HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 11-FEB-14 4ORI TITLE RAT DIHYDROOROTATE DEHYDROGENASE BOUND WITH DSM338 (N-[3,5-DIFLUORO-4- TITLE 2 (TRIFLUOROMETHYL)PHENYL]-5-METHYL-2-(TRIFLUOROMETHYL)[1,2, TITLE 3 4]TRIAZOLO[1,5-A]PYRIMIDIN-7-AMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-395; COMPND 5 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DHODH, DIHYDROOROTATE DEHYDROGENASE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ALPHA/BETA BARREL, OXIDOREDUCTASE, FMN, MITOCHONDRIAL MEMBRANE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.A.PHILLIPS REVDAT 3 20-SEP-23 4ORI 1 REMARK SEQADV REVDAT 2 09-JUL-14 4ORI 1 JRNL REVDAT 1 04-JUN-14 4ORI 0 JRNL AUTH X.DENG,S.KOKKONDA,F.EL MAZOUNI,J.WHITE,J.N.BURROWS, JRNL AUTH 2 W.KAMINSKY,S.A.CHARMAN,D.MATTHEWS,P.K.RATHOD,M.A.PHILLIPS JRNL TITL FLUORINE MODULATES SPECIES SELECTIVITY IN THE JRNL TITL 2 TRIAZOLOPYRIMIDINE CLASS OF PLASMODIUM FALCIPARUM JRNL TITL 3 DIHYDROOROTATE DEHYDROGENASE INHIBITORS. JRNL REF J.MED.CHEM. V. 57 5381 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24801997 JRNL DOI 10.1021/JM500481T REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 53464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2841 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3861 ; 2.166 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 7.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;41.311 ;23.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;16.420 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2146 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2839 ;11.222 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 47 ;31.958 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2866 ;16.394 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6804 -30.4830 11.7168 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.3879 REMARK 3 T33: 0.3713 T12: 0.1344 REMARK 3 T13: 0.1491 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 3.9730 L22: 21.6437 REMARK 3 L33: 17.5043 L12: 8.2126 REMARK 3 L13: 0.7234 L23: -7.5075 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: 0.0125 S13: -0.5110 REMARK 3 S21: -0.0223 S22: -0.8119 S23: -1.4679 REMARK 3 S31: 0.7459 S32: 1.5415 S33: 0.6599 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6285 -23.5610 3.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1665 REMARK 3 T33: 0.0735 T12: 0.0295 REMARK 3 T13: 0.0317 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 5.9016 L22: 4.2369 REMARK 3 L33: 4.4404 L12: 3.1370 REMARK 3 L13: -0.3339 L23: -0.2865 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: 0.0304 S13: -0.1145 REMARK 3 S21: -0.0451 S22: -0.1908 S23: 0.0781 REMARK 3 S31: -0.1784 S32: 0.1660 S33: 0.1118 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7194 -36.1279 19.