data_4ONR # _entry.id 4ONR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ONR pdb_00004onr 10.2210/pdb4onr/pdb RCSB RCSB084724 ? ? WWPDB D_1000084724 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-09 2 'Structure model' 1 1 2014-07-23 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.value' 12 3 'Structure model' '_struct_conn.pdbx_dist_value' 13 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 3 'Structure model' '_struct_ref_seq_dif.details' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4ONR _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomchick, D.R.' 1 'Deka, R.K.' 2 'Blevins, J.S.' 3 # _citation.id primary _citation.title 'Identification of Lysine Residues in the Borrelia burgdorferi DbpA Adhesin Required for Murine Infection.' _citation.journal_abbrev Infect.Immun. _citation.journal_volume 82 _citation.page_first 3186 _citation.page_last 3198 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0019-9567 _citation.journal_id_CSD 999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24842928 _citation.pdbx_database_id_DOI 10.1128/IAI.02036-14 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fortune, D.E.' 1 ? primary 'Lin, Y.P.' 2 ? primary 'Deka, R.K.' 3 ? primary 'Groshong, A.M.' 4 ? primary 'Moore, B.P.' 5 ? primary 'Hagman, K.E.' 6 ? primary 'Leong, J.M.' 7 ? primary 'Tomchick, D.R.' 8 ? primary 'Blevins, J.S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DECORIN-BINDING PROTEIN DbpA' 18059.713 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 water nat water 18.015 171 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMDGLTGATKIKLESSAKAIVDEIDAIKKKAASMGVNFDAFKDKKTGSGVSENPFILEAKVRATTVAEKFVIAIEEEAT KLKETGSSGEFSAMYDLMFEVSKPLQELGIQEMTKTVSMAAEENPPTTAQGVLEIAKKMREKLQRVHKKNQDTLKKKNTE DSTAKS ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMDGLTGATKIKLESSAKAIVDEIDAIKKKAASMGVNFDAFKDKKTGSGVSENPFILEAKVRATTVAEKFVIAIEEEAT KLKETGSSGEFSAMYDLMFEVSKPLQELGIQEMTKTVSMAAEENPPTTAQGVLEIAKKMREKLQRVHKKNQDTLKKKNTE DSTAKS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 GLY n 1 6 LEU n 1 7 THR n 1 8 GLY n 1 9 ALA n 1 10 THR n 1 11 LYS n 1 12 ILE n 1 13 LYS n 1 14 LEU n 1 15 GLU n 1 16 SER n 1 17 SER n 1 18 ALA n 1 19 LYS n 1 20 ALA n 1 21 ILE n 1 22 VAL n 1 23 ASP n 1 24 GLU n 1 25 ILE n 1 26 ASP n 1 27 ALA n 1 28 ILE n 1 29 LYS n 1 30 LYS n 1 31 LYS n 1 32 ALA n 1 33 ALA n 1 34 SER n 1 35 MET n 1 36 GLY n 1 37 VAL n 1 38 ASN n 1 39 PHE n 1 40 ASP n 1 41 ALA n 1 42 PHE n 1 43 LYS n 1 44 ASP n 1 45 LYS n 1 46 LYS n 1 47 THR n 1 48 GLY n 1 49 SER n 1 50 GLY n 1 51 VAL n 1 52 SER n 1 53 GLU n 1 54 ASN n 1 55 PRO n 1 56 PHE n 1 57 ILE n 1 58 LEU n 1 59 GLU n 1 60 ALA n 1 61 LYS n 1 62 VAL n 1 63 ARG n 1 64 ALA n 1 65 THR n 1 66 THR n 1 67 VAL n 1 68 ALA n 1 69 GLU n 1 70 LYS n 1 71 PHE n 1 72 VAL n 1 73 ILE n 1 74 ALA n 1 75 ILE n 1 76 GLU n 1 77 GLU n 1 78 GLU n 1 79 ALA n 1 80 THR n 1 81 LYS n 1 82 LEU n 1 83 LYS n 1 84 GLU n 1 85 THR n 1 86 GLY n 1 87 SER n 1 88 SER n 1 89 GLY n 1 90 GLU n 1 91 PHE n 1 92 SER n 1 93 ALA n 1 94 MET n 1 95 TYR n 1 96 ASP n 1 97 LEU n 1 98 MET n 1 99 PHE n 1 100 GLU n 1 101 VAL n 1 102 SER n 1 103 LYS n 1 104 