HEADER VIRAL PROTEIN 06-FEB-14 4OPS TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN FARMINGTON HILLS TITLE 2 2004 IN COMPLEX WITH HBGA TYPE LEB (TETRAGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN FARMINGTON HILLS 2004 (RESIDUES 225 TO 530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/FARMINGTON HILLS/2004/USA; SOURCE 3 ORGANISM_TAXID: 1182143; SOURCE 4 GENE: JQ478408; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, VIRAL CAPSID PROTEIN, HISTO BLOOD GROUP ANTIGEN (HBGA), KEYWDS 2 PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,M.LEUTHOLD,G.S.HANSMAN REVDAT 4 28-FEB-24 4OPS 1 HETSYN REVDAT 3 29-JUL-20 4OPS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 11-FEB-15 4OPS 1 JRNL REVDAT 1 17-DEC-14 4OPS 0 JRNL AUTH B.K.SINGH,M.M.LEUTHOLD,G.S.HANSMAN JRNL TITL HUMAN NOROVIRUSES' FONDNESS FOR HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2024 2015 JRNL REFN ISSN 0022-538X JRNL PMID 25428879 JRNL DOI 10.1128/JVI.02968-14 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 57869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8257 - 4.8541 0.99 2856 151 0.1469 0.1766 REMARK 3 2 4.8541 - 3.8534 0.98 2707 142 0.1326 0.1441 REMARK 3 3 3.8534 - 3.3664 0.97 2656 140 0.1630 0.1886 REMARK 3 4 3.3664 - 3.0587 0.99 2705 143 0.1770 0.1991 REMARK 3 5 3.0587 - 2.8395 0.99 2687 141 0.1766 0.1893 REMARK 3 6 2.8395 - 2.6721 1.00 2684 141 0.1677 0.2158 REMARK 3 7 2.6721 - 2.5383 0.99 2673 141 0.1702 0.2030 REMARK 3 8 2.5383 - 2.4278 1.00 2664 140 0.1706 0.2134 REMARK 3 9 2.4278 - 2.3343 1.00 2672 141 0.1679 0.2024 REMARK 3 10 2.3343 - 2.2538 0.97 2609 138 0.1972 0.2704 REMARK 3 11 2.2538 - 2.1833 0.94 2522 130 0.2560 0.3098 REMARK 3 12 2.1833 - 2.1209 1.00 2658 140 0.1854 0.1890 REMARK 3 13 2.1209 - 2.0651 0.97 2587 136 0.2189 0.3173 REMARK 3 14 2.0651 - 2.0147 0.98 2595 137 0.2170 0.2385 REMARK 3 15 2.0147 - 1.9689 1.00 2671 140 0.1971 0.2197 REMARK 3 16 1.9689 - 1.9270 0.89 2353 124 0.3419 0.3794 REMARK 3 17 1.9270 - 1.8884 0.80 2102 112 0.5111 0.5335 REMARK 3 18 1.8884 - 1.8528 0.98 2636 139 0.2593 0.2899 REMARK 3 19 1.8528 - 1.8197 1.00 2633 139 0.1876 0.2453 REMARK 3 20 1.8197 - 1.7889 1.00 2652 139 0.1774 0.2252 REMARK 3 21 1.7889 - 1.7600 1.00 2653 140 0.2068 0.2758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4932 REMARK 3 ANGLE : 1.362 6746 REMARK 3 CHIRALITY : 0.058 749 REMARK 3 PLANARITY : 0.008 894 REMARK 3 DIHEDRAL : 13.333 1770 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0374 104.1133 30.0678 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1333 REMARK 3 T33: 0.1209 T12: 0.0038 REMARK 3 T13: -0.0078 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.7991 L22: 1.7902 REMARK 3 L33: 1.6077 L12: -0.0533 REMARK 3 L13: -0.2783 L23: 1.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0813 S13: 0.0038 REMARK 3 S21: -0.0249 S22: -0.0284 S23: 0.0066 REMARK 3 S31: -0.0402 S32: 0.0003 S33: 0.0227 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8502 111.7608 41.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1885 REMARK 3 T33: 0.1361 T12: -0.0370 REMARK 3 T13: -0.0267 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.1103 L22: 3.5640 REMARK 3 L33: 1.4770 L12: -0.3856 REMARK 3 L13: -0.7760 L23: -0.1001 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: -0.1659 S13: 0.1237 REMARK 3 S21: 0.2839 S22: -0.0920 S23: -0.2610 REMARK 3 S31: -0.0830 S32: 0.0979 S33: 0.0080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7248 91.6344 20.2432 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1222 REMARK 3 T33: 0.1438 T12: 0.0072 REMARK 3 T13: 0.0026 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.9568 L22: 1.2094 REMARK 3 L33: 1.0502 L12: 0.1909 REMARK 3 L13: 0.0395 L23: 0.