HEADER NUCLEAR PROTEIN 28-JAN-14 4ONI TITLE STRUCTURE OF HUMAN ORPHAN RECEPTOR LRH1 BOUND TO TWO BACTERIAL TITLE 2 PHOSPHOLIPIDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 291-541; COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR NR5A2, ALPHA-1-FETOPROTEIN COMPND 6 TRANSCRIPTION FACTOR, B1-BINDING FACTOR, HB1F, CYP7A PROMOTER-BINDING COMPND 7 FACTOR, HEPATOCYTIC TRANSCRIPTION FACTOR, LIVER RECEPTOR HOMOLOG 1, COMPND 8 LRH-1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B MEMBER 2; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: NR BOX1, UNP RESIDUES 12-30; COMPND 14 SYNONYM: NUCLEAR RECEPTOR NR0B2, ORPHAN NUCLEAR RECEPTOR SHP, SMALL COMPND 15 HETERODIMER PARTNER; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR5A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) STAR ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS ALPHA HELICAL SANDWICH FOLD, NUCLEAR RECEPTOR, CO-FACTOR BINDING, KEYWDS 2 NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER,S.KUSUMO REVDAT 3 08-NOV-23 4ONI 1 REMARK SEQADV REVDAT 2 22-NOV-17 4ONI 1 REMARK REVDAT 1 11-FEB-15 4ONI 0 JRNL AUTH M.A.GORMAN,M.W.PARKER,S.KUSUMO JRNL TITL HUMAN NUCLEAR RECEPTOR LRH1 BOUND TO PHOSOPHOLIPIDS AND SHP JRNL TITL 2 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 49124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4523 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4462 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6112 ; 1.855 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10295 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 5.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;41.902 ;25.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;13.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5123 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ONI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 73.772 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : 0.79700 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 3350, BIS TRIS, 5% REMARK 280 GLYCEROL, PH 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.92800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 289 REMARK 465 ASN A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 TYR A 293 REMARK 465 GLN A 294 REMARK 465 THR A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 PRO A 298 REMARK 465 ARG A 540 REMARK 465 ALA A 541 REMARK 465 GLN C 12 REMARK 465 LEU C 29 REMARK 465 LYS C 30 REMARK 465 SER B 289 REMARK 465 ASN B 290 REMARK 465 ASP B 291 REMARK 465 SER B 292 REMARK 465 TYR B 293 REMARK 465 GLN B 294 REMARK 465 THR B 295 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 PRO B 298 REMARK 465 ALA B 299 REMARK 465 GLN D 12 REMARK 465 GLY D 13 REMARK 465 ALA D 14 REMARK 465 ALA D 15 REMARK 465 SER D 16 REMARK 465 ARG D 17 REMARK 465 SER D 28 REMARK 465 LEU D 29 REMARK 465 LYS D 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 882 O HOH A 883 2.01 REMARK 500 SG CYS B 487 O HOH B 771 2.06 REMARK 500 OE1 GLN B 442 O HOH B 840 2.10 REMARK 500 O HOH A 839 O HOH A 840 2.15 REMARK 500 CE MET B 511 O HOH B 845 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 832 O HOH B 742 2546 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 363 CB SER B 363 OG -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 393 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 335 -36.26 -39.95 REMARK 500 PHE A 365 -61.31 78.31 REMARK 500 ASN B 466 65.70 -117.59 REMARK 500 TYR B 528 -164.76 -117.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6L B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YUC RELATED DB: PDB REMARK 900 RELATED ID: 1YOK RELATED DB: PDB DBREF 4ONI A 291 541 UNP O00482 NR5A2_HUMAN 291 541 DBREF 4ONI C 12 30 UNP Q15466 NR0B2_HUMAN 12 30 DBREF 4ONI B 291 541 UNP O00482 NR5A2_HUMAN 291 541 DBREF 4ONI D 12 30 UNP Q15466 NR0B2_HUMAN 12 30 SEQADV 4ONI SER A 289 UNP O00482 EXPRESSION TAG SEQADV 4ONI ASN A 290 UNP O00482 EXPRESSION TAG SEQADV 4ONI SER B 289 UNP O00482 EXPRESSION TAG SEQADV 4ONI ASN B 290 UNP O00482 EXPRESSION TAG SEQRES 1 A 253 SER ASN ASP SER TYR GLN THR SER SER PRO ALA SER ILE SEQRES 2 A 253 PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU PRO ASP SEQRES 3 A 253 GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR LEU GLN SEQRES 4 A 253 GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS LEU SER SEQRES 5 A 253 THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN THR LEU SEQRES 6 A 253 PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE PHE PHE SEQRES 7 A 253 ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU LEU GLN SEQRES 8 A 253 ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS ILE TYR SEQRES 9 A 253 ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE PHE LEU SEQRES 10 A 253 VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE ALA SER SEQRES 11 A 253 GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER HIS ALA SEQRES 12 A 253 GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN PHE ASP SEQRES 