HEADER OXIDOREDUCTASE 06-FEB-14 4OPU TITLE CONSTRUCTING TAILORED ISOPRENOID PRODUCTS BY STRUCTURE-GUIDED TITLE 2 MODIFICATION OF GERANYLGERANYL REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED ARCHAEAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERANYLGERANYL REDUCTASE; COMPND 5 EC: 1.3.1.83; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 330779; SOURCE 4 STRAIN: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770; SOURCE 5 GENE: SACI_0986; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, ARCHAEAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,Y.KUNG,X.XIE,C.LIU,J.H.PEREIRA,J.D.KEASLING,P.D.ADAMS REVDAT 3 20-NOV-24 4OPU 1 REMARK SEQADV REVDAT 2 23-JUL-14 4OPU 1 JRNL REVDAT 1 09-JUL-14 4OPU 0 JRNL AUTH Y.KUNG,R.P.MCANDREW,X.XIE,C.C.LIU,J.H.PEREIRA,P.D.ADAMS, JRNL AUTH 2 J.D.KEASLING JRNL TITL CONSTRUCTING TAILORED ISOPRENOID PRODUCTS BY JRNL TITL 2 STRUCTURE-GUIDED MODIFICATION OF GERANYLGERANYL REDUCTASE. JRNL REF STRUCTURE V. 22 1028 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24954619 JRNL DOI 10.1016/J.STR.2014.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1525) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 14248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5659 - 5.8132 1.00 1529 169 0.1853 0.2314 REMARK 3 2 5.8132 - 4.6156 0.99 1439 161 0.1577 0.1876 REMARK 3 3 4.6156 - 4.0326 0.97 1395 154 0.1474 0.2009 REMARK 3 4 4.0326 - 3.6641 0.97 1385 154 0.1882 0.2754 REMARK 3 5 3.6641 - 3.4016 0.96 1364 150 0.2141 0.2624 REMARK 3 6 3.4016 - 3.2011 0.90 1257 143 0.2324 0.2949 REMARK 3 7 3.2011 - 3.0408 0.86 1212 131 0.2484 0.3171 REMARK 3 8 3.0408 - 2.9085 0.84 1186 130 0.2789 0.3492 REMARK 3 9 2.9085 - 2.7965 0.78 1094 125 0.3094 0.3457 REMARK 3 10 2.7965 - 2.7000 0.69 964 106 0.3454 0.4697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3761 REMARK 3 ANGLE : 0.723 5080 REMARK 3 CHIRALITY : 0.025 533 REMARK 3 PLANARITY : 0.003 649 REMARK 3 DIHEDRAL : 14.270 1437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8736 25.9157 -6.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.4366 T22: 0.7922 REMARK 3 T33: 0.4253 T12: -0.0273 REMARK 3 T13: 0.0319 T23: 0.1169 REMARK 3 L TENSOR REMARK 3 L11: 6.3720 L22: 6.5932 REMARK 3 L33: 5.4273 L12: -1.8899 REMARK 3 L13: 0.8487 L23: 1.5411 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.8259 S13: 0.5732 REMARK 3 S21: -0.5230 S22: -0.0514 S23: -0.4068 REMARK 3 S31: -0.5965 S32: 0.3600 S33: -0.0572 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 40:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1129 29.2595 11.