HEADER OXIDOREDUCTASE 10-FEB-14 4OQS TITLE CRYSTAL STRUCTURE OF CYP105AS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYP105AS1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS REVDAT 3 20-SEP-23 4OQS 1 REMARK REVDAT 2 01-APR-15 4OQS 1 JRNL REVDAT 1 18-FEB-15 4OQS 0 JRNL AUTH K.J.MCLEAN,M.HANS,B.MEIJRINK,W.B.VAN SCHEPPINGEN, JRNL AUTH 2 A.VOLLEBREGT,K.L.TEE,J.M.VAN DER LAAN,D.LEYS,A.W.MUNRO, JRNL AUTH 3 M.A.VAN DEN BERG JRNL TITL SINGLE-STEP FERMENTATIVE PRODUCTION OF THE JRNL TITL 2 CHOLESTEROL-LOWERING DRUG PRAVASTATIN VIA REPROGRAMMING OF JRNL TITL 3 PENICILLIUM CHRYSOGENUM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 2847 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 25691737 JRNL DOI 10.1073/PNAS.1419028112 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3107 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2102 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4249 ; 1.908 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5126 ; 1.069 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 6.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.788 ;23.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;15.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3415 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 1.155 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 758 ; 0.328 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3126 ; 2.049 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 3.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 4.683 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 29.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZBY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M SODIUM ACETATE, 0.1 M TRIS 10% REMARK 280 PEG 8000 (W/V) + 10% PEG 1000 (W/V), PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.64783 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.34000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 66.94000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 38.64783 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.34000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 66.94000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 38.64783 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.34000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.29565 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.68000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 77.29565 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.68000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 77.29565 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 MET A 8 REMARK 465 ASN A 9 REMARK 465 VAL A 78 REMARK 465 ILE A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 PRO A 82 REMARK 465 GLY A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 401 REMARK 465 ARG A 402 REMARK 465 PRO A 403 REMARK 465 SER A 404 REMARK 465 PHE A 405 REMARK 