13 A 253 GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL LEU PHE SEQRES 14 A 253 SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN LEU VAL SEQRES 15 A 253 GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU LEU ASP SEQRES 16 A 253 TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU LYS PHE SEQRES 17 A 253 GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG ALA ILE SEQRES 18 A 253 SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS HIS LEU SEQRES 19 A 253 ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE GLU MET SEQRES 20 A 253 LEU HIS ALA LYS ARG ALA SEQRES 1 C 19 GLN GLY ALA ALA SER ARG PRO ALA ILE LEU TYR ALA LEU SEQRES 2 C 19 LEU SER SER SER LEU LYS SEQRES 1 B 253 SER ASN ASP SER TYR GLN THR SER SER PRO ALA SER ILE SEQRES 2 B 253 PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU PRO ASP SEQRES 3 B 253 GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR LEU GLN SEQRES 4 B 253 GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS LEU SER SEQRES 5 B 253 THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN THR LEU SEQRES 6 B 253 PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE PHE PHE SEQRES 7 B 253 ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU LEU GLN SEQRES 8 B 253 ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS ILE TYR SEQRES 9 B 253 ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE PHE LEU SEQRES 10 B 253 VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE ALA SER SEQRES 11 B 253 GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER HIS ALA SEQRES 12 B 253 GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN PHE ASP SEQRES 13 B 253 GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL LEU PHE SEQRES 14 B 253 SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN LEU VAL SEQRES 15 B 253 GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU LEU ASP SEQRES 16 B 253 TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU LYS PHE SEQRES 17 B 253 GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG ALA ILE SEQRES 18 B 253 SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS HIS LEU SEQRES 19 B 253 ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE GLU MET SEQRES 20 B 253 LEU HIS ALA LYS ARG ALA SEQRES 1 D 19 GLN GLY ALA ALA SER ARG PRO ALA ILE LEU TYR ALA LEU SEQRES 2 D 19 LEU SER SER SER LEU LYS HET EPH A 601 49 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET P6L B 601 51 HET PG4 B 602 13 HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETNAM GOL GLYCEROL HETNAM P6L (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 P6L PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL HETNAM 3 P6L (8E)-OCTADEC-8-ENOATE HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 EPH C39 H68 N O8 P FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 P6L C40 H75 O10 P FORMUL 10 PG4 C8 H18 O5 FORMUL 11 HOH *352(H2 O) HELIX 1 1 HIS A 303 LYS A 310 1 8 HELIX 2 2 ASP A 314 ASN A 332 1 19 HELIX 3 3 SER A 340 SER A 363 1 24 HELIX 4 4 PHE A 365 LEU A 369 5 5 HELIX 5 5 LYS A 370 GLY A 398 1 29 HELIX 6 6 TYR A 413 ALA A 420 1 8 HELIX 7 7 GLY A 421 GLN A 442 1 22 HELIX 8 8 ASP A 444 PHE A 457 1 14 HELIX 9 9 ASN A 466 TYR A 489 1 24 HELIX 10 10 GLU A 494 LEU A 501 1 8 HELIX 11 11 ARG A 502 ASN A 523 1 22 HELIX 12 12 ASN A 530 LYS A 539 1 10 HELIX 13 13 GLY C 13 ARG C 17 5 5 HELIX 14 14 PRO C 18 SER C 27 1 10 HELIX 15 15 PRO B 302 LYS B 310 1 9 HELIX 16 16 ASP B 314 ASN B 332 1 19 HELIX 17 17 SER B 340 SER B 362 1 23 HELIX 18 18 SER B 363 GLU B 368 1 6 HELIX 19 19 LYS B 370 GLY B 398 1 29 HELIX 20 20 TYR B 413 ALA B 420 1 8 HELIX 21 21 GLY B 421 GLN B 442 1 22 HELIX 22 22 ASP B 444 PHE B 457 1 14 HELIX 23 23 ASN B 466 TYR B 489 1 24 HELIX 24 24 GLU B 494 LEU B 501 1 8 HELIX 25 25 LEU B 501 ASN B 523 1 23 HELIX 26 26 ASN B 530 HIS B 537 1 8 HELIX 27 27 ALA D 19 SER D 27 1 9 SHEET 1 A 2 ILE A 301 PRO A 302 0 SHEET 2 A 2 LYS B 539 ARG B 540 -1 O ARG B 540 N ILE A 301 SHEET 1 B 2 SER A 402 PHE A 404 0 SHEET 2 B 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403 SHEET 1 C 2 SER B 402 PHE B 404 0 SHEET 2 C 2 GLN B 410 ASP B 412 -1 O VAL B 411 N ILE B 403 SITE 1 AC1 12 PHE A 342 MET A 345 HIS A 390 ILE A 416 SITE 2 AC1 12 ALA A 420 GLY A 421 LEU A 424 MET A 428 SITE 3 AC1 12 ALA A 431 TYR A 516 LYS A 520 HOH A 714 SITE 1 AC2 1 GLN A 409 SITE 1 AC3 9 LEU A 454 SER A 458 ASP A 460 LEU A 503 SITE 2 AC3 9 ARG A 507 HOH A 702 HOH A 705 HOH A 718 SITE 3 AC3 9 HOH A 867 SITE 1 AC4 3 GLN A 351 GLU A 358 HOH A 857 SITE 1 AC5 18 PHE B 342 MET B 345 SER B 383 ILE B 387 SITE 2 AC5 18 HIS B 390 ILE B 416 GLN B 419 ALA B 420 SITE 3 AC5 18 GLY B 421 LEU B 424 LEU B 427 MET B 428 SITE 4 AC5 18 ALA B 513 TYR B 516 LEU B 517 LYS B 520 SITE 5 AC5 18 HOH B 718 HOH B 835 SITE 1 AC6 3 LEU B 326 GLN B 419 HOH B 828 CRYST1 63.867 59.856 73.940 90.00 93.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015658 0.000000 0.001058 0.00000 SCALE2 0.000000 0.016707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013555 0.00000