HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-FEB-14 4OT6 TITLE CRYSTAL STRUCTURE OF BTK KINASE DOMAIN COMPLEXED WITH 4- TITLE 2 METHANESULFONYL-N-(3-{8-[4-(MORPHOLINE-4-CARBONYL)-PHENYLAMINO]- TITLE 3 IMIDAZO[1,2-A]PYRAZIN-6-YL}-PHENYL)-BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 378-659; COMPND 5 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE, ATK, B-CELL PROGENITOR COMPND 6 KINASE, BPK, BRUTON TYROSINE KINASE; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTK, AGMX1, ATK, BPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KUGLSTATTER,A.WONG REVDAT 4 20-SEP-23 4OT6 1 REMARK SEQADV REVDAT 3 17-JUL-19 4OT6 1 REMARK REVDAT 2 21-JAN-15 4OT6 1 JRNL REVDAT 1 14-MAY-14 4OT6 0 JRNL AUTH Y.LOU,X.HAN,A.KUGLSTATTER,R.K.KONDRU,Z.K.SWEENEY,M.SOTH, JRNL AUTH 2 J.MCINTOSH,R.LITMAN,J.SUH,B.KOCER,D.DAVIS,J.PARK, JRNL AUTH 3 S.FRAUCHIGER,N.DEWDNEY,H.ZECIC,J.P.TAYGERLY,K.SARMA,J.HONG, JRNL AUTH 4 R.J.HILL,T.GABRIEL,D.M.GOLDSTEIN,T.D.OWENS JRNL TITL STRUCTURE-BASED DRUG DESIGN OF RN486, A POTENT AND SELECTIVE JRNL TITL 2 BRUTON'S TYROSINE KINASE (BTK) INHIBITOR, FOR THE TREATMENT JRNL TITL 3 OF RHEUMATOID ARTHRITIS. JRNL REF J.MED.CHEM. V. 58 512 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 24712864 JRNL DOI 10.1021/JM500305P REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0048 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 17497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.04000 REMARK 3 B22 (A**2) : 5.01000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.604 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2259 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.436 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 6.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;34.134 ;24.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;14.303 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1727 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 1.806 ; 2.910 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1322 ; 2.600 ; 4.358 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 2.887 ; 3.373 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3654 ; 6.949 ;26.522 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 394 A 407 REMARK 3 RESIDUE RANGE : A 453 A 476 REMARK 3 RESIDUE RANGE : A 418 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6971 -1.9472 8.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0035 REMARK 3 T33: 0.1226 T12: -0.0119 REMARK 3 T13: 0.0241 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4694 L22: 3.0408 REMARK 3 L33: 0.2550 L12: -0.4285 REMARK 3 L13: 0.2011 L23: 0.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.0205 S13: -0.0991 REMARK 3 S21: -0.0378 S22: 0.0753 S23: 0.0620 REMARK 3 S31: 0.0581 S32: -0.0110 S33: -0.1310 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 477 A 514 REMARK 3 RESIDUE RANGE : A 559 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8407 26.9754 2.7817 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.0029 REMARK 3 T33: 0.1068 T12: 0.0074 REMARK 3 T13: 0.0002 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2757 L22: 0.4899 REMARK 3 L33: 0.8629 L12: 0.0720 REMARK 3 L13: -0.0726 L23: -0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0190 S13: 0.0493 REMARK 3 S21: -0.0086 S22: 0.0124 S23: 0.0331 REMARK 3 S31: -0.0031 S32: -0.0134 S33: -0.0081 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2071 5.2200 19.6697 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.0163 REMARK 3 T33: 0.0923 T12: -0.0134 REMARK 3 T13: 0.0426 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 6.9446 L22: 0.7361 REMARK 3 L33: 4.3060 L12: -0.2880 REMARK 3 L13: 3.3614 L23: -1.5200 