HEADER HYDROLASE 29-JAN-14 4ONW TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DAPE PROTEIN FROM TITLE 2 V.CHOLEREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SDAP DESUCCINYLASE, N-SUCCINYL-LL-2,6-DIAMINOHEPTANEDIOATE COMPND 5 AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: DAPE, VC_2152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DAPE, M20, AMINOPEPTIDASE, CSGID, STRUCTURAL GENOMICS, NIAID, KEYWDS 2 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, ZN BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.MAKOWSKA-GRZYSKA,R.JEDRZEJCZAK,M.GU,W.F.ANDERSON, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 20-SEP-23 4ONW 1 REMARK SEQADV REVDAT 3 26-JUL-17 4ONW 1 SOURCE REMARK REVDAT 2 23-JUL-14 4ONW 1 JRNL REVDAT 1 23-APR-14 4ONW 0 SPRSDE 23-APR-14 4ONW 3T68 JRNL AUTH B.NOCEK,A.STARUS,M.MAKOWSKA-GRZYSKA,B.GUTIERREZ,S.SANCHEZ, JRNL AUTH 2 R.JEDRZEJCZAK,J.C.MACK,K.W.OLSEN,A.JOACHIMIAK,R.C.HOLZ JRNL TITL THE DIMERIZATION DOMAIN IN DAPE ENZYMES IS REQUIRED FOR JRNL TITL 2 CATALYSIS. JRNL REF PLOS ONE V. 9 93593 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24806882 JRNL DOI 10.1371/JOURNAL.PONE.0093593 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 68927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3829 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1560 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.1870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.016 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4235 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4097 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5761 ; 2.113 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9452 ; 0.974 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 573 ; 7.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;36.179 ;24.693 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;12.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4872 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 917 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.508 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ONW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 37.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3ISZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) 1,4-BUTANEDIOL, 0.1M REMARK 280 ACETATE,, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.04400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.52200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 ALA B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 PHE A 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 PHE B 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 205 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 49.17 -88.59 REMARK 500 GLU A 47 -138.96 60.63 REMARK 500 MET A 102 35.05 -146.45 REMARK 500 ASP A 122 47.22 -98.67 REMARK 500 PHE A 139 77.71 -104.89 REMARK 500 PRO A 165 91.31 -69.36 REMARK 500 THR A 168 -62.84 -94.49 REMARK 500 GLU B 47 -129.13 54.06 REMARK 500 PRO B 73 155.49 -47.72 REMARK 500 MET B 102 34.34 -146.68 REMARK 500 ASN B 141 -49.23 -142.10 REMARK 500 HIS B 239 19.95 55.