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.1599 REMARK 3 T33: 0.1695 T12: -0.0934 REMARK 3 T13: -0.0167 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.7150 L22: 1.6529 REMARK 3 L33: 3.1482 L12: -0.4855 REMARK 3 L13: -0.7318 L23: -0.4994 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.1265 S13: -0.4695 REMARK 3 S21: -0.0994 S22: -0.0810 S23: 0.1439 REMARK 3 S31: 0.7215 S32: -0.4309 S33: 0.0563 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3616 -19.9075 8.4701 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0923 REMARK 3 T33: 0.0771 T12: 0.0278 REMARK 3 T13: -0.0228 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.4984 L22: 1.0688 REMARK 3 L33: 3.1803 L12: 0.0434 REMARK 3 L13: 1.2171 L23: -0.3894 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: 0.1967 S13: 0.0967 REMARK 3 S21: -0.1341 S22: -0.0876 S23: -0.0075 REMARK 3 S31: -0.2555 S32: 0.0244 S33: 0.1717 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2036 -21.1992 5.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.0873 T22: 0.1002 REMARK 3 T33: 0.0757 T12: 0.0520 REMARK 3 T13: -0.0351 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.8225 L22: 1.4293 REMARK 3 L33: 2.9601 L12: 0.4673 REMARK 3 L13: 1.0012 L23: -0.2856 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.1808 S13: 0.0922 REMARK 3 S21: -0.2196 S22: -0.0437 S23: 0.0774 REMARK 3 S31: -0.1315 S32: -0.1622 S33: 0.0991 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8224 -11.7764 11.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.2134 REMARK 3 T33: 0.1657 T12: 0.0839 REMARK 3 T13: -0.0638 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.3217 L22: 1.6368 REMARK 3 L33: 1.6032 L12: -0.0590 REMARK 3 L13: 0.7157 L23: -0.4167 REMARK 3 S TENSOR REMARK 3 S11: -0.1261 S12: -0.1212 S13: 0.3352 REMARK 3 S21: 0.0112 S22: 0.0136 S23: 0.0152 REMARK 3 S31: -0.3764 S32: -0.3630 S33: 0.1125 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2304 -14.1017 15.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.4177 REMARK 3 T33: 0.1620 T12: 0.1543 REMARK 3 T13: -0.0368 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 6.3516 L22: 2.2732 REMARK 3 L33: 1.5361 L12: 0.3218 REMARK 3 L13: 2.0936 L23: -0.8260 REMARK 3 S TENSOR REMARK 3 S11: -0.2157 S12: -0.1599 S13: 0.0761 REMARK 3 S21: -0.0546 S22: 0.1968 S23: 0.3253 REMARK 3 S31: -0.2311 S32: -0.5620 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5712 -7.0076 29.0613 REMARK 3 T TENSOR REMARK 3 T11: 0.4829 T22: 0.2737 REMARK 3 T33: 0.2943 T12: 0.2224 REMARK 3 T13: 0.1136 T23: -0.1116 REMARK 3 L TENSOR REMARK 3 L11: 34.4101 L22: 9.5482 REMARK 3 L33: 7.2797 L12: 14.0686 REMARK 3 L13: 9.4673 L23: 5.8038 REMARK 3 S TENSOR REMARK 3 S11: -0.2821 S12: -0.1918 S13: -0.2171 REMARK 3 S21: 0.0373 S22: 0.0316 S23: 0.2559 REMARK 3 S31: -0.6542 S32: -0.3130 S33: 0.2504 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0172 -21.5365 25.6148 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1003 REMARK 3 T33: 0.0626 T12: 0.0128 REMARK 3 T13: -0.0154 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.3873 L22: 1.4192 REMARK 3 L33: 2.9427 L12: 0.0690 REMARK 3 L13: 0.8845 L23: -0.3230 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.2120 S13: 0.0866 REMARK 3 S21: 0.1016 S22: -0.0766 S23: 0.0042 REMARK 3 S31: -0.1260 S32: -0.2103 S33: 0.1397 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 391 A 396 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2626 -23.6544 40.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.3479 T22: 0.6714 REMARK 3 T33: 0.2118 T12: -0.0389 REMARK 3 T13: 0.0646 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 20.7821 L22: 10.1638 REMARK 3 L33: 21.1406 L12: 5.3326 REMARK 3 L13: 0.0036 L23: 12.