HEADER HYDROLASE 04-FEB-14 4OOU TITLE CRYSTAL STRUCTURE OF BETA-1,4-D-MANNANASE FROM CRYPTOPYGUS ANTARCTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,4-MANNANASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOPYGUS ANTARCTICUS; SOURCE 3 ORGANISM_TAXID: 187623; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.-K.KIM,Y.J.AN,C.-S.JEONG,S.-S.CHA REVDAT 3 17-JUL-19 4OOU 1 REMARK REVDAT 2 05-NOV-14 4OOU 1 JRNL REVDAT 1 06-AUG-14 4OOU 0 JRNL AUTH M.K.KIM,Y.J.AN,J.M.SONG,C.S.JEONG,M.H.KANG,K.K.KWON,Y.H.LEE, JRNL AUTH 2 S.S.CHA JRNL TITL STRUCTURE-BASED INVESTIGATION INTO THE FUNCTIONAL ROLES OF JRNL TITL 2 THE EXTENDED LOOP AND SUBSTRATE-RECOGNITION SITES IN AN JRNL TITL 3 ENDO-BETA-1,4-D-MANNANASE FROM THE ANTARCTIC SPRINGTAIL, JRNL TITL 4 CRYPTOPYGUS ANTARCTICUS. JRNL REF PROTEINS V. 82 3217 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 25082572 JRNL DOI 10.1002/PROT.24655 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 35635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2268 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.60000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -6.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5768 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5155 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7838 ; 1.735 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11805 ; 0.953 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 729 ; 8.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;40.836 ;25.654 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;19.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6899 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1479 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 25%(W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 3350, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.11850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.02850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.02850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.11850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 TRP B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 PHE B 18 REMARK 465 SER B 19 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 TRP A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 GLN B 192 CG CD OE1 NE2 REMARK 470 LYS B 287 CG CD CE NZ REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 470 SER B 370 OG REMARK 470 LYS B 373 CG CD CE NZ REMARK 470 SER A 20 OG REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLN A 366 CG CD OE1 NE2 REMARK 470 SER A 370 OG REMARK 470 LYS A 373 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 315 OG SER B 318 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 49 96.18 -66.48 REMARK 500 ASN B 78 13.31 -143.87 REMARK 500 VAL B 84 -84.74 -114.78 REMARK 500 VAL B 86 -99.62 66.36 REMARK 500 VAL B 90 -46.05 -131.12 REMARK 500 SER B 102 -170.39 -172.66 REMARK 500 GLN B 137 77.76 -155.74 REMARK 500 ALA B 159 -59.87 -127.45 REMARK 500 ASP B 191 134.88 -177.48 REMARK 500 LEU B 246 -17.17 -48.91 REMARK 500 PHE B 252 16.33 57.77 REMARK 500 GLN B 278 116.34 -162.80 REMARK 500 VAL B 303 34.96 -143.04 REMARK 500 GLN B 319 41.07 -106.98 REMARK 500 ASN B 320 25.76 49.15 REMARK 500 VAL B 377 -67.18 -107.12 REMARK 500 HIS B 384 125.76 -36.01 REMARK 500 VAL A 84 -78.58 -118.81 REMARK 500 VAL A 86 -102.35 62.86 REMARK 500 GLN A 137 84.13 -162.61 REMARK 500 ALA A 159 -57.69 -140.95 REMARK 500 TYR A 254 -169.31 -76.90 REMARK 500 GLN A 278 119.88 -160.05 REMARK 500 TRP A 288 151.37 -43.15 REMARK 500 VAL A 303 51.90 -152.06 REMARK 500 SER A 318 -146.70 -127.66 REMARK 500 SER A 370 122.83 -39.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 365 GLN B 366 -146.48 REMARK 500 HIS B 383 HIS B 384 147.42 REMARK 500 GLY A 365 GLN A 366 -144.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOZ RELATED DB: PDB DBREF 4OOU B 1 382 UNP B4XC07 B4XC07_9HEXA 1 382 DBREF 4OOU A 1 382 UNP B4XC07 B4XC07_9HEXA 1 382 SEQADV 4OOU HIS B 383 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS B 384 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS B 385 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS B 386 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS B 387 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS B 388 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 383 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 384 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 385 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 386 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 387 UNP B4XC07 EXPRESSION TAG SEQADV 4OOU HIS A 388 UNP B4XC07 EXPRESSION TAG SEQRES 1 B 388 MET VAL LYS LEU PHE SER PHE LEU LEU LEU VAL TRP VAL SEQRES 2 B 388 ALA SER PRO ALA PHE SER SER GLU PHE LEU LYS ALA SER SEQRES 3 B 388 GLY SER ASN PHE TYR TYR GLY GLY GLN LYS VAL PHE LEU SEQRES 4 B 388 SER GLY VAL ASN PHE ALA TRP ARG SER TYR GLY SER ASP SEQRES 5 B 388 PHE GLY ASN GLY GLN TYR ALA SER ASN GLY PRO ALA LEU SEQRES 6 B 388 LYS ASP TRP ILE ASN LYS VAL LYS ALA SER GLY GLY ASN SEQRES 7 B 388 THR ALA ARG VAL TRP VAL HIS VAL GLU GLY GLN VAL SER SEQRES 8 B 388 PRO ALA PHE ASP SER HIS GLY PHE VAL THR SER THR ASP SEQRES 9 B 388 SER LYS LYS THR LEU ILE ASN ASP LEU SER ASP LEU LEU SEQRES 10 B 388 ASP TYR ALA ASN GLY GLN ASN VAL PHE LEU ILE LEU VAL SEQRES 11 B 388 LEU PHE ASN GLY ALA LEU GLN ASN ASN SER ASN VAL GLN SEQRES 12 B 388 ASN LEU PHE TRP ASP GLU SER LYS LEU ASN SER TYR ILE SEQRES 13 B 388 ASN ASN ALA LEU THR PRO MET VAL ASN ALA LEU LYS SER SEQRES 14 B 388 LYS PRO SER LEU ALA ALA TRP GLU VAL LEU ASN GLU PRO SEQRES 15 B 388 GLU GLY THR LEU GLN PRO GLY SER ASP GLN ASN SER CYS SEQRES 16 B 388 TYR ASP THR SER THR LEU ALA ALA GLN GLY ALA GLY TRP SEQRES 17 B 388 GLY GLY LYS LYS PHE PRO MET LYS GLN ILE LEU LYS THR SEQRES 18 B 388 ILE ASN TRP ILE SER SER ALA ILE HIS ASN ALA ASP SER SEQRES 19 B 388 LYS ALA LEU VAL THR VAL GLY SER TRP SER GLU LEU THR SEQRES 20 B 