HEADER VIRAL PROTEIN 05-FEB-14 4OP7 TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN NSW0514 IN COMPLEX TITLE 2 WITH HBGA TYPE B (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN NSW0514 (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/SYDNEY/NSW0514/2012/AU; SOURCE 3 ORGANISM_TAXID: 1241973; SOURCE 4 GENE: JX459908; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, VIRAL CAPSID PROTEIN, HISTO BLOOD GROUP ANTIGEN (HBGA), KEYWDS 2 PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 4 28-FEB-24 4OP7 1 HETSYN REVDAT 3 29-JUL-20 4OP7 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-FEB-15 4OP7 1 JRNL REVDAT 1 17-DEC-14 4OP7 0 JRNL AUTH B.K.SINGH,M.M.LEUTHOLD,G.S.HANSMAN JRNL TITL HUMAN NOROVIRUSES' FONDNESS FOR HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2024 2015 JRNL REFN ISSN 0022-538X JRNL PMID 25428879 JRNL DOI 10.1128/JVI.02968-14 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 76345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2026 - 5.7569 0.84 2644 138 0.1815 0.2003 REMARK 3 2 5.7569 - 4.5706 0.89 2641 140 0.1356 0.1361 REMARK 3 3 4.5706 - 3.9931 0.90 2630 138 0.1253 0.1405 REMARK 3 4 3.9931 - 3.6282 0.91 2628 137 0.1459 0.1587 REMARK 3 5 3.6282 - 3.3682 0.91 2634 139 0.1551 0.1955 REMARK 3 6 3.3682 - 3.1697 0.91 2635 138 0.1548 0.1624 REMARK 3 7 3.1697 - 3.0109 0.93 2665 140 0.1528 0.1763 REMARK 3 8 3.0109 - 2.8799 0.93 2680 141 0.1660 0.1950 REMARK 3 9 2.8799 - 2.7690 0.93 2650 140 0.1665 0.2235 REMARK 3 10 2.7690 - 2.6735 0.94 2679 141 0.1694 0.2138 REMARK 3 11 2.6735 - 2.5899 0.94 2691 142 0.1792 0.2287 REMARK 3 12 2.5899 - 2.5159 0.95 2681 141 0.1846 0.2110 REMARK 3 13 2.5159 - 2.4496 0.95 2706 143 0.1935 0.2356 REMARK 3 14 2.4496 - 2.3899 0.96 2707 142 0.2044 0.2350 REMARK 3 15 2.3899 - 2.3356 0.95 2701 143 0.2035 0.2740 REMARK 3 16 2.3356 - 2.2859 0.96 2714 143 0.2070 0.2164 REMARK 3 17 2.2859 - 2.2401 0.96 2726 143 0.2142 0.2589 REMARK 3 18 2.2401 - 2.1979 0.96 2723 144 0.2084 0.2283 REMARK 3 19 2.1979 - 2.1586 0.96 2711 142 0.2316 0.2573 REMARK 3 20 2.1586 - 2.1220 0.96 2722 144 0.2403 0.2905 REMARK 3 21 2.1220 - 2.0878 0.96 2701 142 0.2488 0.2946 REMARK 3 22 2.0878 - 2.0557 0.95 2693 142 0.2950 0.3255 REMARK 3 23 2.0557 - 2.0254 0.95 2674 141 0.3088 0.3076 REMARK 3 24 2.0254 - 1.9969 0.97 2722 143 0.2931 0.2990 REMARK 3 25 1.9969 - 1.9699 0.96 2722 144 0.2957 0.3061 REMARK 3 26 1.9699 - 1.9443 0.97 2723 143 0.3029 0.2903 REMARK 3 27 1.9443 - 1.9200 0.96 2725 143 0.3312 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4983 REMARK 3 ANGLE : 1.102 6814 REMARK 3 CHIRALITY : 0.044 750 REMARK 3 PLANARITY : 0.007 893 REMARK 3 DIHEDRAL : 13.584 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9611 15.4986 -14.9660 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.1360 REMARK 3 T33: 0.1334 T12: -0.0004 REMARK 3 T13: 0.0186 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0382 L22: 0.5707 REMARK 3 L33: 2.7825 L12: -0.1054 REMARK 3 L13: -0.1726 L23: 0.4691 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: -0.0403 S13: -0.0365 REMARK 3 S21: -0.0401 S22: 0.0578 S23: -0.0268 REMARK 3 S31: 0.0476 S32: 0.0204 S33: -0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7533 8.5902 -34.2959 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.1308 REMARK 3 T33: 0.1560 T12: -0.0012 REMARK 3 T13: 0.0308 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.0907 L22: 0.3903 REMARK 3 L33: 2.2337 L12: -0.6798 REMARK 3 L13: 0.4114 L23: -0.2833 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.2329 S13: -0.1636 REMARK 3 S21: -0.1866 S22: -0.0367 S23: 0.0245 REMARK 3 S31: 0.0764 S32: 0.0487 S33: 0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2956 13.1902 -5.