HEADER NUCLEAR PROTEIN 28-JAN-14 4ONI
TITLE STRUCTURE OF HUMAN ORPHAN RECEPTOR LRH1 BOUND TO TWO BACTERIAL
TITLE 2 PHOSPHOLIPIDS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 291-541;
COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR NR5A2, ALPHA-1-FETOPROTEIN
COMPND 6 TRANSCRIPTION FACTOR, B1-BINDING FACTOR, HB1F, CYP7A PROMOTER-BINDING
COMPND 7 FACTOR, HEPATOCYTIC TRANSCRIPTION FACTOR, LIVER RECEPTOR HOMOLOG 1,
COMPND 8 LRH-1;
COMPND 9 ENGINEERED: YES;
COMPND 10 MOL_ID: 2;
COMPND 11 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B MEMBER 2;
COMPND 12 CHAIN: C, D;
COMPND 13 FRAGMENT: NR BOX1, UNP RESIDUES 12-30;
COMPND 14 SYNONYM: NUCLEAR RECEPTOR NR0B2, ORPHAN NUCLEAR RECEPTOR SHP, SMALL
COMPND 15 HETERODIMER PARTNER;
COMPND 16 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NR5A2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) STAR ROSETTA;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 14 ORGANISM_COMMON: HUMAN;
SOURCE 15 ORGANISM_TAXID: 9606;
SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.
KEYWDS ALPHA HELICAL SANDWICH FOLD, NUCLEAR RECEPTOR, CO-FACTOR BINDING,
KEYWDS 2 NUCLEAR PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR M.A.GORMAN,M.W.PARKER,S.KUSUMO
REVDAT 3 08-NOV-23 4ONI 1 REMARK SEQADV
REVDAT 2 22-NOV-17 4ONI 1 REMARK
REVDAT 1 11-FEB-15 4ONI 0
JRNL AUTH M.A.GORMAN,M.W.PARKER,S.KUSUMO
JRNL TITL HUMAN NUCLEAR RECEPTOR LRH1 BOUND TO PHOSOPHOLIPIDS AND SHP
JRNL TITL 2 PEPTIDE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8
REMARK 3 NUMBER OF REFLECTIONS : 49124
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.158
REMARK 3 R VALUE (WORKING SET) : 0.156
REMARK 3 FREE R VALUE : 0.202
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 2487
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2439
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.61
REMARK 3 BIN R VALUE (WORKING SET) : 0.2470
REMARK 3 BIN FREE R VALUE SET COUNT : 135
REMARK 3 BIN FREE R VALUE : 0.2840
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4108
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 131
REMARK 3 SOLVENT ATOMS : 352
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.03000
REMARK 3 B22 (A**2) : -0.28000
REMARK 3 B33 (A**2) : 0.23000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.16000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.121
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.416
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4523 ; 0.018 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 4462 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6112 ; 1.855 ; 1.991
REMARK 3 BOND ANGLES OTHERS (DEGREES): 10295 ; 0.916 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 5.328 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;41.902 ;25.359
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;13.253 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.544 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.117 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5123 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY
REMARK 4
REMARK 4 4ONI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-14.
REMARK 100 THE DEPOSITION ID IS D_1000084715.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON
REMARK 200 BEAMLINE : MX2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.96
REMARK 200 MONOCHROMATOR : SI 111 CHANNEL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE
REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49141
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 73.772
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8
REMARK 200 DATA REDUNDANCY : 7.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.11900
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 72.4
REMARK 200 DATA REDUNDANCY IN SHELL : 5.10
REMARK 200 R MERGE FOR SHELL (I) : 0.79700
REMARK 200 R SYM FOR SHELL (I) : 0.79700
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 1YUC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.67
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 3350, BIS TRIS, 5%