465 LEU A 406 REMARK 465 VAL A 407 REMARK 465 GLN A 408 REMARK 465 SER A 409 REMARK 465 GLY A 410 REMARK 465 TYR A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 GLN A 414 REMARK 465 LYS A 415 REMARK 465 LEU A 416 REMARK 465 ILE A 417 REMARK 465 SER A 418 REMARK 465 GLU A 419 REMARK 465 GLU A 420 REMARK 465 ASP A 421 REMARK 465 LEU A 422 REMARK 465 ASN A 423 REMARK 465 SER A 424 REMARK 465 ALA A 425 REMARK 465 VAL A 426 REMARK 465 ASP A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 790 O HOH A 796 1.87 REMARK 500 NH1 ARG A 124 OE1 GLN A 127 1.98 REMARK 500 N GLU A 10 O HOH A 737 1.99 REMARK 500 O HOH A 788 O HOH A 790 2.08 REMARK 500 O HOH A 631 O HOH A 719 2.09 REMARK 500 O HOH A 644 O HOH A 685 2.10 REMARK 500 CG2 ILE A 110 O HOH A 754 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 202 CG GLU A 202 CD 0.094 REMARK 500 GLN A 351 CB GLN A 351 CG -0.166 REMARK 500 ALA A 394 CA ALA A 394 CB 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 86 169.80 104.12 REMARK 500 LYS A 87 110.40 69.81 REMARK 500 ASN A 96 31.27 -99.85 REMARK 500 PHE A 149 -52.46 -147.48 REMARK 500 LYS A 212 -154.43 -108.17 REMARK 500 GLU A 298 52.75 36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 85 THR A 86 -146.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 348 SG REMARK 620 2 HEM A 501 NA 96.5 REMARK 620 3 HEM A 501 NB 86.8 87.6 REMARK 620 4 HEM A 501 NC 89.9 173.2 90.7 REMARK 620 5 HEM A 501 ND 98.7 90.6 174.4 90.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQR RELATED DB: PDB REMARK 900 MUTANT PROTEIN WITH COMPACTIN BOUND DBREF 4OQS A 1 433 PDB 4OQS 4OQS 1 433 SEQRES 1 A 433 MET ARG VAL ASP SER GLU ASN MET ASN GLU PRO VAL THR SEQRES 2 A 433 LEU PRO THR GLY ARG ALA VAL GLY TYR PRO PHE ASP PRO SEQRES 3 A 433 PRO PRO ASP LEU VAL LYS LEU PRO PRO VAL SER PRO MET SEQRES 4 A 433 ARG PHE PRO ASP GLY HIS ILE GLY TRP LEU VAL THR SER SEQRES 5 A 433 HIS ALA ALA ALA ARG THR VAL MET ILE ASP PRO ARG PHE SEQRES 6 A 433 SER ASN ARG PRO GLU HIS LYS HIS PRO VAL PHE SER VAL SEQRES 7 A 433 ILE PRO ARG PRO GLY GLY ALA THR LYS ALA PRO ALA PRO SEQRES 8 A 433 GLY TRP PHE ILE ASN MET ASP ALA PRO GLU HIS THR ARG SEQRES 9 A 433 TYR ARG ARG MET LEU ILE SER GLN PHE THR VAL ARG ARG SEQRES 10 A 433 ILE LYS GLU LEU GLU PRO ARG ILE VAL GLN ILE THR GLU SEQRES 11 A 433 ASP HIS LEU ASP ALA MET ALA LYS ALA GLY PRO PRO VAL SEQRES 12 A 433 ASP LEU VAL GLN ALA PHE ALA LEU PRO VAL PRO SER LEU SEQRES 13 A 433 VAL ILE CYS GLU LEU LEU GLY VAL SER TYR ALA ASP HIS SEQRES 14 A 433 ALA PHE PHE GLN GLU GLN THR THR ILE MET ALA SER VAL SEQRES 15 A 433 ASP LYS THR GLN ASP GLU VAL THR THR ALA LEU GLY LYS SEQRES 16 A 433 LEU THR ARG TYR ILE ALA GLU LEU VAL ALA THR LYS ARG SEQRES 17 A 433 LEU SER PRO LYS ASP ASP LEU LEU GLY SER LEU ILE THR SEQRES 18 A 433 ASP THR ASP LEU THR ASP GLU GLU LEU THR ASN ILE ALA SEQRES 19 A 433 LEU LEU LEU LEU VAL ALA GLY HIS GLU THR THR ALA ASN SEQRES 20 A 433 MET LEU GLY LEU GLY