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0981 S13: -0.0707 REMARK 3 S21: -0.1161 S22: -0.0466 S23: -0.0649 REMARK 3 S31: 0.0483 S32: 0.0492 S33: 0.0274 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2833 118.7113 15.4723 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.1325 REMARK 3 T33: 0.1566 T12: 0.0080 REMARK 3 T13: 0.0039 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.1792 L22: 0.3066 REMARK 3 L33: 0.7490 L12: -0.5318 REMARK 3 L13: 0.7095 L23: -0.4096 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: -0.0083 S13: -0.0586 REMARK 3 S21: -0.0172 S22: -0.0008 S23: -0.0097 REMARK 3 S31: 0.0984 S32: 0.0091 S33: -0.0508 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4284 114.3443 18.5903 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1829 REMARK 3 T33: 0.1730 T12: 0.0285 REMARK 3 T13: 0.0286 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.6454 L22: 2.1355 REMARK 3 L33: 2.0465 L12: -0.2958 REMARK 3 L13: 0.1774 L23: -1.6533 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: 0.1688 S13: -0.1215 REMARK 3 S21: -0.3278 S22: -0.1803 S23: -0.1095 REMARK 3 S31: 0.3289 S32: -0.1011 S33: 0.0761 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2272 113.9927 30.3129 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1866 REMARK 3 T33: 0.1501 T12: -0.0206 REMARK 3 T13: -0.0103 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.9555 L22: 5.2262 REMARK 3 L33: 3.3232 L12: -1.4940 REMARK 3 L13: 0.9007 L23: -3.1694 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.1455 S13: -0.0379 REMARK 3 S21: 0.1585 S22: -0.0476 S23: -0.0758 REMARK 3 S31: -0.0337 S32: 0.1198 S33: 0.0238 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 353 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5650 117.4844 27.1944 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.2143 REMARK 3 T33: 0.1820 T12: 0.0084 REMARK 3 T13: -0.0202 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.8506 L22: 3.2104 REMARK 3 L33: 1.9852 L12: -0.5125 REMARK 3 L13: 0.5729 L23: -1.3463 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0882 S13: 0.0413 REMARK 3 S21: 0.1803 S22: -0.1824 S23: -0.2931 REMARK 3 S31: -0.0513 S32: 0.1406 S33: 0.1951 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 381 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8485 127.2842 30.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.1789 REMARK 3 T33: 0.2054 T12: -0.0309 REMARK 3 T13: -0.0281 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.3806 L22: 4.2087 REMARK 3 L33: 1.8110 L12: -2.8670 REMARK 3 L13: -0.7473 L23: -0.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.2181 S13: 0.3678 REMARK 3 S21: 0.4097 S22: 0.0903 S23: -0.4377 REMARK 3 S31: -0.3810 S32: 0.0600 S33: -0.1351 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 400 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6205 125.3004 15.0811 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1262 REMARK 3 T33: 0.1370 T12: 0.0169 REMARK 3 T13: 0.0086 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.6462 L22: 1.0777 REMARK 3 L33: 1.8507 L12: -0.1377 REMARK 3 L13: 0.5007 L23: 0.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.1137 S13: 0.2140 REMARK 3 S21: -0.0269 S22: -0.0476 S23: -0.0041 REMARK 3 S31: -0.0588 S32: 0.0631 S33: 0.0190 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6190 123.8190 9.6843 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.1111 REMARK 3 T33: 0.1244 T12: -0.0146 REMARK 3 T13: -0.0178 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.4297 L22: 2.8724 REMARK 3 L33: 3.4349 L12: -1.1260 REMARK 3 L13: -0.4169 L23: 0.1948 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0079 S13: -0.0528 REMARK 3 S21: 0.0651 S22: 0.0614 S23: 0.1760 REMARK 3 S31: 0.1024 S32: -0.3349 S33: -0.0422 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 514 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4968 124.4966 2.