REMARK 280 GLYCEROL, PH 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.92800
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12500 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 289
REMARK 465 ASN A 290
REMARK 465 ASP A 291
REMARK 465 SER A 292
REMARK 465 TYR A 293
REMARK 465 GLN A 294
REMARK 465 THR A 295
REMARK 465 SER A 296
REMARK 465 SER A 297
REMARK 465 PRO A 298
REMARK 465 ARG A 540
REMARK 465 ALA A 541
REMARK 465 GLN C 12
REMARK 465 LEU C 29
REMARK 465 LYS C 30
REMARK 465 SER B 289
REMARK 465 ASN B 290
REMARK 465 ASP B 291
REMARK 465 SER B 292
REMARK 465 TYR B 293
REMARK 465 GLN B 294
REMARK 465 THR B 295
REMARK 465 SER B 296
REMARK 465 SER B 297
REMARK 465 PRO B 298
REMARK 465 ALA B 299
REMARK 465 GLN D 12
REMARK 465 GLY D 13
REMARK 465 ALA D 14
REMARK 465 ALA D 15
REMARK 465 SER D 16
REMARK 465 ARG D 17
REMARK 465 SER D 28
REMARK 465 LEU D 29
REMARK 465 LYS D 30
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 882 O HOH A 883 2.01
REMARK 500 SG CYS B 487 O HOH B 771 2.06
REMARK 500 OE1 GLN B 442 O HOH B 840 2.10
REMARK 500 O HOH A 839 O HOH A 840 2.15
REMARK 500 CE MET B 511 O HOH B 845 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 832 O HOH B 742 2546 2.00
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 SER B 363 CB SER B 363 OG -0.093
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES
REMARK 500 ARG B 393 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 335 -36.26 -39.95
REMARK 500 PHE A 365 -61.31 78.31
REMARK 500 ASN B 466 65.70 -117.59
REMARK 500 TYR B 528 -164.76 -117.87
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6L B 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 602
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1YUC RELATED DB: PDB
REMARK 900 RELATED ID: 1YOK RELATED DB: PDB
DBREF 4ONI A 291 541 UNP O00482 NR5A2_HUMAN 291 541
DBREF 4ONI C 12 30 UNP Q15466 NR0B2_HUMAN 12 30
DBREF 4ONI B 291 541 UNP O00482 NR5A2_HUMAN 291 541
DBREF 4ONI D 12 30 UNP Q15466 NR0B2_HUMAN 12 30
SEQADV 4ONI SER A 289 UNP O00482 EXPRESSION TAG
SEQADV 4ONI ASN A 290 UNP O00482 EXPRESSION TAG
SEQADV 4ONI SER B 289 UNP O00482 EXPRESSION TAG
SEQADV 4ONI ASN B 290 UNP O00482 EXPRESSION TAG
SEQRES 1 A 253 SER ASN ASP SER TYR GLN THR SER SER PRO ALA SER ILE
SEQRES 2 A 253 PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU PRO ASP
SEQRES 3 A 253 GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR LEU GLN
SEQRES 4 A 253 GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS LEU SER
SEQRES 5 A 253 THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN THR LEU
SEQRES 6 A 253 PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE PHE PHE
SEQRES 7 A 253 ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU LEU GLN
SEQRES 8 A 253 ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS ILE TYR
SEQRES 9 A 253 ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE PHE LEU
SEQRES 10 A 253 VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE ALA SER
SEQRES 11 A 253 GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER HIS ALA
SEQRES 12 A 253 GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN PHE ASP
SEQRES 13 A 253 GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL LEU PHE
SEQRES 14 A 253 SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN LEU VAL
SEQRES 15 A 253 GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU LEU ASP
SEQRES 16 A 253 TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU LYS PHE
SEQRES 17 A 253 GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG ALA ILE
SEQRES 18 A 253 SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS HIS LEU
SEQRES 19 A 253 ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE GLU MET
SEQRES 20 A 253 LEU HIS ALA LYS ARG ALA
SEQRES 1 C 19 GLN GLY ALA ALA SER ARG PRO ALA ILE LEU TYR ALA LEU
SEQRES 2 C 19 LEU SER SER SER LEU LYS
SEQRES 1 B 253 SER ASN ASP SER TYR GLN THR SER SER PRO ALA SER ILE
SEQRES 2 B 253 PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU PRO ASP
SEQRES 3 B 253 GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR LEU GLN
SEQRES 4 B 253 GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS LEU SER