THR PHE ALA LEU LEU GLN HIS PRO SEQRES 21 A 433 GLU GLN ILE ALA ALA LEU ASP SER PRO ASP ALA VAL GLU SEQRES 22 A 433 GLU LEU LEU ARG TYR LEU SER ILE VAL HIS LEU GLY THR SEQRES 23 A 433 PRO ASN ARG ALA ALA LEU GLU ASP VAL GLU LEU GLU GLY SEQRES 24 A 433 GLN MET ILE ARG LYS GLY ASP THR VAL ALA ILE GLY LEU SEQRES 25 A 433 PRO ALA VAL ASN ARG ASP PRO LYS VAL PHE ASP GLU PRO SEQRES 26 A 433 ASP ILE LEU GLN LEU ASP ARG VAL ASP ALA ARG LYS HIS SEQRES 27 A 433 ALA ALA PHE GLY GLY GLY ILE HIS GLN CYS LEU GLY GLN SEQRES 28 A 433 GLN LEU ALA ARG VAL GLU MET ARG ILE GLY PHE THR ARG SEQRES 29 A 433 LEU PHE ALA ARG PHE PRO SER LEU ARG LEU ALA VAL PRO SEQRES 30 A 433 ALA GLU GLU ILE LYS LEU ARG GLU LYS SER ALA ALA TYR SEQRES 31 A 433 GLY VAL TRP ALA LEU PRO VAL ALA TRP ASP ALA ARG PRO SEQRES 32 A 433 SER PHE LEU VAL GLN SER GLY TYR VAL GLU GLN LYS LEU SEQRES 33 A 433 ILE SER GLU GLU ASP LEU ASN SER ALA VAL ASP HIS HIS SEQRES 34 A 433 HIS HIS HIS HIS HET HEM A 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *203(H2 O) HELIX 1 1 PRO A 27 LYS A 32 1 6 HELIX 2 2 SER A 52 ASP A 62 1 11 HELIX 3 3 TRP A 93 MET A 97 5 5 HELIX 4 4 PRO A 100 ILE A 110 1 11 HELIX 5 5 SER A 111 PHE A 113 5 3 HELIX 6 6 THR A 114 GLU A 120 1 7 HELIX 7 7 LEU A 121 GLY A 140 1 20 HELIX 8 8 LEU A 145 PHE A 149 1 5 HELIX 9 9 LEU A 151 GLY A 163 1 13 HELIX 10 10 SER A 165 ALA A 167 5 3 HELIX 11 11 ASP A 168 SER A 181 1 14 HELIX 12 12 THR A 185 SER A 210 1 26 HELIX 13 13 ASP A 214 THR A 223 1 10 HELIX 14 14 THR A 226 HIS A 259 1 34 HELIX 15 15 PRO A 260 LEU A 266 5 7 HELIX 16 16 ASP A 270 SER A 280 1 11 HELIX 17 17 GLY A 311 ASN A 316 1 6 HELIX 18 18 ASP A 334 HIS A 338 5 5 HELIX 19 19 GLY A 343 GLN A 347 5 5 HELIX 20 20 GLY A 350 PHE A 369 1 20 HELIX 21 21 PRO A 377 ILE A 381 5 5 SHEET 1 A 5 VAL A 36 ARG A 40 0 SHEET 2 A 5 ILE A 46 VAL A 50 -1 O GLY A 47 N MET A 39 SHEET 3 A 5 THR A 307 ILE A 310 1 O ALA A 309 N VAL A 50 SHEET 4 A 5 ASN A 288 ALA A 291 -1 N ARG A 289 O VAL A 308 SHEET 5 A 5 PHE A 65 SER A 66 -1 N SER A 66 O ALA A 290 SHEET 1 B 3 VAL A 143 ASP A 144 0 SHEET 2 B 3 PRO A 396 ALA A 398 -1 O VAL A 397 N VAL A 143 SHEET 3 B 3 ARG A 373 LEU A 374 -1 N ARG A 373 O ALA A 398 SHEET 1 C 2 VAL A 295 LEU A 297 0 SHEET 2 C 2 GLN A 300 ILE A 302 -1 O GLN A 300 N LEU A 297 LINK SG CYS A 348 FE HEM A 501 1555 1555 2.32 CISPEP 1 ALA A 99 PRO A 100 0 11.28 CISPEP 2 PRO A 141 PRO A 142 0 -11.72 CISPEP 3 THR A 286 PRO A 287 0 0.01 SITE 1 AC1 21 PHE A 94 ILE A 95 HIS A 102 ARG A 106 SITE 2 AC1 21 ALA A 240 GLY A 241 THR A 244 THR A 245 SITE 3 AC1 21 LEU A 276 PRO A 287 ARG A 289 ALA A 340 SITE 4 AC1 21 PHE A 341 GLY A 342 ILE A 345 HIS A 346 SITE 5 AC1 21 CYS A 348 GLY A 350 LEU A 353 GLU A 357 SITE 6 AC1 21 HOH A 611 CRYST1 133.880 133.880 73.020 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007469 0.004312 0.000000 0.00000 SCALE2 0.000000 0.008625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013695 0.00000