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISZ RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP90246 RELATED DB: TARGETTRACK DBREF 4ONW A 2 181 UNP Q9KQ52 DAPE_VIBCH 2 181 DBREF 4ONW A 184 266 UNP Q9KQ52 DAPE_VIBCH 295 377 DBREF 4ONW B 2 181 UNP Q9KQ52 DAPE_VIBCH 2 181 DBREF 4ONW B 184 266 UNP Q9KQ52 DAPE_VIBCH 295 377 SEQADV 4ONW SER A -1 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW ASN A 0 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW ALA A 1 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW GLY A 182 UNP Q9KQ52 LINKER SEQADV 4ONW GLY A 183 UNP Q9KQ52 LINKER SEQADV 4ONW SER B -1 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW ASN B 0 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW ALA B 1 UNP Q9KQ52 EXPRESSION TAG SEQADV 4ONW GLY B 182 UNP Q9KQ52 LINKER SEQADV 4ONW GLY B 183 UNP Q9KQ52 LINKER SEQRES 1 A 268 SER ASN ALA THR ASP SER PRO VAL LEU ALA LEU ALA LYS SEQRES 2 A 268 GLU LEU ILE SER ARG GLN SER VAL THR PRO ALA ASP ALA SEQRES 3 A 268 GLY CYS GLN ASP LEU MET ILE GLU ARG LEU LYS ALA LEU SEQRES 4 A 268 GLY PHE GLU ILE GLU SER MET VAL PHE GLU ASP THR THR SEQRES 5 A 268 ASN PHE TRP ALA ARG ARG GLY THR GLN SER PRO LEU PHE SEQRES 6 A 268 VAL PHE ALA GLY HIS THR ASP VAL VAL PRO ALA GLY PRO SEQRES 7 A 268 LEU SER GLN TRP HIS THR PRO PRO PHE GLU PRO THR VAL SEQRES 8 A 268 ILE ASP GLY PHE LEU HIS GLY ARG GLY ALA ALA ASP MET SEQRES 9 A 268 LYS GLY SER LEU ALA CYS MET ILE VAL ALA VAL GLU ARG SEQRES 10 A 268 PHE ILE ALA GLU HIS PRO ASP HIS GLN GLY SER ILE GLY SEQRES 11 A 268 PHE LEU ILE THR SER ASP GLU GLU GLY PRO PHE ILE ASN SEQRES 12 A 268 GLY THR VAL ARG VAL VAL GLU THR LEU MET ALA ARG ASN SEQRES 13 A 268 GLU LEU ILE ASP MET CYS ILE VAL GLY GLU PRO SER SER SEQRES 14 A 268 THR LEU ALA VAL GLY ASP VAL VAL LYS ASN GLY ARG ARG SEQRES 15 A 268 GLY GLY GLY PHE LEU THR ASP THR GLY GLU LEU LEU ALA SEQRES 16 A 268 ALA VAL VAL ALA ALA VAL GLU GLU VAL ASN HIS GLN ALA SEQRES 17 A 268 PRO ALA LEU LEU THR THR GLY GLY THR SER ASP GLY ARG SEQRES 18 A 268 PHE ILE ALA GLN MET GLY ALA GLN VAL VAL GLU LEU GLY SEQRES 19 A 268 PRO VAL ASN ALA THR ILE HIS LYS VAL ASN GLU CYS VAL SEQRES 20 A 268 ARG ILE ALA ASP LEU GLU LYS LEU THR ASP MET TYR GLN SEQRES 21 A 268 LYS THR LEU ASN HIS LEU LEU GLY SEQRES 1 B 268 SER ASN ALA THR ASP SER PRO VAL LEU ALA LEU ALA LYS SEQRES 2 B 268 GLU LEU ILE SER ARG GLN SER VAL THR PRO ALA ASP ALA SEQRES 3 B 268 GLY CYS GLN ASP LEU MET ILE GLU ARG LEU LYS ALA LEU SEQRES 4 B 268 GLY PHE GLU ILE GLU SER MET VAL PHE GLU ASP THR THR SEQRES 5 B 268 ASN PHE TRP ALA ARG ARG GLY THR GLN SER PRO LEU PHE SEQRES 6 B 268 VAL PHE ALA GLY HIS THR ASP VAL VAL PRO ALA GLY PRO SEQRES 7 B 268 LEU SER GLN TRP HIS THR PRO PRO PHE GLU PRO THR VAL SEQRES 8 B 268 ILE ASP GLY PHE LEU HIS GLY ARG GLY ALA ALA ASP MET SEQRES 9 B 268 LYS GLY SER LEU ALA CYS MET ILE VAL ALA VAL GLU ARG SEQRES 10 B 268 PHE ILE ALA GLU HIS PRO ASP HIS GLN GLY SER ILE GLY SEQRES 11 B 268 PHE LEU ILE THR SER ASP GLU GLU GLY PRO PHE ILE ASN SEQRES 12 B 268 GLY THR VAL ARG VAL VAL GLU THR LEU MET ALA ARG ASN SEQRES 13 B 268 GLU LEU ILE ASP MET CYS ILE VAL GLY GLU PRO SER SER SEQRES 14 B 268 THR LEU ALA VAL GLY ASP VAL VAL LYS ASN GLY ARG ARG SEQRES 15 B 268 GLY GLY GLY PHE LEU THR ASP THR GLY GLU LEU LEU ALA SEQRES 16 B 268 ALA VAL VAL ALA ALA VAL GLU GLU VAL ASN HIS GLN ALA SEQRES 17 B 268 PRO ALA LEU LEU THR THR GLY GLY THR SER ASP GLY ARG SEQRES 18 B 268 PHE ILE ALA GLN MET GLY ALA GLN VAL VAL GLU LEU GLY SEQRES 19 B 268 PRO VAL ASN ALA THR ILE HIS LYS VAL ASN GLU CYS VAL SEQRES 20 B 268 ARG ILE ALA ASP LEU GLU LYS LEU THR ASP MET TYR GLN SEQRES 21 B 268 LYS THR LEU ASN HIS LEU LEU GLY HET GOL A 401 6 HET BU1 A 402 6 HET BU1 A 403 6 HET EDO A 404 4 HET EDO A 405 4 HET BU1 B 301 6 HET GOL B 302 6 HET BU1 B 303 6 HET BU1 B 304 6 HET BU1 B 305 6 HET ACT B 306 4 HET EDO B 307 4 HET EDO B 