SEQRES 5 B 253 THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN THR LEU
SEQRES 6 B 253 PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE PHE PHE
SEQRES 7 B 253 ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU LEU GLN
SEQRES 8 B 253 ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS ILE TYR
SEQRES 9 B 253 ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE PHE LEU
SEQRES 10 B 253 VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE ALA SER
SEQRES 11 B 253 GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER HIS ALA
SEQRES 12 B 253 GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN PHE ASP
SEQRES 13 B 253 GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL LEU PHE
SEQRES 14 B 253 SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN LEU VAL
SEQRES 15 B 253 GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU LEU ASP
SEQRES 16 B 253 TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU LYS PHE
SEQRES 17 B 253 GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG ALA ILE
SEQRES 18 B 253 SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS HIS LEU
SEQRES 19 B 253 ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE GLU MET
SEQRES 20 B 253 LEU HIS ALA LYS ARG ALA
SEQRES 1 D 19 GLN GLY ALA ALA SER ARG PRO ALA ILE LEU TYR ALA LEU
SEQRES 2 D 19 LEU SER SER SER LEU LYS
HET EPH A 601 49
HET GOL A 602 6
HET GOL A 603 6
HET GOL A 604 6
HET P6L B 601 51
HET PG4 B 602 13
HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-
HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE
HETNAM GOL GLYCEROL
HETNAM P6L (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)
HETNAM 2 P6L PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL
HETNAM 3 P6L (8E)-OCTADEC-8-ENOATE
HETNAM PG4 TETRAETHYLENE GLYCOL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 5 EPH C39 H68 N O8 P
FORMUL 6 GOL 3(C3 H8 O3)
FORMUL 9 P6L C40 H75 O10 P
FORMUL 10 PG4 C8 H18 O5
FORMUL 11 HOH *352(H2 O)
HELIX 1 1 HIS A 303 LYS A 310 1 8
HELIX 2 2 ASP A 314 ASN A 332 1 19
HELIX 3 3 SER A 340 SER A 363 1 24
HELIX 4 4 PHE A 365 LEU A 369 5 5
HELIX 5 5 LYS A 370 GLY A 398 1 29
HELIX 6 6 TYR A 413 ALA A 420 1 8
HELIX 7 7 GLY A 421 GLN A 442 1 22
HELIX 8 8 ASP A 444 PHE A 457 1 14
HELIX 9 9 ASN A 466 TYR A 489 1 24
HELIX 10 10 GLU A 494 LEU A 501 1 8
HELIX 11 11 ARG A 502 ASN A 523 1 22
HELIX 12 12 ASN A 530 LYS A 539 1 10
HELIX 13 13 GLY C 13 ARG C 17 5 5
HELIX 14 14 PRO C 18 SER C 27 1 10
HELIX 15 15 PRO B 302 LYS B 310 1 9
HELIX 16 16 ASP B 314 ASN B 332 1 19
HELIX 17 17 SER B 340 SER B 362 1 23
HELIX 18 18 SER B 363 GLU B 368 1 6
HELIX 19 19 LYS B 370 GLY B 398 1 29
HELIX 20 20 TYR B 413 ALA B 420 1 8
HELIX 21 21 GLY B 421 GLN B 442 1 22
HELIX 22 22 ASP B 444 PHE B 457 1 14
HELIX 23 23 ASN B 466 TYR B 489 1 24
HELIX 24 24 GLU B 494 LEU B 501 1 8
HELIX 25 25 LEU B 501 ASN B 523 1 23
HELIX 26 26 ASN B 530 HIS B 537 1 8
HELIX 27 27 ALA D 19 SER D 27 1 9
SHEET 1 A 2 ILE A 301 PRO A 302 0
SHEET 2 A 2 LYS B 539 ARG B 540 -1 O ARG B 540 N ILE A 301
SHEET 1 B 2 SER A 402 PHE A 404 0
SHEET 2 B 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403
SHEET 1 C 2 SER B 402 PHE B 404 0
SHEET 2 C 2 GLN B 410 ASP B 412 -1 O VAL B 411 N ILE B 403
SITE 1 AC1 12 PHE A 342 MET A 345 HIS A 390 ILE A 416
SITE 2 AC1 12 ALA A 420 GLY A 421 LEU A 424 MET A 428
SITE 3 AC1 12 ALA A 431 TYR A 516 LYS A 520 HOH A 714
SITE 1 AC2 1 GLN A 409
SITE 1 AC3 9 LEU A 454 SER A 458 ASP A 460 LEU A 503
SITE 2 AC3 9 ARG A 507 HOH A 702 HOH A 705 HOH A 718
SITE 3 AC3 9 HOH A 867
SITE 1 AC4 3 GLN A 351 GLU A 358 HOH A 857
SITE 1 AC5 18 PHE B 342 MET B 345 SER B 383 ILE B 387
SITE 2 AC5 18 HIS B 390 ILE B 416 GLN B 419 ALA B 420
SITE 3 AC5 18 GLY B 421 LEU B 424 LEU B 427 MET B 428
SITE 4 AC5 18 ALA B 513 TYR B 516 LEU B 517 LYS B 520
SITE 5 AC5 18 HOH B 718 HOH B 835
SITE 1 AC6 3 LEU B 326 GLN B 419 HOH B 828
CRYST1 63.867 59.856 73.940 90.00 93.86 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015658 0.000000 0.001058 0.00000
SCALE2 0.000000 0.016707 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013555 0.00000