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.2041 REMARK 3 T33: 0.1445 T12: -0.0022 REMARK 3 T13: 0.0093 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 0.6753 L22: 1.1748 REMARK 3 L33: 1.8973 L12: -0.0595 REMARK 3 L13: 0.2253 L23: 0.5486 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.2114 S13: -0.0666 REMARK 3 S21: 0.1926 S22: 0.0016 S23: -0.0180 REMARK 3 S31: 0.0294 S32: 0.0477 S33: 0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3683 29.2717 -23.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.1645 REMARK 3 T33: 0.1993 T12: 0.0442 REMARK 3 T13: -0.0450 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.1845 L22: 2.6366 REMARK 3 L33: 1.2997 L12: -0.0238 REMARK 3 L13: -0.3350 L23: 0.4848 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.0143 S13: 0.1765 REMARK 3 S21: 0.2279 S22: 0.1946 S23: -0.4744 REMARK 3 S31: -0.1884 S32: -0.0214 S33: -0.1207 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7919 12.4668 -27.2126 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.2266 REMARK 3 T33: 0.1976 T12: -0.0091 REMARK 3 T13: -0.0313 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.0691 L22: 3.6377 REMARK 3 L33: 1.3083 L12: -0.4920 REMARK 3 L13: -0.3459 L23: -0.8144 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.1230 S13: -0.2641 REMARK 3 S21: -0.1655 S22: -0.0463 S23: 0.3240 REMARK 3 S31: 0.0074 S32: -0.2857 S33: 0.0084 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 399 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9452 38.6261 -25.7867 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.2032 REMARK 3 T33: 0.4142 T12: -0.0013 REMARK 3 T13: 0.0136 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 0.6873 L22: 2.3024 REMARK 3 L33: 1.4104 L12: -1.0504 REMARK 3 L13: -0.4268 L23: 0.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: 0.0489 S13: 0.4383 REMARK 3 S21: -0.0377 S22: 0.1931 S23: -0.7396 REMARK 3 S31: -0.3240 S32: 0.2114 S33: -0.2155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2808 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978174 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.01200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.27000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.30500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.63500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.30500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.90500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.30500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.63500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.30500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.90500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 ARG A 397 NE CZ NH1 NH2 REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 412 CG OD1 ND2 REMARK 470 ARG A 516 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 523 CG CD OE1 NE2 REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 470 ASN B 307 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 GLA C 3 O HOH A 938 1.93 REMARK 500 O HOH B 881 O HOH B 898 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 25.07 -146.95 REMARK 500 ARG A 373 -15.92 -151.62 REMARK 500 SER A 442 144.71 -173.74 REMARK 500 ASP A 518 -67.00 -96.59 REMARK 500 SER B 254 24.30 -148.37 REMARK 500 ARG B 373 -14.97 -153.40 REMARK 500 SER B 442 146.59 -173.