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: -1.2126 S13: -0.2112 REMARK 3 S21: 0.7094 S22: -0.4582 S23: -0.1481 REMARK 3 S31: 0.8889 S32: -0.7326 S33: 0.2172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ORI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.550 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1UUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.64 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.2, 1.2 M NACL, AND 10 MM DTT, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.18250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.18250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 ASP A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 465 ARG A 222 REMARK 465 SER A 223 REMARK 465 LEU A 224 REMARK 465 LEU A 397 REMARK 465 GLU A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 152 NE2 HIS A 152 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 132 C - N - CD ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 41 -73.01 -97.87 REMARK 500 SER A 337 13.29 -142.35 REMARK 500 TYR A 356 -56.63 -136.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 244 LYS A 245 -116.77 REMARK 500 GLY A 246 THR A 247 149.54 REMARK 500 ARG A 248 LYS A 249 -117.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2V6 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQV RELATED DB: PDB REMARK 900 RELATED ID: 4ORM RELATED DB: PDB DBREF 4ORI A 33 396 UNP Q63707 PYRD_RAT 32 395 SEQADV 4ORI LEU A 397 UNP Q63707 EXPRESSION TAG SEQADV 4ORI GLU A 398 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 399 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 400 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 401 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 402 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 403 UNP Q63707 EXPRESSION TAG SEQADV 4ORI HIS A 404 UNP Q63707 EXPRESSION TAG SEQRES 1 A 372 GLY ASP ASP HIS PHE TYR ALA GLU TYR LEU MET PRO GLY SEQRES 2 A 372 LEU GLN ARG LEU LEU ASP PRO GLU SER ALA HIS ARG LEU SEQRES 3 A 372 ALA VAL ARG VAL THR SER LEU GLY LEU LEU PRO ARG ALA SEQRES 4 A 372 THR PHE GLN ASP SER ASP MET LEU GLU VAL LYS VAL LEU SEQRES 5 A 372 GLY HIS LYS PHE ARG ASN PRO VAL GLY ILE ALA ALA GLY SEQRES 6 A 372 PHE ASP LYS ASN GLY GLU ALA VAL ASP GLY LEU TYR LYS SEQRES 7 A 372 LEU GLY PHE GLY PHE VAL GLU VAL GLY SER VAL THR PRO SEQRES 8 A 372 GLN PRO GLN GLU GLY ASN PRO ARG PRO ARG VAL PHE ARG SEQRES 9 A 372 LEU PRO GLU ASP GLN ALA VAL ILE ASN ARG TYR GLY PHE SEQRES 10 A 372 ASN SER HIS GLY LEU SER VAL VAL GLU HIS ARG LEU ARG SEQRES 11 A 372 ALA ARG GLN GLN LYS GLN ALA GLN LEU THR ALA ASP GLY SEQRES 12 A 372 LEU PRO LEU GLY ILE ASN LEU GLY LYS ASN LYS THR SER SEQRES 13 A 372 GLU ASP ALA ALA ALA ASP TYR ALA GLU GLY VAL ARG THR SEQRES 14 A 372 LEU GLY PRO LEU ALA ASP TYR LEU VAL VAL ASN VAL SER SEQRES 15 A 372 SER PRO ASN THR ALA GLY LEU ARG SER LEU GLN GLY LYS SEQRES 16 A 372 THR GLU LEU ARG HIS LEU LEU SER LYS VAL LEU GLN GLU SEQRES 17 A 372 ARG ASP ALA LEU LYS GLY THR ARG LYS PRO ALA VAL LEU SEQRES 18 A 372 VAL LYS ILE ALA PRO ASP LEU THR ALA GLN ASP LYS GLU SEQRES 19 A 372 ASP ILE ALA SER VAL ALA ARG GLU LEU GLY ILE ASP GLY SEQRES 20 A 372 LEU ILE VAL THR ASN THR THR VAL SER ARG PRO VAL GLY SEQRES 21 A 372 LEU GLN GLY ALA LEU ARG SER GLU THR GLY GLY LEU SER