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.2061 REMARK 3 T33: 0.1949 T12: -0.0200 REMARK 3 T13: -0.0215 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5440 L22: 4.8959 REMARK 3 L33: 5.1131 L12: -2.5046 REMARK 3 L13: 0.9433 L23: 0.5807 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.1372 S13: 0.1301 REMARK 3 S21: -0.3746 S22: -0.1030 S23: 0.0585 REMARK 3 S31: -0.2128 S32: -0.2512 S33: 0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2808 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 97.345 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 393 CG OD1 ND2 REMARK 470 GLU B 235 CD OE1 OE2 REMARK 470 ASP B 355 CG OD1 OD2 REMARK 470 ASP B 391 CG OD1 OD2 REMARK 470 ASN B 393 CG OD1 ND2 REMARK 470 THR B 412 OG1 CG2 REMARK 470 ARG B 484 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 751 O HOH A 753 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 373 -11.35 -155.42 REMARK 500 SER A 442 143.21 -170.58 REMARK 500 GLN B 260 53.45 -140.28 REMARK 500 ASN B 373 -16.37 -155.64 REMARK 500 SER B 442 141.82 -173.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN FARMINGTON REMARK 900 HILLS 2004 REMARK 900 RELATED ID: 4OOS RELATED DB: PDB REMARK 900 RELATED ID: 4OP7 RELATED DB: PDB REMARK 900 RELATED ID: 4OOX RELATED DB: PDB DBREF 4OPS A 225 530 UNP R4I4P2 R4I4P2_9CALI 225 530 DBREF 4OPS B 225 530 UNP R4I4P2 R4I4P2_9CALI 225 530 SEQRES 1 A 306 LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU GLU MET SEQRES 2 A 306 THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU PHE SEQRES 3 A 306 THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO GLN ASN SEQRES 4 A 306 GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR THR SEQRES 5 A 306 GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY ASP SEQRES 6 A 306 VAL THR HIS ILE ALA GLY THR HIS ASN TYR THR MET ASN SEQRES 7 A 306 LEU ALA SER GLN ASN TRP ASN ASN TYR ASP PRO THR GLU SEQRES 8 A 306 GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL GLY SEQRES 9 A 306 ARG ILE GLN GLY MET LEU THR GLN THR THR ARG GLY ASP SEQRES 10 A 306 GLY SER THR ARG GLY HIS LYS ALA THR VAL SER THR GLY SEQRES 11 A 306 ASP VAL HIS PHE THR PRO LYS LEU GLY SER ILE GLN PHE SEQRES 12 A 306 ASN THR ASP THR ASN ASN ASP PHE GLU THR GLY GLN ASN SEQRES 13 A 306 THR LYS PHE THR PRO VAL GLY VAL VAL GLN ASP GLY ASN SEQRES 14 A 306 GLY ALA HIS GLN ASN GLU PRO GLN GLN TRP VAL LEU PRO SEQRES 15 A 306 SER TYR SER GLY ARG THR GLY HIS ASN VAL HIS LEU ALA SEQRES 16 A 306 PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU LEU SEQRES 17 A 306 PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR PRO SEQRES 18 A 306 ASN MET ASN LEU ASP CYS LEU LEU PRO GLN GLU TRP VAL SEQRES 19 A 306 GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SER ASP SEQRES 20 A 306 VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY ARG SEQRES 21 A 306 VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR VAL SEQRES 22 A 306 THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE PRO SEQRES 23 A 306 PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 24 A 306 PHE TYR THR LEU ALA PRO MET SEQRES 1 B 306 LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU GLU MET SEQRES 2 B 306 THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU PHE SEQRES 3 B 306 THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO GLN ASN SEQRES 4 B 306 GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR THR SEQRES 5 B 306 GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG GLY ASP SEQRES 6 B 306 VAL THR HIS ILE ALA GLY THR HIS ASN TYR THR MET ASN SEQRES 7 B 306 LEU ALA SER GLN ASN TRP ASN ASN TYR ASP PRO THR GLU SEQRES 8 B 306 GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL GLY SEQRES 9 B 306 ARG ILE