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN NSW0514 REMARK 900 RELATED ID: 4OPO RELATED DB: PDB REMARK 900 RELATED ID: 4OOV RELATED DB: PDB REMARK 900 RELATED ID: 4OPS RELATED DB: PDB REMARK 900 RELATED ID: 4OP7 RELATED DB: PDB DBREF 4OP7 A 225 530 UNP K4LM89 K4LM89_9CALI 225 530 DBREF 4OP7 B 225 530 UNP K4LM89 K4LM89_9CALI 225 530 SEQADV 4OP7 SER A 224 UNP K4LM89 EXPRESSION TAG SEQADV 4OP7 SER B 224 UNP K4LM89 EXPRESSION TAG SEQRES 1 A 307 SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL GLU GLU SEQRES 2 A 307 MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 A 307 PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 A 307 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 A 307 THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY SEQRES 6 A 307 ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR THR MET SEQRES 7 A 307 ASN LEU ALA SER GLN ASN TRP ASN ASP TYR ASP PRO THR SEQRES 8 A 307 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 A 307 GLY LYS ILE GLN GLY VAL LEU THR GLN THR THR ARG THR SEQRES 10 A 307 ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR THR SEQRES 11 A 307 GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG VAL GLN SEQRES 12 A 307 PHE GLU THR ASP THR ASP ARG ASP PHE GLU ALA ASN GLN SEQRES 13 A 307 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 A 307 GLY THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL LEU SEQRES 15 A 307 PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL HIS LEU SEQRES 16 A 307 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU SEQRES 17 A 307 LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR SEQRES 18 A 307 PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU TRP SEQRES 19 A 307 VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA GLN SER SEQRES 20 A 307 ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY SEQRES 21 A 307 ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR SEQRES 22 A 307 VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE SEQRES 23 A 307 PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 A 307 GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 307 SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL GLU GLU SEQRES 2 B 307 MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 B 307 PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 B 307 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 B 307 THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY SEQRES 6 B 307 ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR THR MET SEQRES 7 B 307 ASN LEU ALA SER GLN ASN TRP ASN ASP TYR ASP PRO THR SEQRES 8 B 307 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 B 307 GLY LYS ILE GLN GLY VAL LEU THR GLN THR THR ARG THR SEQRES 10 B 307 ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR THR SEQRES 11 B 307 GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG VAL GLN SEQRES 12 B 307 PHE GLU THR ASP THR ASP ARG ASP PHE GLU ALA ASN GLN SEQRES 13 B 307 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 B 307 GLY THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL LEU SEQRES 15 B 307 PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL HIS LEU SEQRES 16 B 307 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU SEQRES 17 B 307 LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR SEQRES 18 B 307 PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU TRP SEQRES 19 B 307 VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA GLN SER SEQRES 20 B 307 ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY SEQRES 21 B 307 ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR SEQRES 22 B 307 VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE SEQRES 23 B 307 PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN SEQRES 24 B 307 GLN PHE TYR THR LEU ALA PRO MET HET GLA C 1 12 HET FUC C 2 10 HET GLA C 3 11 HET GLA D 1 12 HET FUC D 2 10 HET GLA D 3 11 HET IMD B 604 5 HET IMD B 605 5 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM IMD IMIDAZOLE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 GLA 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 IMD 2(C3 H5 N2 1+) FORMUL 7 HOH *492(H2 O) HELIX 1 1 THR A 233 MET A 237 5 5 HELIX 2 2 ALA A 359 LEU A 362 5 4 HELIX 3 3 PRO A 454 ALA A 465 1 12 HELIX 4 4 THR B 233 MET B 237 5 5 HELIX 5 5 ALA B 359 LEU B 362 5 4 HELIX 6 6 PRO B 454 ALA B 465 1 12 SHEET 1 A 4 ASP A 448 CYS A 451 0 SHEET 2 A 4 GLU A 429 THR A 437 -1 N SER A 436 O LEU A 449 SHEET 3 A 4 LYS A 248 GLY A 252 -1 N PHE A 250 O PHE A 433 SHEET 4 A 4 HIS A 505 ASP A 506 -1 O HIS A 505 N THR A 251 SHEET 1 B 6 ASP A 448 CYS A 451 0 SHEET 2 B 6 GLU A 429 THR A 437 -1 N SER A 436 O LEU A 449 SHEET 3 B 6 TYR A 496 ALA A 500 -1 O VAL A 497 N LEU A 432 SHEET 4 B 6 VAL A 485 HIS A 492 -1 N HIS A 492 O TYR A 496 SHEET 5 B 6 VAL A 472 VAL A 478 -1 N ALA A 473 O LEU A 491 SHEET 6 B 6 TYR A 514 VAL A 521 -1 O ASP A 518 N LEU A 474 SHEET 1 C 8 THR B 381 ILE B 389 0 SHEET 2 C 8 GLY B 440 GLY B 443 1 O CYS B 441 N VAL B 388 SHEET 3 C 8 THR A 344 TYR A 352 -1 N THR A 344 O GLY B 443 SHEET 4 C 8 LYS A 329 THR A 337 -1 N LEU A 334 O HIS A 347 SHEET 5 C 8 THR A 381 ILE A 389 -1 O LYS A 382 N THR A 335 SHEET 6 C 8 PHE A 286 HIS A 292 -1 N PHE A 286 O PHE A 383 SHEET 7 C 8 ASN A 298 LEU A 303 -1 O ASN A 302 N ASP A 289 SHEET 8 C 8 ARG A 364 THR A 369 -1 O VAL A 365 N MET A 301 SHEET 1 D 6 THR B 344 TYR B 352 0 SHEET 2 D 6 ARG B 364 THR B 369 -1 O GLU B 368 N THR B 350 SHEET 3 D 6 ASN B 298 LEU B 303 -1 N MET B 301 O VAL B 365 SHEET 4 D 6 PHE B 286 HIS B 292 -1 N THR B 291 O THR B 300 SHEET 5 D 6 THR B 381 ILE B 389 -1 O PHE B 383 N PHE B 286 SHEET 6 D 6 LYS B 329 THR B 337 -1 N THR B 335 O LYS B 382 SHEET 1 E 3 THR B 344 TYR B 352 0 SHEET 2 E 3 GLY A 440 GLY A 443 -1 N GLY A 443 O THR B 344 SHEET 3 E 3 THR A 381 ILE A 389 1 N VAL A 388 O CYS A 441 SHEET 1 F 4 ASP B 448 CYS B 451 0 SHEET 2 F 4 GLU B 429 THR B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 F 4 LYS B 248 GLY B 252 -1 N PHE B 250 O PHE B 433 SHEET 4 F 4 HIS B 505 ASP B 506 -1 O HIS B 505 N THR B 251 SHEET 1 G 6 ASP B 448 CYS B 451 0 SHEET 2 G 6 GLU B 429 THR B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 G 6 TYR B 496 ALA B 500 -1 O VAL B 497 N LEU B 432 SHEET 4 G 6 VAL B 485 HIS B 492 -1 N HIS B 492 O TYR B 496 SHEET 5 G 6 VAL B 472 VAL B 478 -1 N ALA B 473 O LEU B 491 SHEET 6 G 6 TYR B 514 VAL B 521 -1 O SER B 519 N LEU B 474 LINK O2 GLA C 1 C1 FUC C 2 1555 1555 1.44 LINK O3 GLA C 1 C1 GLA C 3 1555 1555 1.44 LINK O2 GLA D 1 C1 FUC D 2 1555 1555 1.44 LINK O3 GLA D 1 C1 GLA D 3 1555 1555 1.44 CISPEP 1 GLU A 399 PRO A 400 0 -3.51 CISPEP 2 GLU B 399 PRO B 400 0 -3.69 CRYST1 104.610 104.610 190.540 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005248 0.00000