SEQRES 22 A 372 GLY LYS PRO LEU ARG ASP LEU SER THR GLN THR ILE ARG SEQRES 23 A 372 GLU MET TYR ALA LEU THR GLN GLY ARG ILE PRO ILE ILE SEQRES 24 A 372 GLY VAL GLY GLY VAL SER SER GLY GLN ASP ALA LEU GLU SEQRES 25 A 372 LYS ILE GLN ALA GLY ALA SER LEU VAL GLN LEU TYR THR SEQRES 26 A 372 ALA LEU ILE PHE LEU GLY PRO PRO VAL VAL VAL ARG VAL SEQRES 27 A 372 LYS ARG GLU LEU GLU ALA LEU LEU LYS GLU ARG GLY PHE SEQRES 28 A 372 THR THR VAL THR ASP ALA ILE GLY ALA ASP HIS ARG ARG SEQRES 29 A 372 LEU GLU HIS HIS HIS HIS HIS HIS HET FMN A 500 31 HET ORO A 501 11 HET 2V6 A 502 27 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM 2V6 N-[3,5-DIFLUORO-4-(TRIFLUOROMETHYL)PHENYL]-5-METHYL-2- HETNAM 2 2V6 (TRIFLUOROMETHYL)[1,2,4]TRIAZOLO[1,5-A]PYRIMIDIN-7- HETNAM 3 2V6 AMINE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 ORO C5 H4 N2 O4 FORMUL 4 2V6 C14 H7 F8 N5 FORMUL 5 HOH *111(H2 O) HELIX 1 1 HIS A 36 TYR A 41 1 6 HELIX 2 2 TYR A 41 LEU A 50 1 10 HELIX 3 3 ASP A 51 LEU A 65 1 15 HELIX 4 4 SER A 76 GLU A 80 5 5 HELIX 5 5 ALA A 104 LEU A 111 1 8 HELIX 6 6 GLY A 153 ARG A 164 1 12 HELIX 7 7 ARG A 164 ASP A 174 1 11 HELIX 8 8 ASP A 190 GLY A 203 1 14 HELIX 9 9 PRO A 204 ALA A 206 5 3 HELIX 10 10 GLY A 226 ALA A 243 1 18 HELIX 11 11 THR A 261 GLY A 276 1 16 HELIX 12 12 GLY A 295 GLU A 300 5 6 HELIX 13 13 LEU A 309 THR A 324 1 16 HELIX 14 14 SER A 338 ALA A 348 1 11 HELIX 15 15 TYR A 356 GLY A 363 1 8 HELIX 16 16 PRO A 364 ARG A 381 1 18 HELIX 17 17 THR A 385 ILE A 390 1 6 HELIX 18 18 GLY A 391 ARG A 396 1 6 SHEET 1 A 2 VAL A 81 VAL A 83 0 SHEET 2 A 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81 SHEET 1 B 9 VAL A 92 ILE A 94 0 SHEET 2 B 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94 SHEET 3 B 9 LEU A 178 LEU A 182 1 O ASN A 181 N VAL A 118 SHEET 4 B 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182 SHEET 5 B 9 ALA A 251 ILE A 256 1 O ALA A 251 N LEU A 209 SHEET 6 B 9 GLY A 279 VAL A 282 1 O ILE A 281 N VAL A 254 SHEET 7 B 9 ILE A 330 VAL A 333 1 O ILE A 331 N LEU A 280 SHEET 8 B 9 LEU A 352 LEU A 355 1 O LEU A 352 N GLY A 332 SHEET 9 B 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353 SHEET 1 C 3 VAL A 134 LEU A 137 0 SHEET 2 C 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135 SHEET 3 C 3 GLY A 303 GLY A 306 -1 O GLY A 303 N ASN A 145 CISPEP 1 GLY A 119 SER A 120 0 1.87 CISPEP 2 ARG A 131 PRO A 132 0 1.26 CISPEP 3 VAL A 282 THR A 283 0 12.75 SITE 1 AC1 25 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC1 25 SER A 120 ASN A 145 TYR A 147 ASN A 181 SITE 3 AC1 25 ASN A 212 LYS A 255 THR A 283 ASN A 284 SITE 4 AC1 25 THR A 285 SER A 305 GLY A 306 VAL A 333 SITE 5 AC1 25 GLY A 334 GLY A 335 LEU A 355 TYR A 356 SITE 6 AC1 25 THR A 357 ORO A 501 HOH A 601 HOH A 602 SITE 7 AC1 25 HOH A 710 SITE 1 AC2 11 ASN A 145 TYR A 147 GLY A 148 PHE A 149 SITE 2 AC2 11 ASN A 212 SER A 215 ASN A 217 ASN A 284 SITE 3 AC2 11 THR A 285 FMN A 500 HOH A 710 SITE 1 AC3 10 GLN A 47 PRO A 52 ALA A 55 ALA A 59 SITE 2 AC3 10 VAL A 134 ARG A 136 TYR A 356 ILE A 360 SITE 3 AC3 10 PRO A 364 HOH A 605 CRYST1 124.365 43.845 63.305 90.00 99.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008041 0.000000 0.001412 0.00000 SCALE2 0.000000 0.022808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016038 0.00000