PRO n 1 105 LEU n 1 106 GLN n 1 107 GLU n 1 108 LEU n 1 109 GLY n 1 110 ILE n 1 111 GLN n 1 112 GLU n 1 113 MET n 1 114 THR n 1 115 LYS n 1 116 THR n 1 117 VAL n 1 118 SER n 1 119 MET n 1 120 ALA n 1 121 ALA n 1 122 GLU n 1 123 GLU n 1 124 ASN n 1 125 PRO n 1 126 PRO n 1 127 THR n 1 128 THR n 1 129 ALA n 1 130 GLN n 1 131 GLY n 1 132 VAL n 1 133 LEU n 1 134 GLU n 1 135 ILE n 1 136 ALA n 1 137 LYS n 1 138 LYS n 1 139 MET n 1 140 ARG n 1 141 GLU n 1 142 LYS n 1 143 LEU n 1 144 GLN n 1 145 ARG n 1 146 VAL n 1 147 HIS n 1 148 LYS n 1 149 LYS n 1 150 ASN n 1 151 GLN n 1 152 ASP n 1 153 THR n 1 154 LEU n 1 155 LYS n 1 156 LYS n 1 157 LYS n 1 158 ASN n 1 159 THR n 1 160 GLU n 1 161 ASP n 1 162 SER n 1 163 THR n 1 164 ALA n 1 165 LYS n 1 166 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Lyme disease spirochete' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene dbpA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Bb297 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Borrelia burgdorferi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 139 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain XL1-Blue _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 ALA 2 -2 -2 ALA ALA A . n A 1 3 MET 3 -1 -1 MET MET A . n A 1 4 ASP 4 0 0 ASP ASP A . n A 1 5 GLY 5 26 26 GLY GLY A . n A 1 6 LEU 6 27 27 LEU LEU A . n A 1 7 THR 7 28 28 THR THR A . n A 1 8 GLY 8 29 29 GLY GLY A . n A 1 9 ALA 9 30 30 ALA ALA A . n A 1 10 THR 10 31 31 THR THR A . n A 1 11 LYS 11 32 32 LYS LYS A . n A 1 12 ILE 12 33 33 ILE ILE A . n A 1 13 LYS 13 34 34 LYS LYS A . n A 1 14 LEU 14 35 35 LEU LEU A . n A 1 15 GLU 15 36 36 GLU GLU A . n A 1 16 SER 16 37 37 SER SER A . n A 1 17 SER 17 38 38 SER SER A . n A 1 18 ALA 18 39 39 ALA ALA A . n A 1 19 LYS 19 40 40 LYS LYS A . n A 1 20 ALA 20 41 41 ALA ALA A . n A 1 21 ILE 21 42 42 ILE ILE A . n A 1 22 VAL 22 43 43 VAL VAL A . n A 1 23 ASP 23 44 44 ASP ASP A . n A 1 24 GLU 24 45 45 GLU GLU A . n A 1 25 ILE 25 46 46 ILE ILE A . n A 1 26 ASP 26 47 47 ASP ASP A . n A 1 27 ALA 27 48 48 ALA ALA A . n A 1 28 ILE 28 49 49 ILE ILE A . n A 1 29 LYS 29 50 50 LYS LYS A . n A 1 30 LYS 30 51 51 LYS LYS A . n A 1 31 LYS 31 52 52 LYS LYS A . n A 1 32 ALA 32 53 53 ALA ALA A . n A 1 33 ALA 33 54 54 ALA ALA A . n A 1 34 SER 34 55 55 SER SER A . n A 1 35 MET 35 56 56 MET MET A . n A 1 36 GLY 36 57 57 GLY GLY A . n A 1 37 VAL 37 58 58 VAL VAL A . n A 1 38 ASN 38 59 59 ASN ASN A . n A 1 39 PHE 39 60 60 PHE PHE A . n A 1 40 ASP 40 61 61 ASP ASP A . n A 1 41 ALA 41 62 62 ALA ALA A . n A 1 42 PHE 42 63 63 PHE PHE A . n A 1 43 LYS 43 64 64 LYS LYS A . n A 1 44 ASP 44 65 ? ? ? A . n A 1 45 LYS 45 66 ? ? ? A . n A 1 46 LYS 46 67 ? ? ? A . n A 1 47 THR 47 68 ? ? ? A . n A 1 48 GLY 48 69 ? ? ? A . n A 1 49 SER 49 70 ? ? ? A . n A 1 50 GLY 50 71 ? ? ? A . n A 1 51 VAL 51 72 72 VAL VAL A . n A 1 52 SER 52 73 73 SER SER A . n A 1 53 GLU 53 74 74 GLU GLU A . n A 1 54 ASN 54 75 75 ASN ASN A . n A 1 55 PRO 55 76 76 PRO PRO A . n A 1 56 PHE 56 77 77 PHE PHE A . n A 1 57 ILE 57 78 78 ILE ILE A . n A 1 58 LEU 58 79 79 LEU LEU A . n A 1 59 GLU 59 80 80 GLU GLU A . n A 1 60 ALA 60 81 81 ALA ALA A . n A 1 61 LYS 61 82 82 LYS LYS A . n A 1 62 VAL 62 83 83 VAL VAL A . n A 1 63 ARG 63 84 84 ARG ARG A . n A 1 64 ALA 64 85 85 ALA ALA A . n A 1 65 THR 65 86 86 THR THR A . n A 1 66 THR 66 87 87 THR THR A . n A 1 67 VAL 67 88 88 VAL VAL A . n A 1 68 ALA 68 89 89 ALA ALA A . n A 1 69 GLU 69 90 90 GLU GLU A . n A 1 70 LYS 70 91 91 LYS LYS A . n A 1 71 PHE 71 92 92 PHE PHE A . n A 1 72 VAL 72 93 93 VAL VAL A . n A 1 73 ILE 73 94 94 ILE ILE A . n A 1 74 ALA 74 95 95 ALA ALA A . n A 1 75 ILE 75 96 96 ILE ILE A . n A 1 76 GLU 76 97 97 GLU GLU A . n A 1 77 GLU 77 98 98 GLU GLU A . n A 1 78 GLU 78 99 99 GLU GLU A . n A 1 79 ALA 79 100 100 ALA ALA A . n A 1 80 THR 80 101 101 THR THR A . n A 1 81 LYS 81 102 102 LYS LYS A . n A 1 82 LEU 82 103 103 LEU LEU A . n A 1 83 LYS 83 104 104 LYS LYS A . n A 1 84 GLU 84 105 105 GLU GLU A . n A 1 85 THR 85 106 106 THR THR A . n A 1 86 GLY 86 107 107 GLY GLY A . n A 1 87 SER 87 108 108 SER SER A . n A 1 88 SER 88 109 109 SER SER A . n A 1 89 GLY 89 110 110 GLY GLY A . n A 1 90 GLU 90 111 111 GLU GLU A . n A 1 91 PHE 91 112 112 PHE PHE A . n A 1 92 SER 92 113 113 SER SER A . n A 1 93 ALA 93 114 114 ALA ALA A . n A 1 94 MET 94 115 115 MET MET A . n A 1 95 TYR 95 116 116 TYR TYR A . n A 1 96 ASP 96 117 117 ASP ASP A . n A 1 97 LEU 97 118 118 LEU LEU A . n A 1 98 MET 98 119 119 MET MET A . n A 1 99 PHE 99 120 120 PHE PHE A . n A 1 100 GLU 100 121 121 GLU GLU A . n A 1 101 VAL 101 122 122 VAL VAL A . n A 1 102 SER 102 123 123 SER SER A . n A 1 103 LYS 103 124 124 LYS LYS A . n A 1 104 PRO 104 125 125 PRO PRO A . n A 1 105 LEU 105 126 126 LEU LEU A . n A 1 106 GLN 106 127 127 GLN GLN A . n A 1 107 GLU 107 128 128 GLU GLU A . n A 1 108 LEU 108 129 129 LEU LEU A . n A 1 109 GLY 109 130 130 GLY GLY A . n A 1 110 ILE 110 131 131 ILE ILE A . n A 1 111 GLN 111 132 132 GLN GLN A . n A 1 112 GLU 112 133 133 GLU GLU A . n A 1 113 MET 113 134 134 MET MET A . n A 1 114 THR 114 135 135 THR THR A . n A 1 115 LYS 115 136 136 LYS LYS A . n A 1 116 THR 116 137 137 THR THR A . n A 1 117 VAL 117 138 138 VAL VAL A . n A 1 118 SER 118 139 139 SER SER A . n A 1 119 MET 119 140 140 MET MET A . n A 1 120 ALA 120 141 141 ALA ALA A . n A 1 121 ALA 121 142 142 ALA ALA A . n A 1 122 GLU 122 143 143 GLU GLU A . n A 1 123 GLU 123 144 144 GLU GLU A . n A 1 124 ASN 124 145 145 ASN ASN A . n A 1 125 PRO 125 146 146 PRO PRO A . n A 1 126 PRO 126 147 147 PRO PRO A . n A 1 127 THR 127 148 148 THR THR A . n A 1 128 THR 128 149 149 THR THR A . n A 1 129 ALA 129 150 150 ALA ALA A . n A 1 130 GLN 130 151 151 GLN GLN A . n A 1 131 GLY 131 152 152 GLY GLY A . n A 1 132 VAL 132 153 153 VAL VAL A . n A 1 133 LEU 133 154 154 LEU LEU A . n A 1 134 GLU 134 155 155 GLU GLU A . n A 1 135 ILE 135 156 156 ILE ILE A . n A 1 136 ALA 136 157 157 ALA ALA A . n A 1 137 LYS 137 158 158 LYS LYS A . n A 1 138 LYS 138 159 159 LYS LYS A . n A 1 139 MET 139 160 160 MET MET A . n A 1 140 ARG 140 161 161 ARG ARG A . n A 1 141 GLU 141 162 162 GLU GLU A . n A 1 142 LYS 142 163 163 LYS LYS A . n A 1 143 LEU 143 164 164 LEU LEU A . n A 1 144 GLN 144 165 165 GLN GLN A . n A 1 145 ARG 145 166 166 ARG ARG A . n A 1 146 VAL 146 167 