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.3982 T22: 0.5625 REMARK 3 T33: 0.5462 T12: 0.0428 REMARK 3 T13: 0.0571 T23: -0.2006 REMARK 3 L TENSOR REMARK 3 L11: 2.5402 L22: 8.1173 REMARK 3 L33: 6.1948 L12: 2.2095 REMARK 3 L13: -0.0459 L23: -1.2065 REMARK 3 S TENSOR REMARK 3 S11: 0.5088 S12: -0.2240 S13: 0.4907 REMARK 3 S21: 0.1152 S22: 0.1875 S23: -0.8905 REMARK 3 S31: 0.2993 S32: 0.6277 S33: -0.6540 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 68:101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2874 26.9512 26.7869 REMARK 3 T TENSOR REMARK 3 T11: 0.7349 T22: 0.7941 REMARK 3 T33: 0.4763 T12: 0.0576 REMARK 3 T13: -0.0665 T23: -0.2367 REMARK 3 L TENSOR REMARK 3 L11: 4.4591 L22: 5.2960 REMARK 3 L33: 6.8833 L12: 1.8211 REMARK 3 L13: -2.9929 L23: -3.6680 REMARK 3 S TENSOR REMARK 3 S11: 0.6393 S12: -0.8662 S13: 0.5374 REMARK 3 S21: 0.8292 S22: -0.3272 S23: -0.0588 REMARK 3 S31: -0.0928 S32: 1.3152 S33: -0.2940 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 102:179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6806 21.6636 -5.8293 REMARK 3 T TENSOR REMARK 3 T11: 0.4159 T22: 0.9114 REMARK 3 T33: 0.3748 T12: 0.0025 REMARK 3 T13: -0.0120 T23: 0.0924 REMARK 3 L TENSOR REMARK 3 L11: 1.7720 L22: 3.9825 REMARK 3 L33: 3.5904 L12: 0.3175 REMARK 3 L13: -0.7382 L23: 0.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: 0.8593 S13: 0.2056 REMARK 3 S21: -0.3775 S22: 0.0181 S23: -0.0144 REMARK 3 S31: -0.3452 S32: -0.3811 S33: -0.1030 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 180:253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8148 24.4015 26.2313 REMARK 3 T TENSOR REMARK 3 T11: 0.6075 T22: 0.7972 REMARK 3 T33: 0.3549 T12: 0.2078 REMARK 3 T13: -0.0189 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 3.6191 L22: 6.4222 REMARK 3 L33: 2.3178 L12: 1.2967 REMARK 3 L13: -0.3433 L23: 0.3046 REMARK 3 S TENSOR REMARK 3 S11: -0.1870 S12: -0.6628 S13: 0.5164 REMARK 3 S21: 0.9728 S22: 0.2399 S23: 0.3308 REMARK 3 S31: -0.2216 S32: -0.0966 S33: -0.0173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 254:310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7401 18.9933 11.7361 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.7702 REMARK 3 T33: 0.2985 T12: 0.0160 REMARK 3 T13: -0.0447 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.2784 L22: 0.8810 REMARK 3 L33: 1.4026 L12: -0.0241 REMARK 3 L13: 0.7670 L23: 0.2565 REMARK 3 S TENSOR REMARK 3 S11: -0.2630 S12: 0.0107 S13: 0.0706 REMARK 3 S21: 0.1872 S22: 0.1669 S23: 0.0245 REMARK 3 S31: 0.0019 S32: -0.2334 S33: 0.0414 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 311:367 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1018 9.6156 11.6192 REMARK 3 T TENSOR REMARK 3 T11: 0.4901 T22: 0.7788 REMARK 3 T33: 0.2932 T12: 0.0428 REMARK 3 T13: -0.0357 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.7158 L22: 0.8385 REMARK 3 L33: 6.4416 L12: 0.4613 REMARK 3 L13: -0.8028 L23: -0.