388 GLN THR ASP SER PHE GLY TYR ARG ASN HIS TYR LYS ASP SEQRES 21 B 388 SER CYS LEU THR GLY ALA GLY GLY LYS SER ASN GLY ILE SEQRES 22 B 388 ILE ASN PHE TYR GLN MET HIS THR TYR SER HIS SER GLY SEQRES 23 B 388 LYS TRP ASN GLN ASN ALA PRO PHE LYS VAL ASN ARG TRP SEQRES 24 B 388 ALA TYR ASN VAL ASN ASP LYS PRO LEU LEU ILE GLY GLU SEQRES 25 B 388 PHE ALA SER VAL CYS SER GLN ASN GLU GLY ILE GLN ASN SEQRES 26 B 388 LEU TYR LYS TYR ALA TYR ASN ASN GLY TYR ASN GLY ALA SEQRES 27 B 388 LEU THR TRP GLN PHE ASN SER GLY GLY ASP CYS SER ASP SEQRES 28 B 388 THR TYR SER ASN GLN MET TYR GLY MET GLN ALA LEU LYS SEQRES 29 B 388 GLY GLN ASN ASP GLN SER GLY GLY LYS GLY GLY MET VAL SEQRES 30 B 388 SER VAL ASN ILE ASN HIS HIS HIS HIS HIS HIS SEQRES 1 A 388 MET VAL LYS LEU PHE SER PHE LEU LEU LEU VAL TRP VAL SEQRES 2 A 388 ALA SER PRO ALA PHE SER SER GLU PHE LEU LYS ALA SER SEQRES 3 A 388 GLY SER ASN PHE TYR TYR GLY GLY GLN LYS VAL PHE LEU SEQRES 4 A 388 SER GLY VAL ASN PHE ALA TRP ARG SER TYR GLY SER ASP SEQRES 5 A 388 PHE GLY ASN GLY GLN TYR ALA SER ASN GLY PRO ALA LEU SEQRES 6 A 388 LYS ASP TRP ILE ASN LYS VAL LYS ALA SER GLY GLY ASN SEQRES 7 A 388 THR ALA ARG VAL TRP VAL HIS VAL GLU GLY GLN VAL SER SEQRES 8 A 388 PRO ALA PHE ASP SER HIS GLY PHE VAL THR SER THR ASP SEQRES 9 A 388 SER LYS LYS THR LEU ILE ASN ASP LEU SER ASP LEU LEU SEQRES 10 A 388 ASP TYR ALA ASN GLY GLN ASN VAL PHE LEU ILE LEU VAL SEQRES 11 A 388 LEU PHE ASN GLY ALA LEU GLN ASN ASN SER ASN VAL GLN SEQRES 12 A 388 ASN LEU PHE TRP ASP GLU SER LYS LEU ASN SER TYR ILE SEQRES 13 A 388 ASN ASN ALA LEU THR PRO MET VAL ASN ALA LEU LYS SER SEQRES 14 A 388 LYS PRO SER LEU ALA ALA TRP GLU VAL LEU ASN GLU PRO SEQRES 15 A 388 GLU GLY THR LEU GLN PRO GLY SER ASP GLN ASN SER CYS SEQRES 16 A 388 TYR ASP THR SER THR LEU ALA ALA GLN GLY ALA GLY TRP SEQRES 17 A 388 GLY GLY LYS LYS PHE PRO MET LYS GLN ILE LEU LYS THR SEQRES 18 A 388 ILE ASN TRP ILE SER SER ALA ILE HIS ASN ALA ASP SER SEQRES 19 A 388 LYS ALA LEU VAL THR VAL GLY SER TRP SER GLU LEU THR SEQRES 20 A 388 GLN THR ASP SER PHE GLY TYR ARG ASN HIS TYR LYS ASP SEQRES 21 A 388 SER CYS LEU THR GLY ALA GLY GLY LYS SER ASN GLY ILE SEQRES 22 A 388 ILE ASN PHE TYR GLN MET HIS THR TYR SER HIS SER GLY SEQRES 23 A 388 LYS TRP ASN GLN ASN ALA PRO PHE LYS VAL ASN ARG TRP SEQRES 24 A 388 ALA TYR ASN VAL ASN ASP LYS PRO LEU LEU ILE GLY GLU SEQRES 25 A 388 PHE ALA SER VAL CYS SER GLN ASN GLU GLY ILE GLN ASN SEQRES 26 A 388 LEU TYR LYS TYR ALA TYR ASN ASN GLY TYR ASN GLY ALA SEQRES 27 A 388 LEU THR TRP GLN PHE ASN SER GLY GLY ASP CYS SER ASP SEQRES 28 A 388 THR TYR SER ASN GLN MET TYR GLY MET GLN ALA LEU LYS SEQRES 29 A 388 GLY GLN ASN ASP GLN SER GLY GLY LYS GLY GLY MET VAL SEQRES 30 A 388 SER VAL ASN ILE ASN HIS HIS HIS HIS HIS HIS HET TRS B 401 8 HET TRS A 401 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 5 HOH *125(H2 O) HELIX 1 1 GLN B 57 SER B 75 1 19 HELIX 2 2 THR B 108 GLN B 123 1 16 HELIX 3 3 ASN B 139 PHE B 146 1 8 HELIX 4 4 ASP B 148 ALA B 159 