GLN GLY MET LEU THR GLN THR THR ARG GLY ASP SEQRES 10 B 306 GLY SER THR ARG GLY HIS LYS ALA THR VAL SER THR GLY SEQRES 11 B 306 ASP VAL HIS PHE THR PRO LYS LEU GLY SER ILE GLN PHE SEQRES 12 B 306 ASN THR ASP THR ASN ASN ASP PHE GLU THR GLY GLN ASN SEQRES 13 B 306 THR LYS PHE THR PRO VAL GLY VAL VAL GLN ASP GLY ASN SEQRES 14 B 306 GLY ALA HIS GLN ASN GLU PRO GLN GLN TRP VAL LEU PRO SEQRES 15 B 306 SER TYR SER GLY ARG THR GLY HIS ASN VAL HIS LEU ALA SEQRES 16 B 306 PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU LEU SEQRES 17 B 306 PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR PRO SEQRES 18 B 306 ASN MET ASN LEU ASP CYS LEU LEU PRO GLN GLU TRP VAL SEQRES 19 B 306 GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SER ASP SEQRES 20 B 306 VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY ARG SEQRES 21 B 306 VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR VAL SEQRES 22 B 306 THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL ILE PRO SEQRES 23 B 306 PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 24 B 306 PHE TYR THR LEU ALA PRO MET HET NAG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET FUC C 4 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 HOH *324(H2 O) HELIX 1 1 THR A 233 MET A 237 5 5 HELIX 2 2 THR A 359 LEU A 362 5 4 HELIX 3 3 PRO A 454 ALA A 465 1 12 HELIX 4 4 THR B 233 MET B 237 5 5 HELIX 5 5 THR B 359 LEU B 362 5 4 HELIX 6 6 PRO B 454 ALA B 465 1 12 SHEET 1 A 4 ASN A 448 CYS A 451 0 SHEET 2 A 4 GLU A 429 THR A 437 -1 N PHE A 434 O CYS A 451 SHEET 3 A 4 LYS A 248 GLY A 252 -1 N PHE A 250 O PHE A 433 SHEET 4 A 4 HIS A 505 ASP A 506 -1 O HIS A 505 N THR A 251 SHEET 1 B 6 ASN A 448 CYS A 451 0 SHEET 2 B 6 GLU A 429 THR A 437 -1 N PHE A 434 O CYS A 451 SHEET 3 B 6 TYR A 496 ALA A 500 -1 O VAL A 499 N GLN A 430 SHEET 4 B 6 ARG A 484 HIS A 492 -1 N HIS A 492 O TYR A 496 SHEET 5 B 6 VAL A 472 ASN A 479 -1 N PHE A 477 O LEU A 486 SHEET 6 B 6 TYR A 514 VAL A 521 -1 O SER A 519 N LEU A 474 SHEET 1 C 8 THR B 381 VAL B 389 0 SHEET 2 C 8 GLY B 440 GLY B 443 1 O CYS B 441 N VAL B 388 SHEET 3 C 8 THR A 344 SER A 352 -1 N THR A 344 O GLY B 443 SHEET 4 C 8 ARG A 329 THR A 337 -1 N GLY A 332 O ALA A 349 SHEET 5 C 8 THR A 381 VAL A 389 -1 O LYS A 382 N THR A 335 SHEET 6 C 8 PHE A 286 HIS A 292 -1 N PHE A 286 O PHE A 383 SHEET 7 C 8 ASN A 298 LEU A 303 -1 O ASN A 302 N ASP A 289 SHEET 8 C 8 SER A 364 THR A 369 -1 O PHE A 367 N TYR A 299 SHEET 1 D 6 THR B 344 SER B 352 0 SHEET 2 D 6 SER B 364 THR B 369 -1 O ASN B 368 N THR B 350 SHEET 3 D 6 ASN B 298 LEU B 303 -1 N MET B 301 O ILE B 365 SHEET 4 D 6 PHE B 286 HIS B 292 -1 N THR B 291 O THR B 300 SHEET 5 D 6 THR B 381 VAL B 389 -1 O PHE B 383 N PHE B 286 SHEET 6 D 6 ARG B 329 THR B 337 -1 N THR B 335 O LYS B 382 SHEET 1 E 3 THR B 344 SER B 352 0 SHEET 2 E 3 GLY A 440 GLY A 443 -1 N GLY A 443 O THR B 344 SHEET 3 E 3 THR A 381 VAL A 389 1 N VAL A 388 O CYS A 441 SHEET 1 F 4 ASN B 448 CYS B 451 0 SHEET 2 F 4 GLU B 429 THR B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 F 4 LYS B 248 THR B 251 -1 N PHE B 250 O PHE B 433 SHEET 4 F 4 HIS B 505 ASP B 506 -1 O HIS B 505 N THR B 251 SHEET 1 G 6 ASN B 448 CYS B 451 0 SHEET 2 G 6 GLU B 429 THR B 437 -1 N PHE B 434 O CYS B 451 SHEET 3 G 6 TYR B 496 ALA B 500 -1 O VAL B 499 N GLN B 430 SHEET 4 G 6 VAL B 485 HIS B 492 -1 N HIS B 492 O TYR B 496 SHEET 5 G 6 VAL B 472 VAL B 478 -1 N ALA B 473 O LEU B 491 SHEET 6 G 6 TYR B 514 VAL B 521 -1 O TYR B 514 N VAL B 478 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.44 LINK O4 NAG C 1 C1 FUC C 4 1555 1555 1.44 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.44 CISPEP 1 GLU A 399 PRO A 400 0 -3.21 CISPEP 2 GLU B 399 PRO B 400 0 -3.24 CRYST1 71.450 90.110 91.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010885 0.00000