REMARK 500 O HOH A 872 O HOH A 899 2.18 REMARK 500 O HOH A 768 O HOH A 776 2.19 REMARK 500 O HOH A 597 O HOH A 822 2.19 REMARK 500 O HOH A 938 O HOH A 939 2.19 REMARK 500 O HOH A 744 O HOH A 793 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 32 71.00 43.96 REMARK 500 GLU B 147 16.75 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2TX A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2TX B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OLM RELATED DB: PDB REMARK 900 SUPERNATANT PROTEIN FACTOR IN COMPLEX WITH RRR-ALPHA- REMARK 900 TOCOPHERYLQUINONE: A LINK BETWEEN OXIDIZED VITAMIN E AND REMARK 900 CHOLESTEROL BIOSYNTHESIS REMARK 900 RELATED ID: 1O6U RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN SUPERNATANT PROTEIN FACTOR REMARK 900 RELATED ID: 4OMK RELATED DB: PDB DBREF 4OMJ A 1 275 UNP O76054 S14L2_HUMAN 1 275 DBREF 4OMJ B 1 275 UNP O76054 S14L2_HUMAN 1 275 SEQADV 4OMJ GLY A -2 UNP O76054 EXPRESSION TAG SEQADV 4OMJ SER A -1 UNP O76054 EXPRESSION TAG SEQADV 4OMJ HIS A 0 UNP O76054 EXPRESSION TAG SEQADV 4OMJ GLY B -2 UNP O76054 EXPRESSION TAG SEQADV 4OMJ SER B -1 UNP O76054 EXPRESSION TAG SEQADV 4OMJ HIS B 0 UNP O76054 EXPRESSION TAG SEQRES 1 A 278 GLY SER HIS MET SER GLY ARG VAL GLY ASP LEU SER PRO SEQRES 2 A 278 ARG GLN LYS GLU ALA LEU ALA LYS PHE ARG GLU ASN VAL SEQRES 3 A 278 GLN ASP VAL LEU PRO ALA LEU PRO ASN PRO ASP ASP TYR SEQRES 4 A 278 PHE LEU LEU ARG TRP LEU ARG ALA ARG SER PHE ASP LEU SEQRES 5 A 278 GLN LYS SER GLU ALA MET LEU ARG LYS HIS VAL GLU PHE SEQRES 6 A 278 ARG LYS GLN LYS ASP ILE ASP ASN ILE ILE SER TRP GLN SEQRES 7 A 278 PRO PRO GLU VAL ILE GLN GLN TYR LEU SER GLY GLY MET SEQRES 8 A 278 CYS GLY TYR ASP LEU ASP GLY CYS PRO VAL TRP TYR ASP SEQRES 9 A 278 ILE ILE GLY PRO LEU ASP ALA LYS GLY LEU LEU PHE SER SEQRES 10 A 278 ALA SER LYS GLN ASP LEU LEU ARG THR LYS MET ARG GLU SEQRES 11 A 278 CYS GLU LEU LEU LEU GLN GLU CYS ALA HIS GLN THR THR SEQRES 12 A 278 LYS LEU GLY ARG LYS VAL GLU THR ILE THR ILE ILE TYR SEQRES 13 A 278 ASP CYS GLU GLY LEU GLY LEU LYS HIS LEU TRP LYS PRO SEQRES 14 A 278 ALA VAL GLU ALA TYR GLY GLU PHE LEU CYS MET PHE GLU SEQRES 15 A 278 GLU ASN TYR PRO GLU THR LEU LYS ARG LEU PHE VAL VAL SEQRES 16 A 278 LYS ALA PRO LYS LEU PHE PRO VAL ALA TYR ASN LEU ILE SEQRES 17 A 278 LYS PRO PHE LEU SER GLU ASP THR ARG LYS LYS ILE MET SEQRES 18 A 278 VAL LEU GLY ALA ASN TRP LYS GLU VAL LEU LEU LYS HIS SEQRES 19 A 278 ILE SER PRO ASP GLN VAL PRO VAL GLU TYR GLY GLY THR SEQRES 20 A 278 MET THR ASP PRO ASP GLY ASN PRO LYS CYS LYS SER LYS SEQRES 21 A 278 ILE ASN TYR GLY GLY ASP ILE PRO ARG LYS TYR TYR