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.2507 S12: -0.3144 S13: -0.1450 REMARK 3 S21: 0.2079 S22: 0.0708 S23: -0.2345 REMARK 3 S31: 0.2917 S32: 0.0221 S33: 0.0830 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 368:383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7196 11.9460 31.9019 REMARK 3 T TENSOR REMARK 3 T11: 0.8481 T22: 1.2824 REMARK 3 T33: 0.6176 T12: -0.3645 REMARK 3 T13: -0.0317 T23: 0.1109 REMARK 3 L TENSOR REMARK 3 L11: 3.4606 L22: 7.9589 REMARK 3 L33: 7.0476 L12: -2.8733 REMARK 3 L13: 1.4336 L23: 2.0057 REMARK 3 S TENSOR REMARK 3 S11: -1.2098 S12: 0.4559 S13: 0.3223 REMARK 3 S21: -0.4209 S22: 1.1772 S23: -1.3239 REMARK 3 S31: 0.3912 S32: -0.2165 S33: 0.0163 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 384:405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3560 1.1519 35.2795 REMARK 3 T TENSOR REMARK 3 T11: 0.5940 T22: 1.4593 REMARK 3 T33: 0.6065 T12: -0.0595 REMARK 3 T13: -0.1457 T23: 0.3045 REMARK 3 L TENSOR REMARK 3 L11: 3.0784 L22: 3.4233 REMARK 3 L33: 1.3737 L12: 0.3409 REMARK 3 L13: 1.9417 L23: -0.5609 REMARK 3 S TENSOR REMARK 3 S11: 1.2077 S12: -0.6966 S13: -0.6992 REMARK 3 S21: 0.3595 S22: -0.7239 S23: -0.3950 REMARK 3 S31: 0.5139 S32: 1.3813 S33: -0.5321 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 406:452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1453 -2.3360 15.1918 REMARK 3 T TENSOR REMARK 3 T11: 0.5126 T22: 0.4993 REMARK 3 T33: 0.3855 T12: -0.0248 REMARK 3 T13: 0.0006 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.8557 L22: 3.7507 REMARK 3 L33: 7.5407 L12: -0.1644 REMARK 3 L13: -3.8638 L23: 1.0602 REMARK 3 S TENSOR REMARK 3 S11: -0.3729 S12: -0.4854 S13: -0.8672 REMARK 3 S21: 0.0744 S22: -0.0491 S23: -0.0273 REMARK 3 S31: 1.4252 S32: 0.1842 S33: 0.4283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV_1525 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.5, 10% PEG 3350 AND REMARK 280 0.2 M L-PROLINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.08450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.99400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.08450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.96050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.99400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 207 105.86 -171.04 REMARK 500 SER A 211 66.99 -165.93 REMARK 500 ALA A 253 77.99 -153.09 REMARK 500 LYS A 260 48.68 -103.60 REMARK 500 ASN A 281 104.90 -55.10 REMARK 500 TYR A 340 -26.19 -153.69 REMARK 500 ASN A 425 41.81 -96.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GRG A 502 REMARK 610 GRG A 503 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GRG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GRG A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OPC RELATED DB: PDB REMARK 900 SAGGR BOUND TO PG REMARK 900 RELATED ID: 4OPD RELATED DB: PDB REMARK 900 SAGGR BOUND TO GGPP REMARK 900 RELATED ID: 4OPG RELATED DB: PDB REMARK 900 SAGGR L377H REMARK 900 RELATED ID: 4OPI RELATED DB: PDB REMARK 900 SAGGR F219L REMARK 900 RELATED ID: 4OPL RELATED DB: PDB REMARK 900 SAGGR I206F REMARK 900 RELATED ID: 4OPT RELATED DB: PDB REMARK 900 SAGGR I206F/L377H DBREF 4OPU A 1 452 UNP Q4JA33 Q4JA33_SULAC 1 452 SEQADV 4OPU HIS A 0 UNP Q4JA33 EXPRESSION