167 VAL VAL A . n A 1 147 HIS 147 168 168 HIS HIS A . n A 1 148 LYS 148 169 169 LYS LYS A . n A 1 149 LYS 149 170 170 LYS LYS A . n A 1 150 ASN 150 171 171 ASN ASN A . n A 1 151 GLN 151 172 172 GLN GLN A . n A 1 152 ASP 152 173 173 ASP ASP A . n A 1 153 THR 153 174 174 THR THR A . n A 1 154 LEU 154 175 175 LEU LEU A . n A 1 155 LYS 155 176 ? ? ? A . n A 1 156 LYS 156 177 ? ? ? A . n A 1 157 LYS 157 178 ? ? ? A . n A 1 158 ASN 158 179 ? ? ? A . n A 1 159 THR 159 180 ? ? ? A . n A 1 160 GLU 160 181 ? ? ? A . n A 1 161 ASP 161 182 ? ? ? A . n A 1 162 SER 162 183 ? ? ? A . n A 1 163 THR 163 184 ? ? ? A . n A 1 164 ALA 164 185 ? ? ? A . n A 1 165 LYS 165 186 ? ? ? A . n A 1 166 SER 166 187 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 201 1 NI NI A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 35 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 37 HOH HOH A . C 3 HOH 38 338 38 HOH HOH A . C 3 HOH 39 339 39 HOH HOH A . C 3 HOH 40 340 40 HOH HOH A . C 3 HOH 41 341 41 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 43 HOH HOH A . C 3 HOH 44 344 44 HOH HOH A . C 3 HOH 45 345 45 HOH HOH A . C 3 HOH 46 346 46 HOH HOH A . C 3 HOH 47 347 47 HOH HOH A . C 3 HOH 48 348 48 HOH HOH A . C 3 HOH 49 349 49 HOH HOH A . C 3 HOH 50 350 50 HOH HOH A . C 3 HOH 51 351 51 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 53 HOH HOH A . C 3 HOH 54 354 54 HOH HOH A . C 3 HOH 55 355 55 HOH HOH A . C 3 HOH 56 356 56 HOH HOH A . C 3 HOH 57 357 57 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 59 HOH HOH A . C 3 HOH 60 360 60 HOH HOH A . C 3 HOH 61 361 61 HOH HOH A . C 3 HOH 62 362 64 HOH HOH A . C 3 HOH 63 363 65 HOH HOH A . C 3 HOH 64 364 66 HOH HOH A . C 3 HOH 65 365 67 HOH HOH A . C 3 HOH 66 366 68 HOH HOH A . C 3 HOH 67 367 69 HOH HOH A . C 3 HOH 68 368 70 HOH HOH A . C 3 HOH 69 369 71 HOH HOH A . C 3 HOH 70 370 72 HOH HOH A . C 3 HOH 71 371 73 HOH HOH A . C 3 HOH 72 372 74 HOH HOH A . C 3 HOH 73 373 75 HOH HOH A . C 3 HOH 74 374 76 HOH HOH A . C 3 HOH 75 375 77 HOH HOH A . C 3 HOH 76 376 78 HOH HOH A . C 3 HOH 77 377 79 HOH HOH A . C 3 HOH 78 378 80 HOH HOH A . C 3 HOH 79 379 81 HOH HOH A . C 3 HOH 80 380 82 HOH HOH A . C 3 HOH 81 381 83 HOH HOH A . C 3 HOH 82 382 84 HOH HOH A . C 3 HOH 83 383 85 HOH HOH A . C 3 HOH 84 384 86 HOH HOH A . C 3 HOH 85 385 87 HOH HOH A . C 3 HOH 86 386 89 HOH HOH A . C 3 HOH 87 387 90 HOH HOH A . C 3 HOH 88 388 91 HOH HOH A . C 3 HOH 89 389 93 HOH HOH A . C 3 HOH 90 390 94 HOH HOH A . C 3 HOH 91 391 95 HOH HOH A . C 3 HOH 92 392 97 HOH HOH A . C 3 HOH 93 393 98 HOH HOH A . C 3 HOH 94 394 99 HOH HOH A . C 3 HOH 95 395 100 HOH HOH A . C 3 HOH 96 396 101 HOH HOH A . C 3 HOH 97 397 102 HOH HOH A . C 3 HOH 98 398 103 HOH HOH A . C 3 HOH 99 399 104 HOH HOH A . C 3 HOH 100 400 105 HOH HOH A . C 3 HOH 101 401 106 HOH HOH A . C 3 HOH 102 402 107 HOH HOH A . C 3 HOH 103 403 109 HOH HOH A . C 3 HOH 104 404 110 HOH HOH A . C 3 HOH 105 405 111 HOH HOH A . C 3 HOH 106 406 112 HOH HOH A . C 3 HOH 107 407 113 HOH HOH A . C 3 HOH 108 408 114 HOH HOH A . C 3 HOH 109 409 115 HOH HOH A . C 3 HOH 110 410 116 HOH HOH A . C 3 HOH 111 411 117 HOH HOH A . C 3 HOH 