VAL SEQRES 22 A 278 ARG ASP GLN VAL LYS SEQRES 1 B 278 GLY SER HIS MET SER GLY ARG VAL GLY ASP LEU SER PRO SEQRES 2 B 278 ARG GLN LYS GLU ALA LEU ALA LYS PHE ARG GLU ASN VAL SEQRES 3 B 278 GLN ASP VAL LEU PRO ALA LEU PRO ASN PRO ASP ASP TYR SEQRES 4 B 278 PHE LEU LEU ARG TRP LEU ARG ALA ARG SER PHE ASP LEU SEQRES 5 B 278 GLN LYS SER GLU ALA MET LEU ARG LYS HIS VAL GLU PHE SEQRES 6 B 278 ARG LYS GLN LYS ASP ILE ASP ASN ILE ILE SER TRP GLN SEQRES 7 B 278 PRO PRO GLU VAL ILE GLN GLN TYR LEU SER GLY GLY MET SEQRES 8 B 278 CYS GLY TYR ASP LEU ASP GLY CYS PRO VAL TRP TYR ASP SEQRES 9 B 278 ILE ILE GLY PRO LEU ASP ALA LYS GLY LEU LEU PHE SER SEQRES 10 B 278 ALA SER LYS GLN ASP LEU LEU ARG THR LYS MET ARG GLU SEQRES 11 B 278 CYS GLU LEU LEU LEU GLN GLU CYS ALA HIS GLN THR THR SEQRES 12 B 278 LYS LEU GLY ARG LYS VAL GLU THR ILE THR ILE ILE TYR SEQRES 13 B 278 ASP CYS GLU GLY LEU GLY LEU LYS HIS LEU TRP LYS PRO SEQRES 14 B 278 ALA VAL GLU ALA TYR GLY GLU PHE LEU CYS MET PHE GLU SEQRES 15 B 278 GLU ASN TYR PRO GLU THR LEU LYS ARG LEU PHE VAL VAL SEQRES 16 B 278 LYS ALA PRO LYS LEU PHE PRO VAL ALA TYR ASN LEU ILE SEQRES 17 B 278 LYS PRO PHE LEU SER GLU ASP THR ARG LYS LYS ILE MET SEQRES 18 B 278 VAL LEU GLY ALA ASN TRP LYS GLU VAL LEU LEU LYS HIS SEQRES 19 B 278 ILE SER PRO ASP GLN VAL PRO VAL GLU TYR GLY GLY THR SEQRES 20 B 278 MET THR ASP PRO ASP GLY ASN PRO LYS CYS LYS SER LYS SEQRES 21 B 278 ILE ASN TYR GLY GLY ASP ILE PRO ARG LYS TYR TYR VAL SEQRES 22 B 278 ARG ASP GLN VAL LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET CL A 309 1 HET 2TX A 310 31 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HET 2TX B 308 31 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM 2TX (3S)-2,2-DIMETHYL-3-[(3E,7E,11E,15E)-3,7,12,16,20- HETNAM 2 2TX PENTAMETHYLHENICOSA-3,7,11,15,19-PENTAEN-1-YL]OXIRANE HETSYN 2TX 2,3-OXIDOSQUALENE FORMUL 3 SO4 7(O4 S 2-) FORMUL 6 CL 9(CL 1-) FORMUL 12 2TX 2(C30 H50 O) FORMUL 21 HOH *1062(H2 O) HELIX 1 1 SER A 9 GLN A 24 1 16 HELIX 2 2 VAL A 26 LEU A 30 5 5 HELIX 3 3 ASP A 34 ARG A 45 1 12 HELIX 4 4 ASP A 48 LYS A 66 1 19 HELIX 5 5 ASP A 67 TRP A 74 5 8 HELIX 6 6 PRO A 77 LEU A 84 1 8 HELIX 7 7 ASP A 107 ALA A 115 1 9 HELIX 8 8 SER A 116 GLY A 143 1 28 HELIX 9 9 GLY A 159 LEU A 163 5 5 HELIX 10 10 TRP A 164 TYR A 182 1 19 HELIX 11 11 LEU A 197 LYS A 206 1 10 HELIX 12 12 PRO A 207 LEU A 209 5 3 HELIX 13 13 SER A 210 LYS A 216 1 7 HELIX 14 14 ASN A 223 ILE A 232 1 10 HELIX 15 15 SER A 233 VAL A 237 5 5 HELIX 16 16 PRO A 238 GLY A 242 5 5 HELIX 17 17 PRO A 265 TYR A 269 5 5 HELIX 18 18 SER B 9 GLN B 24 1 16 HELIX 19 19 VAL B 26 LEU