TAG SEQADV 4OPU HIS A 91 UNP Q4JA33 GLY 91 ENGINEERED MUTATION SEQRES 1 A 453 HIS MET LYS GLU LEU LYS TYR ASP VAL LEU ILE ILE GLY SEQRES 2 A 453 GLY GLY PHE ALA GLY SER SER ALA ALA TYR GLN LEU SER SEQRES 3 A 453 ARG ARG GLY LEU LYS ILE LEU LEU VAL ASP SER LYS PRO SEQRES 4 A 453 TRP ASN ARG ILE GLY ASP LYS PRO CYS GLY ASP ALA VAL SEQRES 5 A 453 SER LYS ALA HIS PHE ASP LYS LEU GLY MET PRO TYR PRO SEQRES 6 A 453 LYS GLY GLU GLU LEU GLU ASN LYS ILE ASN GLY ILE LYS SEQRES 7 A 453 LEU TYR SER PRO ASP MET GLN THR VAL TRP THR VAL ASN SEQRES 8 A 453 HIS GLU GLY PHE GLU LEU ASN ALA PRO LEU TYR ASN GLN SEQRES 9 A 453 ARG VAL LEU LYS GLU ALA GLN ASP ARG GLY VAL GLU ILE SEQRES 10 A 453 TRP ASP LEU THR THR ALA MET LYS PRO ILE PHE GLU ASP SEQRES 11 A 453 GLY TYR VAL LYS GLY ALA VAL LEU PHE ASN ARG ARG THR SEQRES 12 A 453 ASN GLU GLU LEU THR VAL TYR SER LYS VAL VAL VAL GLU SEQRES 13 A 453 ALA THR GLY TYR SER ARG SER PHE ARG SER LYS LEU PRO SEQRES 14 A 453 PRO GLU LEU PRO ILE THR GLU ASP LEU ASP ASP LYS ASP SEQRES 15 A 453 ALA ASP VAL ALA TYR ARG GLU VAL LEU LEU THR LYS GLU SEQRES 16 A 453 ASP ILE GLU ASP HIS ASP TYR LEU ARG ILE PHE ILE ASP SEQRES 17 A 453 GLN GLU THR SER PRO GLY GLY TYR TRP TRP TYR PHE PRO SEQRES 18 A 453 LYS GLY LYS ASN LYS VAL ASN VAL GLY LEU GLY ILE GLN SEQRES 19 A 453 GLY GLY MET GLY TYR PRO SER ILE HIS GLU TYR TYR LYS SEQRES 20 A 453 LYS TYR LEU ASP LYS TYR ALA PRO ASP VAL ASP LYS SER SEQRES 21 A 453 LYS LEU LEU VAL LYS GLY GLY ALA LEU VAL PRO THR ARG SEQRES 22 A 453 ARG PRO LEU TYR THR MET ALA TRP ASN GLY ILE ILE VAL SEQRES 23 A 453 ILE GLY ASP SER GLY PHE THR VAL ASN PRO VAL HIS GLY SEQRES 24 A 453 GLY GLY LYS GLY SER ALA MET ILE SER GLY TYR CYS ALA SEQRES 25 A 453 ALA LYS ALA ILE LEU SER ALA PHE GLU THR GLY ASP PHE SEQRES 26 A 453 SER ALA SER GLY LEU TRP ASP MET ASN ILE CYS TYR VAL SEQRES 27 A 453 ASN GLU TYR GLY ALA LYS GLN ALA SER LEU ASP ILE PHE SEQRES 28 A 453 ARG ARG PHE LEU GLN LYS LEU SER ASN ASP ASP ILE ASN SEQRES 29 A 453 TYR GLY MET LYS LYS LYS ILE ILE LYS GLU GLU ASP LEU SEQRES 30 A 453 LEU GLU ALA SER GLU LYS GLY ASP LEU HIS LEU SER VAL SEQRES 31 A 453 ALA ASP LYS ALA MET ARG VAL ILE SER GLY LEU GLY ARG SEQRES 32 A 453 PRO SER LEU LEU PHE LYS LEU LYS ALA VAL ALA GLU SER SEQRES 33 A 453 MET LYS LYS ILE LYS GLU LEU TYR LEU ASN TYR PRO ARG SEQRES 34 A 453 SER PRO SER SER LEU GLY SER TRP ARG ARG GLU VAL ASP SEQRES 35 A 453 ASN VAL LEU THR GLU PHE ASN LYS SER LEU SER HET FDA A 501 53 HET GRG A 502 25 HET GRG A 503 25 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM GRG GERANYLGERANYL DIPHOSPHATE FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 GRG 2(C20 H36 O7 P2) FORMUL 5 HOH *6(H2 O) HELIX 1 1 GLY A 14 SER A 25 1 12 HELIX 2 2 PRO A 38 ILE A 42 5 5 HELIX 3 3 LYS A 53 GLY A 60 1 8 HELIX 4 4 LYS A 65 GLU A 67 5 3 HELIX 5 5 ASN A 97 ARG A 112 1 16 HELIX 6 6 THR A 157 ARG A 161 5 5 HELIX 7 7 PHE A 163 LEU A 167 5 5 HELIX 8 8 LEU A 171 GLU