112 412 119 HOH HOH A . C 3 HOH 113 413 120 HOH HOH A . C 3 HOH 114 414 121 HOH HOH A . C 3 HOH 115 415 122 HOH HOH A . C 3 HOH 116 416 123 HOH HOH A . C 3 HOH 117 417 124 HOH HOH A . C 3 HOH 118 418 125 HOH HOH A . C 3 HOH 119 419 126 HOH HOH A . C 3 HOH 120 420 127 HOH HOH A . C 3 HOH 121 421 128 HOH HOH A . C 3 HOH 122 422 129 HOH HOH A . C 3 HOH 123 423 130 HOH HOH A . C 3 HOH 124 424 131 HOH HOH A . C 3 HOH 125 425 132 HOH HOH A . C 3 HOH 126 426 133 HOH HOH A . C 3 HOH 127 427 134 HOH HOH A . C 3 HOH 128 428 135 HOH HOH A . C 3 HOH 129 429 136 HOH HOH A . C 3 HOH 130 430 137 HOH HOH A . C 3 HOH 131 431 138 HOH HOH A . C 3 HOH 132 432 139 HOH HOH A . C 3 HOH 133 433 140 HOH HOH A . C 3 HOH 134 434 141 HOH HOH A . C 3 HOH 135 435 142 HOH HOH A . C 3 HOH 136 436 143 HOH HOH A . C 3 HOH 137 437 144 HOH HOH A . C 3 HOH 138 438 145 HOH HOH A . C 3 HOH 139 439 146 HOH HOH A . C 3 HOH 140 440 147 HOH HOH A . C 3 HOH 141 441 148 HOH HOH A . C 3 HOH 142 442 149 HOH HOH A . C 3 HOH 143 443 150 HOH HOH A . C 3 HOH 144 444 151 HOH HOH A . C 3 HOH 145 445 152 HOH HOH A . C 3 HOH 146 446 153 HOH HOH A . C 3 HOH 147 447 154 HOH HOH A . C 3 HOH 148 448 155 HOH HOH A . C 3 HOH 149 449 156 HOH HOH A . C 3 HOH 150 450 157 HOH HOH A . C 3 HOH 151 451 159 HOH HOH A . C 3 HOH 152 452 161 HOH HOH A . C 3 HOH 153 453 162 HOH HOH A . C 3 HOH 154 454 163 HOH HOH A . C 3 HOH 155 455 165 HOH HOH A . C 3 HOH 156 456 166 HOH HOH A . C 3 HOH 157 457 167 HOH HOH A . C 3 HOH 158 458 169 HOH HOH A . C 3 HOH 159 459 170 HOH HOH A . C 3 HOH 160 460 171 HOH HOH A . C 3 HOH 161 461 172 HOH HOH A . C 3 HOH 162 462 173 HOH HOH A . C 3 HOH 163 463 174 HOH HOH A . C 3 HOH 164 464 175 HOH HOH A . C 3 HOH 165 465 177 HOH HOH A . C 3 HOH 166 466 178 HOH HOH A . C 3 HOH 167 467 179 HOH HOH A . C 3 HOH 168 468 181 HOH HOH A . C 3 HOH 169 469 182 HOH HOH A . C 3 HOH 170 470 185 HOH HOH A . C 3 HOH 171 471 186 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.8.4_1496 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-3000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? # _cell.length_a 49.524 _cell.length_b 49.524 _cell.length_c 57.943 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4ONR _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43' _symmetry.entry_id 4ONR _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 78 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4ONR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M CHES, 0.05 M NaCl, 30% PEG 3000, 10% (w/v) ethylene glycol, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD SBC-3 2004-02-13 monochromator 2 CCD SBC-3 ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'SAGITALLY FOCUSED Si(111)' 1 M x-ray 2 MAD 'SAGITALLY FOCUSED Si(111)' 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97935 1.0 2 0.97899 1.0 3 0.97915 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'APS BEAMLINE 19-ID' 0.97935 ? APS 19-ID 2 SYNCHROTRON 'APS BEAMLINE 19-BM' '0.97899, 0.97915' ? APS 19-BM # _reflns.entry_id 4ONR _reflns.B_iso_Wilson_estimate 22.590 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 22.8 _reflns.number_all 18358 _reflns.number_obs 18358 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.9 _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.64 ? 