1 12 HELIX 5 5 ALA B 159 LYS B 168 1 10 HELIX 6 6 PRO B 182 THR B 185 5 4 HELIX 7 7 PRO B 214 ASP B 233 1 20 HELIX 8 8 SER B 244 GLN B 248 5 5 HELIX 9 9 ASP B 250 TYR B 254 5 5 HELIX 10 10 LYS B 259 GLY B 268 1 10 HELIX 11 11 ALA B 292 VAL B 296 5 5 HELIX 12 12 ARG B 298 ASN B 302 5 5 HELIX 13 13 SER B 315 SER B 318 5 4 HELIX 14 14 GLY B 322 ASN B 333 1 12 HELIX 15 15 THR B 352 ALA B 362 1 11 HELIX 16 16 GLN A 57 SER A 75 1 19 HELIX 17 17 THR A 108 GLN A 123 1 16 HELIX 18 18 ASN A 139 ASN A 144 1 6 HELIX 19 19 LEU A 145 TRP A 147 5 3 HELIX 20 20 ASP A 148 ALA A 159 1 12 HELIX 21 21 ALA A 159 LYS A 168 1 10 HELIX 22 22 PRO A 182 LEU A 186 5 5 HELIX 23 23 LEU A 201 GLY A 205 5 5 HELIX 24 24 PRO A 214 ASP A 233 1 20 HELIX 25 25 SER A 244 GLN A 248 5 5 HELIX 26 26 LYS A 259 GLY A 268 1 10 HELIX 27 27 ALA A 292 VAL A 296 5 5 HELIX 28 28 ALA A 314 SER A 318 5 5 HELIX 29 29 GLY A 322 ASN A 333 1 12 HELIX 30 30 THR A 352 ALA A 362 1 11 SHEET 1 A 3 LYS B 24 SER B 26 0 SHEET 2 A 3 ASN B 29 TYR B 32 -1 O TYR B 31 N LYS B 24 SHEET 3 A 3 GLN B 35 VAL B 37 -1 O VAL B 37 N PHE B 30 SHEET 1 B 8 VAL B 238 GLY B 241 0 SHEET 2 B 8 LEU B 173 ASN B 180 1 N TRP B 176 O THR B 239 SHEET 3 B 8 PHE B 126 ASN B 133 1 N LEU B 131 O GLU B 177 SHEET 4 B 8 THR B 79 VAL B 86 1 N ALA B 80 O PHE B 126 SHEET 5 B 8 LEU B 39 ASN B 43 1 N VAL B 42 O ARG B 81 SHEET 6 B 8 GLY B 337 THR B 340 1 O ALA B 338 N LEU B 39 SHEET 7 B 8 LEU B 308 PHE B 313 1 N ILE B 310 O LEU B 339 SHEET 8 B 8 TYR B 277 THR B 281 1 N MET B 279 O GLY B 311 SHEET 1 C 2 ALA B 93 PHE B 94 0 SHEET 2 C 2 VAL B 100 SER B 102 -1 O SER B 102 N ALA B 93 SHEET 1 D 3 LYS A 24 SER A 26 0 SHEET 2 D 3 ASN A 29 TYR A 32 -1 O ASN A 29 N SER A 26 SHEET 3 D 3 GLN A 35 VAL A 37 -1 O GLN A 35 N TYR A 32 SHEET 1 E 8 VAL A 238 GLY A 241 0 SHEET 2 E 8 LEU A 173 ASN A 180 1 N VAL A 178 O THR A 239 SHEET 3 E 8 PHE A 126 ASN A 133 1 N LEU A 129 O GLU A 177 SHEET 4 E 8 THR A 79 VAL A 86 1 N ALA A 80 O PHE A 126 SHEET 5 E 8 LEU A 39 ASN A 43 1 N VAL A 42 O ARG A 81 SHEET 6 E 8 GLY A 337 THR A 340 1 O THR A 340 N ASN A 43 SHEET 7 E 8 LEU A 308 PHE A 313 1 N ILE A 310 O GLY A 337 SHEET 8 E 8 TYR A 277 HIS A 280 1 N TYR A 277 O LEU A 309 SHEET 1 F 2 ALA A 93 PHE A 94 0 SHEET 2 F 2 VAL A 100 SER A 102 -1 O THR A 101 N ALA A 93 SHEET 1 G 2 ASN A 367 ASP A 368 0 SHEET 2 G 2 GLY A 375 MET A 376 -1 O GLY A 375 N ASP A 368 SSBOND 1 CYS B 195 CYS B 262 1555 1555 2.05 SSBOND 2 CYS B 317 CYS B 349 1555 1555 2.00 SSBOND 3 CYS A 195 CYS A 262 1555 1555 2.01 SSBOND 4 CYS A 317 CYS A 349 1555 1555 2.02 CISPEP 1 PHE B 44 ALA B 45 0 -12.51 CISPEP 2 SER B 91 PRO B 92 0 -20.72 CISPEP 3 TRP B 341 GLN B 342 0 -14.04 CISPEP 4 PHE A 44 ALA A 45 0 -15.43 CISPEP 5 SER A 91 PRO A 92 0 -12.09 CISPEP 6 TRP A 341 GLN A 342 0 -11.30 SITE 1 AC1 5 TRP B 83 ASN B 180 GLU B 181 GLU B 312 SITE 2 AC1 5 TRP B 341 SITE 1 AC2 4 ASN A 180 GLU A 181 GLU A 312 TRP A 341 CRYST1 74.237 84.476 164.057 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006095 0.00000