308 4 HETNAM GOL GLYCEROL HETNAM BU1 1,4-BUTANEDIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 BU1 6(C4 H10 O2) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 13 ACT C2 H3 O2 1- FORMUL 16 HOH *541(H2 O) HELIX 1 1 SER A 4 ARG A 16 1 13 HELIX 2 2 GLY A 25 LEU A 37 1 13 HELIX 3 3 PRO A 76 TRP A 80 5 5 HELIX 4 4 MET A 102 HIS A 120 1 19 HELIX 5 5 ASN A 141 ARG A 153 1 13 HELIX 6 6 ARG A 179 PHE A 184 5 6 HELIX 7 7 GLY A 189 HIS A 204 1 16 HELIX 8 8 THR A 215 GLY A 225 1 11 HELIX 9 9 ILE A 247 GLY A 266 1 20 HELIX 10 10 SER B 4 SER B 15 1 12 HELIX 11 11 GLY B 25 ALA B 36 1 12 HELIX 12 12 PRO B 76 TRP B 80 5 5 HELIX 13 13 MET B 102 HIS B 120 1 19 HELIX 14 14 ASN B 141 ALA B 152 1 12 HELIX 15 15 ARG B 179 PHE B 184 5 6 HELIX 16 16 GLY B 189 HIS B 204 1 16 HELIX 17 17 THR B 215 GLY B 225 1 11 HELIX 18 18 ILE B 247 GLY B 266 1 20 SHEET 1 A 8 GLU A 40 PHE A 46 0 SHEET 2 A 8 THR A 49 ARG A 56 -1 O TRP A 53 N GLU A 42 SHEET 3 A 8 SER A 126 THR A 132 -1 O ILE A 127 N ARG A 56 SHEET 4 A 8 LEU A 62 HIS A 68 1 N PHE A 63 O GLY A 128 SHEET 5 A 8 MET A 159 VAL A 162 1 O ILE A 161 N ALA A 66 SHEET 6 A 8 GLN A 227 GLU A 230 1 O GLN A 227 N CYS A 160 SHEET 7 A 8 VAL A 174 ASN A 177 -1 N LYS A 176 O GLU A 230 SHEET 8 A 8 ALA A 208 LEU A 210 1 O LEU A 210 N ASN A 177 SHEET 1 B 3 THR A 88 ILE A 90 0 SHEET 2 B 3 PHE A 93 HIS A 95 -1 O HIS A 95 N THR A 88 SHEET 3 B 3 CYS A 244 ARG A 246 -1 O VAL A 245 N LEU A 94 SHEET 1 C 8 GLU B 40 PHE B 46 0 SHEET 2 C 8 THR B 49 ARG B 56 -1 O ARG B 55 N GLU B 40 SHEET 3 C 8 SER B 126 THR B 132 -1 O ILE B 131 N PHE B 52 SHEET 4 C 8 LEU B 62 HIS B 68 1 N PHE B 63 O SER B 126 SHEET 5 C 8 MET B 159 VAL B 162 1 O ILE B 161 N ALA B 66 SHEET 6 C 8 GLN B 227 GLU B 230 1 O VAL B 229 N CYS B 160 SHEET 7 C 8 VAL B 174 ASN B 177 -1 N LYS B 176 O GLU B 230 SHEET 8 C 8 ALA B 208 LEU B 210 1 O LEU B 210 N ASN B 177 SHEET 1 D 3 THR B 88 ILE B 90 0 SHEET 2 D 3 PHE B 93 HIS B 95 -1 O HIS B 95 N THR B 88 SHEET 3 D 3 CYS B 244 ARG B 246 -1 O VAL B 245 N LEU B 94 CISPEP 1 THR A 20 PRO A 21 0 -1.01 CISPEP 2 SER A 60 PRO A 61 0 -1.61 CISPEP 3 SER A 60 PRO A 61 0 0.22 CISPEP 4 ASP A 101 MET A 102 0 -2.11 CISPEP 5 THR B 20 PRO B 21 0 3.17 CISPEP 6 SER B 60 PRO B 61 0 -1.58 CISPEP 7 SER B 60 PRO B 61 0 -6.12 CISPEP 8 ASP B 101 MET B 102 0 -1.44 SITE 1 AC1 6 ARG A 145 GLU A 148 THR A 149 HOH A 522 SITE 2 AC1 6 ARG B 179 HOH B 452 SITE 1 AC2 8 MET A 151 GLU A 155 LEU A 156 ILE A 157 SITE 2 AC2 8 MET A 224 GLY A 225 ALA A 226 HOH A 505 SITE 1 AC3 5 GLU A 40 ARG A 55 GLY A 57 THR A 58 SITE 2 AC3 5 HOH A 575 SITE 1 AC4 4 ARG A 56 PRO A 121 ASP A 122 HIS A 123 SITE 1 AC5 6 GLY A 67 LEU A 130 THR A 132 THR A 143 SITE 2 AC5 6 VAL A 162 ASP A 217 SITE 1 AC6 6 HIS A 81 THR A 82 VAL B 89 ASP B 91 SITE 2 AC6 6 GLY B 92 HOH B 558 SITE 1 AC7 6 ARG A 179 HOH A 550 ARG B 145 GLU B 148 SITE 2 AC7 6 THR B 149 HOH B 443 SITE 1 AC8 9 VAL B 147 MET B 151 GLU B 155 LEU B 156 SITE 2 AC8 9 ILE B 157 MET B 224 GLY B 225 ALA B 226 SITE 3 AC8 9 HOH B 411 SITE 1 AC9 6 VAL A 89 ASP A 91 GLY A 92 LEU B 77 SITE 2 AC9 6 TRP B 80 HIS B 81 SITE 1 BC1 4 GLU B 40 ARG B 55 GLY B 57 HOH B 562 SITE 1 BC2 4 GLY B 178 GLY B 214 GLY B 218 GLU B 230 SITE 1 BC3 2 PRO B 121 HIS B 123 SITE 1 BC4 7 GLY B 67 HIS B 68 VAL B 162 GLU B 164 SITE 2 BC4 7 THR B 215 ASP B 217 HOH B 543 CRYST1 49.649 49.649 232.566 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020141 0.011629 0.000000 0.00000 SCALE2 0.000000 0.023257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004300 0.00000