87.9 0.631 1.7 ? 3.3 ? ? ? ? ? 1 1,2 1.68 1.72 ? 99.4 ? ? ? ? ? ? ? ? ? 2 1,2 1.72 1.77 ? 100.0 ? ? ? ? ? ? ? ? ? 3 1,2 1.77 1.83 ? 100.0 ? ? ? ? ? ? ? ? ? 4 1,2 1.83 1.90 ? 100.0 ? ? ? ? ? ? ? ? ? 5 1,2 1.90 1.97 ? 100.0 ? ? ? ? ? ? ? ? ? 6 1,2 1.97 2.06 ? 100.0 ? ? ? ? ? ? ? ? ? 7 1,2 2.06 2.17 ? 100.0 ? ? ? ? ? ? ? ? ? 8 1,2 2.17 2.31 ? 100.0 ? ? ? ? ? ? ? ? ? 9 1,2 2.31 2.49 ? 100.0 ? ? ? ? ? ? ? ? ? 10 1,2 2.49 2.74 ? 100.0 ? ? ? ? ? ? ? ? ? 11 1,2 2.74 3.13 ? 100.0 ? ? ? ? ? ? ? ? ? 12 1,2 3.13 3.95 ? 100.0 ? ? ? ? ? ? ? ? ? 13 1,2 3.95 22.80 ? 97.8 ? ? ? ? ? ? ? ? ? 14 1,2 # _refine.entry_id 4ONR _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 22.7700 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8700 _refine.ls_number_reflns_obs 18318 _refine.ls_number_reflns_all 18318 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1711 _refine.ls_R_factor_R_work 0.1694 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2010 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1200 _refine.ls_number_reflns_R_free 937 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.7595 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 114.960 _refine.B_iso_min 13.730 _refine.pdbx_overall_phase_error 21.9400 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4ONR _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1120 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 1292 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 22.7700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1156 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1551 1.135 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 182 0.046 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 199 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 449 14.462 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.6002 1.6845 7 93.0000 2319 . 0.2444 0.2730 . 130 . 2449 . . 'X-RAY DIFFRACTION' 1.6845 1.7900 7 100.0000 2473 . 0.1925 0.2507 . 149 . 2622 . . 'X-RAY DIFFRACTION' 1.7900 1.9282 7 100.0000 2502 . 0.1850 0.2401 . 131 . 2633 . . 'X-RAY DIFFRACTION' 1.9282 2.1221 7 100.0000 2519 . 0.1713 0.2155 . 134 . 2653 . . 'X-RAY DIFFRACTION' 2.1221 2.4289 7 100.0000 2502 . 0.1499 0.2271 . 123 . 2625 . . 'X-RAY DIFFRACTION' 2.4289 3.0589 7 100.0000 2506 . 0.1713 0.1871 . 153 . 2659 . . 'X-RAY DIFFRACTION' 3.0589 22.7722 7 99.0000 2560 . 0.1640 0.1778 . 117 . 2677 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ONR _struct.title 'Crystal structure of Borrelia burgdorferi decorin-binding protein DbpA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ONR _struct_keywords.text 'GAG-BINDING PROTEIN, HELICAL BUNDLE PROTEIN, LYME DISEASE, BACTERIAL ADHESIN, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1W5I8_BORBG _struct_ref.pdbx_db_accession Q1W5I8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLTGATKIKLESSAKAIVDEIDAIKKKAASMGVNFDAFKDKKTGSGVSENPFILEAKVRATTVAEKFVIAIEEEATKLKE TGSSGEFSAMYDLMFEVSKPLQELGIQEMTKTVSMAAEENPPTTAQGVLEIAKKMREKLQRVHKKNQDTLKKKNTEDSTA KS ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ONR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q1W5I8 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 187 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 187 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ONR GLY A 1 ? UNP Q1W5I8 ? ? 