B 30 5 5 HELIX 20 20 ASP B 34 ARG B 45 1 12 HELIX 21 21 ASP B 48 LYS B 66 1 19 HELIX 22 22 ASP B 67 TRP B 74 5 8 HELIX 23 23 PRO B 77 LEU B 84 1 8 HELIX 24 24 ASP B 107 ALA B 115 1 9 HELIX 25 25 SER B 116 GLY B 143 1 28 HELIX 26 26 GLY B 159 LEU B 163 5 5 HELIX 27 27 TRP B 164 TYR B 182 1 19 HELIX 28 28 LEU B 197 LYS B 206 1 10 HELIX 29 29 PRO B 207 LEU B 209 5 3 HELIX 30 30 SER B 210 LYS B 216 1 7 HELIX 31 31 ASN B 223 ILE B 232 1 10 HELIX 32 32 SER B 233 VAL B 237 5 5 HELIX 33 33 PRO B 238 GLY B 242 5 5 HELIX 34 34 PRO B 265 TYR B 269 5 5 SHEET 1 A 5 GLY A 87 TYR A 91 0 SHEET 2 A 5 PRO A 97 ILE A 102 -1 O TYR A 100 N GLY A 87 SHEET 3 A 5 ILE A 149 ASP A 154 1 O ASP A 154 N ASP A 101 SHEET 4 A 5 LEU A 186 VAL A 192 1 O PHE A 190 N TYR A 153 SHEET 5 A 5 ILE A 217 VAL A 219 1 O MET A 218 N LEU A 189 SHEET 1 B 5 GLY B 87 TYR B 91 0 SHEET 2 B 5 PRO B 97 ILE B 102 -1 O TYR B 100 N GLY B 87 SHEET 3 B 5 ILE B 149 ASP B 154 1 O ASP B 154 N ASP B 101 SHEET 4 B 5 LEU B 186 VAL B 192 1 O PHE B 190 N TYR B 153 SHEET 5 B 5 ILE B 217 VAL B 219 1 O MET B 218 N LEU B 189 SITE 1 AC1 6 SER A 116 LYS A 117 GLN A 118 HOH A 511 SITE 2 AC1 6 HOH A 628 HOH A 896 SITE 1 AC2 7 PRO A 195 LYS A 196 HOH A 415 HOH A 667 SITE 2 AC2 7 HOH A 738 HOH A 886 HOH A 917 SITE 1 AC3 6 ASN A 251 LYS A 253 LYS A 255 HOH A 455 SITE 2 AC3 6 HOH A 810 HOH A 927 SITE 1 AC4 3 ARG A 188 HOH A 835 HOH A 874 SITE 1 AC5 3 LYS A 165 LYS B 206 ARG B 214 SITE 1 AC6 2 ARG A 214 LYS B 165 SITE 1 AC7 2 ARG A 266 HOH A 740 SITE 1 AC8 4 ASN A 203 HOH A 683 TRP B 164 LYS B 165 SITE 1 AC9 3 GLU A 78 TYR A 268 HOH A 888 SITE 1 BC1 13 ALA A 108 LEU A 121 TYR A 153 CYS A 155 SITE 2 BC1 13 HIS A 162 ALA A 167 ALA A 170 TYR A 171 SITE 3 BC1 13 LEU A 175 LEU A 189 PHE A 198 TYR A 202 SITE 4 BC1 13 ILE A 205 SITE 1 BC2 6 SER B 116 LYS B 117 GLN B 118 HOH B 509 SITE 2 BC2 6 HOH B 609 HOH B 911 SITE 1 BC3 5 PRO B 195 LYS B 196 HOH B 411 HOH B 735 SITE 2 BC3 5 HOH B 874 SITE 1 BC4 4 ARG B 188 HIS B 231 HOH B 809 HOH B 813 SITE 1 BC5 5 ASN B 251 LYS B 253 LYS B 255 HOH B 492 SITE 2 BC5 5 HOH B 807 SITE 1 BC6 2 ARG B 266 HOH B 759 SITE 1 BC7 4 PRO B 105 GLY B 262 ASP B 263 HOH B 691 SITE 1 BC8 3 GLY B 221 ALA B 222 HOH B 616 SITE 1 BC9 13 LEU B 106 LEU B 111 LYS B 124 TYR B 153 SITE 2 BC9 13 CYS B 155 HIS B 162 ALA B 167 LEU B 175 SITE 3 BC9 13 LEU B 189 PHE B 198 TYR B 202 ILE B 205 SITE 4 BC9 13 HOH B 689 CRYST1 71.880 73.800 94.450 90.00 96.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013912 0.000000 0.001533 0.00000 SCALE2 0.000000 0.013550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010652 0.00000