A 175 5 5 HELIX 9 9 ASP A 178 LYS A 180 5 3 HELIX 10 10 SER A 240 ALA A 253 1 14 HELIX 11 11 GLY A 287 PHE A 291 5 5 HELIX 12 12 GLY A 300 THR A 321 1 22 HELIX 13 13 SER A 325 TRP A 330 1 6 HELIX 14 14 TRP A 330 TYR A 340 1 11 HELIX 15 15 TYR A 340 GLN A 355 1 16 HELIX 16 16 SER A 358 LYS A 368 1 11 HELIX 17 17 GLU A 374 ALA A 379 1 6 HELIX 18 18 HIS A 386 ARG A 395 1 10 HELIX 19 19 VAL A 396 LEU A 400 5 5 HELIX 20 20 SER A 404 PHE A 407 5 4 HELIX 21 21 LYS A 408 ASN A 425 1 18 HELIX 22 22 SER A 429 SER A 431 5 3 HELIX 23 23 SER A 432 LEU A 451 1 20 SHEET 1 A 4 LYS A 2 LYS A 5 0 SHEET 2 A 4 GLU A 144 TYR A 149 1 O TYR A 149 N LEU A 4 SHEET 3 A 4 TYR A 131 ASN A 139 -1 N LEU A 137 O LEU A 146 SHEET 4 A 4 THR A 120 GLU A 128 -1 N MET A 123 O VAL A 136 SHEET 1 B 6 GLU A 115 ASP A 118 0 SHEET 2 B 6 ILE A 31 ASP A 35 1 N LEU A 33 O GLU A 115 SHEET 3 B 6 VAL A 8 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 B 6 VAL A 152 GLU A 155 1 O VAL A 154 N ILE A 11 SHEET 5 B 6 ILE A 283 VAL A 285 1 O ILE A 284 N GLU A 155 SHEET 6 B 6 ALA A 279 TRP A 280 -1 N TRP A 280 O ILE A 283 SHEET 1 C 8 ALA A 50 SER A 52 0 SHEET 2 C 8 VAL A 86 LEU A 96 -1 O PHE A 94 N VAL A 51 SHEET 3 C 8 LEU A 69 TYR A 79 -1 N ILE A 76 O VAL A 89 SHEET 4 C 8 TYR A 201 PHE A 205 1 O LEU A 202 N LYS A 77 SHEET 5 C 8 TYR A 215 PRO A 220 -1 O TYR A 218 N ARG A 203 SHEET 6 C 8 LYS A 225 GLN A 233 -1 O ASN A 227 N PHE A 219 SHEET 7 C 8 ALA A 182 THR A 192 -1 N GLU A 188 O VAL A 228 SHEET 8 C 8 VAL A 256 VAL A 263 -1 O ASP A 257 N LEU A 191 SHEET 1 D 8 ALA A 50 SER A 52 0 SHEET 2 D 8 VAL A 86 LEU A 96 -1 O PHE A 94 N VAL A 51 SHEET 3 D 8 LEU A 69 TYR A 79 -1 N ILE A 76 O VAL A 89 SHEET 4 D 8 TYR A 201 PHE A 205 1 O LEU A 202 N LYS A 77 SHEET 5 D 8 TYR A 215 PRO A 220 -1 O TYR A 218 N ARG A 203 SHEET 6 D 8 LYS A 225 GLN A 233 -1 O ASN A 227 N PHE A 219 SHEET 7 D 8 ALA A 182 THR A 192 -1 N GLU A 188 O VAL A 228 SHEET 8 D 8 GLY A 266 PRO A 270 -1 O VAL A 269 N ASP A 183 SSBOND 1 CYS A 310 CYS A 335 1555 1555 2.04 SITE 1 AC1 29 GLY A 12 GLY A 14 PHE A 15 ALA A 16 SITE 2 AC1 29 ASP A 35 SER A 36 LYS A 37 LYS A 45 SITE 3 AC1 29 PRO A 46 CYS A 47 GLY A 48 ASP A 49 SITE 4 AC1 29 ALA A 50 THR A 120 THR A 121 ALA A 122 SITE 5 AC1 29 ALA A 156 THR A 157 GLY A 158 SER A 162 SITE 6 AC1 29 ALA A 185 ALA A 267 GLY A 287 ASP A 288 SITE 7 AC1 29 VAL A 293 GLY A 299 GLY A 300 LYS A 301 SITE 8 AC1 29 GRG A 502 SITE 1 AC2 17 ALA A 50 SER A 52 ILE A 76 HIS A 91 SITE 2 AC2 17 ASP A 183 GLY A 213 TYR A 215 TRP A 217 SITE 3 AC2 17 PHE A 219 GLY A 231 PRO A 295 VAL A 296 SITE 4 AC2 17 HIS A 297 GLY A 298 GLN A 355 FDA A 501 SITE 5 AC2 17 GRG A 503 SITE 1 AC3 14 SER A 52 HIS A 55 ILE A 76 HIS A 91 SITE 2 AC3 14 ILE A 204 ILE A 206 TYR A 215 ASN A 294 SITE 3 AC3 14 VAL A 296 HIS A 297 TYR A 340 LYS A 343 SITE 4 AC3 14 SER A 380 GRG A 502 CRYST1 63.921 81.988 106.169 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009419 0.00000