'expression tag' -3 1 1 4ONR ALA A 2 ? UNP Q1W5I8 ? ? 'expression tag' -2 2 1 4ONR MET A 3 ? UNP Q1W5I8 ? ? 'expression tag' -1 3 1 4ONR ASP A 4 ? UNP Q1W5I8 ? ? 'expression tag' 0 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? MET A 35 ? THR A 28 MET A 56 1 ? 29 HELX_P HELX_P2 2 ASN A 54 ? LEU A 82 ? ASN A 75 LEU A 103 1 ? 29 HELX_P HELX_P3 3 SER A 87 ? LEU A 108 ? SER A 108 LEU A 129 1 ? 22 HELX_P HELX_P4 4 GLU A 112 ? ASN A 124 ? GLU A 133 ASN A 145 1 ? 13 HELX_P HELX_P5 5 THR A 128 ? LEU A 154 ? THR A 149 LEU A 175 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLY 1 N ? ? ? 1_555 B NI . NI ? ? A GLY -3 A NI 201 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc2 metalc ? ? A ALA 2 N ? ? ? 1_555 B NI . NI ? ? A ALA -2 A NI 201 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc3 metalc ? ? A MET 3 N ? ? ? 1_555 B NI . NI ? ? A MET -1 A NI 201 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc4 metalc ? ? A MET 3 SD ? ? ? 1_555 B NI . NI ? ? A MET -1 A NI 201 1_555 ? ? ? ? ? ? ? 2.266 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A GLY 1 ? A GLY -3 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 N ? A ALA 2 ? A ALA -2 ? 1_555 78.8 ? 2 N ? A GLY 1 ? A GLY -3 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 N ? A MET 3 ? A MET -1 ? 1_555 162.5 ? 3 N ? A ALA 2 ? A ALA -2 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 N ? A MET 3 ? A MET -1 ? 1_555 84.7 ? 4 N ? A GLY 1 ? A GLY -3 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 SD ? A MET 3 ? A MET -1 ? 1_555 98.0 ? 5 N ? A ALA 2 ? A ALA -2 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 SD ? A MET 3 ? A MET -1 ? 1_555 176.0 ? 6 N ? A MET 3 ? A MET -1 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 SD ? A MET 3 ? A MET -1 ? 1_555 98.2 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NI _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE NI A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 MET A 3 ? MET A -1 . ? 1_555 ? 2 AC1 4 GLY A 1 ? GLY A -3 . ? 1_555 ? 3 AC1 4 ALA A 2 ? ALA A -2 . ? 1_555 ? 4 AC1 4 ASP A 4 ? ASP A 0 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 442 ? ? O A HOH 464 ? ? 2.12 2 1 O A HOH 458 ? ? O A HOH 468 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A -2 ? ? -170.13 -1.92 2 1 PRO A 147 ? ? -82.85 48.43 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 22.9263 -3.4388 -2.9115 0.3396 0.2111 0.2332 -0.0203 -0.0183 -0.0166 4.8025 3.7979 2.1854 -3.0475 -0.2893 0.7921 -0.0725 -0.0503 0.1270 -0.1085 -0.4905 0.2134 0.1505 0.4019 -0.0164 'X-RAY DIFFRACTION' 2 ? refined 20.7557 5.8793 -2.0040 0.1935 0.1451 0.1363 0.0000 0.0037 -0.0129 2.9503 2.8947 2.1755 -0.3489 -0.4566 0.1540 -0.0281 -0.1825 0.1824 0.1369 -0.0274 -0.0511 -0.2167 0.1580 -0.1039 'X-RAY DIFFRACTION' 3 ? refined 26.1831 9.2423 4.7633 0.1797 0.1735 0.1595 -0.0045 -0.0065 -0.0073 3.4570 3.2085 2.4647 -0.8154 -0.4605 0.5530 -0.0524 0.0169 0.0312 -0.3044 0.2223 -0.2482 0.0929 -0.0115 0.2178 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid -3 through 75 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 76 through 129 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 130 through 175 ) ; ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 65 ? A ASP 44 2 1 Y 1 A LYS 66 ? A LYS 45 3 1 Y 1 A LYS 67 ? A LYS 46 4 1 Y 1 A THR 68 ? A THR 47 5 1 Y 1 A GLY 69 ? A GLY 48 6 1 Y 1 A SER 70 ? A SER 49 7 1 Y 1 A GLY 71 ? A GLY 50 8 1 Y 1 A LYS 176 ? A LYS 155 9 1 Y 1 A LYS 177 ? A LYS 156 10 1 Y 1 A LYS 178 ? A LYS 157 11 1 Y 1 A ASN 179 ? A ASN 158 12 1 Y 1 A THR 180 ? A THR 159 13 1 Y 1 A GLU 181 ? A GLU 160 14 1 Y 1 A ASP 182 ? A ASP 161 15 1 Y 1 A SER 183 ? A SER 162 16 1 Y 1 A THR 184 ? A THR 163 17 1 Y 1 A ALA 185 ? A ALA 164 18 1 Y 1 A LYS 186 ? A LYS 165 19 1 Y 1 A SER 187 ? A SER 166 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 NI NI NI N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TYR N N N N 308 TYR CA C N S 309 TYR C C N N 310 TYR O O N N 311 TYR CB C N N 312 TYR CG C Y N 313 TYR CD1 C Y N 314 TYR CD2 C Y N 315 TYR CE1 C Y N 316 TYR CE2 C Y N 317 TYR CZ C Y N 318 TYR OH O N N 319 TYR OXT O N N 320 TYR H H N N 321 TYR H2 H N N 322 TYR HA H N N 323 TYR HB2 H N N 324 TYR HB3 H N N 325 TYR HD1 H N N 326 TYR HD2 H N N 327 TYR HE1 H N N 328 TYR HE2 H N N 329 TYR HH H N N 330 TYR HXT H N N 331 VAL N N N N 332 VAL CA C N S 333 VAL C C N N 334 VAL O O N N 335 VAL CB C N N 336 VAL CG1 C N N 337 VAL CG2 C N N 338 VAL OXT O N N 339 VAL H H N N 340 VAL H2 H N N 341 VAL HA H N N 342 VAL HB H N N 343 VAL HG11 H N N 344 VAL HG12 H N N 345 VAL HG13 H N N 346 VAL HG21 H N N 347 VAL HG22 H N N 348 VAL HG23 H N N 349 VAL HXT H N N 350 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TYR N CA sing N N 293 TYR N H sing N N 294 TYR N H2 sing N N 295 TYR CA C sing N N 296 TYR CA CB sing N N 297 TYR CA HA sing N N 298 TYR C O doub N N 299 TYR C OXT sing N N 300 TYR CB CG sing N N 301 TYR CB HB2 sing N N 302 TYR CB HB3 sing N N 303 TYR CG CD1 doub Y N 304 TYR CG CD2 sing Y N 305 TYR CD1 CE1 sing Y N 306 TYR CD1 HD1 sing N N 307 TYR CD2 CE2 doub Y N 308 TYR CD2 HD2 sing N N 309 TYR CE1 CZ doub Y N 310 TYR CE1 HE1 sing N N 311 TYR CE2 CZ sing Y N 312 TYR CE2 HE2 sing N N 313 TYR CZ OH sing N N 314 TYR OH HH sing N N 315 TYR OXT HXT sing N N 316 VAL N CA sing N N 317 VAL N H sing N N 318 VAL N H2 sing N N 319 VAL CA C sing N N 320 VAL CA CB sing N N 321 VAL CA HA sing N N 322 VAL C O doub N N 323 VAL C OXT sing N N 324 VAL CB CG1 sing N N 325 VAL CB CG2 sing N N 326 VAL CB HB sing N N 327 VAL CG1 HG11 sing N N 328 VAL CG1 HG12 sing N N 329 VAL CG1 HG13 sing N N 330 VAL CG2 HG21 sing N N 331 VAL CG2 HG22 sing N N 332 VAL CG2 HG23 sing N N 333 VAL OXT HXT sing N N 334 # _atom_sites.entry_id 4ONR _atom_sites.fract_transf_matrix[1][1] 0.020192 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020192 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017258 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N NI O S # loop_