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: -0.1209 S13: -0.2859 REMARK 3 S21: 0.0767 S22: 0.0807 S23: 0.0492 REMARK 3 S31: -0.0422 S32: -0.2186 S33: -0.1698 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7432 4.4482 7.1389 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.1083 REMARK 3 T33: 0.0992 T12: -0.0442 REMARK 3 T13: 0.0408 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1451 L22: 6.7110 REMARK 3 L33: 5.7358 L12: 0.0997 REMARK 3 L13: 2.5526 L23: -0.3295 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.2658 S13: -0.0911 REMARK 3 S21: -0.2097 S22: 0.2412 S23: -0.2143 REMARK 3 S31: -0.1084 S32: 0.5728 S33: -0.1830 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 515 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4856 14.8071 10.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.0032 REMARK 3 T33: 0.0926 T12: 0.0013 REMARK 3 T13: 0.0082 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.2168 L22: 0.5008 REMARK 3 L33: 2.0047 L12: 0.3056 REMARK 3 L13: 0.7650 L23: -0.5552 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0277 S13: 0.0056 REMARK 3 S21: 0.0380 S22: -0.0412 S23: -0.0134 REMARK 3 S31: 0.1319 S32: 0.0443 S33: 0.0128 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.24500 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88200 REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3PIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG3350, 0.1 M HEPES, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.91250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.69450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.91250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.69450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 377 REMARK 465 SER A 378 REMARK 465 GLN A 379 REMARK 465 GLN A 380 REMARK 465 ASN A 381 REMARK 465 LYS A 382 REMARK 465 ASN A 383 REMARK 465 ALA A 384 REMARK 465 PRO A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 465 ALA A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 GLY A 391 REMARK 465 TYR A 392 REMARK 465 GLY A 393 REMARK 465 SER A 659 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 405 -67.17 -105.63 REMARK 500 GLN A 424 -38.11 -157.47 REMARK 500 LYS A 466 48.73 -104.90 REMARK 500 ARG A 520 -9.95 75.85 REMARK 500 ASP A 521 40.93 -144.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2V1 A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OT5 RELATED DB: PDB REMARK 900 RELATED ID: 4OTQ RELATED DB: PDB REMARK 900 RELATED ID: 4OTR RELATED DB: PDB DBREF 4OT6 A 378 659 UNP Q06187 BTK_HUMAN 378 659 SEQADV 4OT6 GLY A 377 UNP Q06187 EXPRESSION TAG SEQADV 4OT6 ALA A 489 UNP Q06187 MET 489 ENGINEERED MUTATION SEQADV 4OT6 ALA A 492 UNP Q06187 ARG 492 ENGINEERED MUTATION SEQADV 4OT6 ALA A 624 UNP Q06187 GLU 624 ENGINEERED MUTATION SEQADV 4OT6 ALA A 625 UNP Q06187 LYS 625 ENGINEERED MUTATION SEQRES 1 A 283 GLY SER GLN GLN ASN LYS ASN ALA PRO SER THR ALA GLY SEQRES 2 A 283 LEU GLY TYR GLY SER TRP GLU ILE ASP PRO LYS ASP LEU SEQRES 3 A 283 THR PHE LEU LYS GLU LEU GLY THR GLY GLN PHE GLY VAL SEQRES 4 A 283 VAL LYS TYR GLY LYS TRP ARG GLY GLN TYR ASP VAL ALA SEQRES 5 A 283 ILE LYS MET ILE LYS GLU GLY SER MET SER GLU ASP GLU SEQRES 6 A 283 PHE ILE GLU GLU ALA LYS VAL MET MET ASN LEU SER HIS SEQRES 7 A 283 GLU LYS LEU VAL GLN LEU TYR GLY VAL CYS THR LYS GLN SEQRES 8 A 283 ARG PRO ILE PHE ILE ILE THR GLU TYR MET ALA ASN GLY SEQRES 9 A 283 CYS LEU LEU ASN TYR LEU ARG GLU ALA ARG HIS ALA PHE SEQRES 10 A 283 GLN THR GLN GLN LEU LEU GLU MET CYS LYS ASP VAL CYS SEQRES 11 A 283 GLU ALA MET GLU TYR LEU GLU SER LYS GLN PHE LEU HIS SEQRES 12 A 283 ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL ASN ASP GLN SEQRES 13 A 283 GLY VAL VAL LYS VAL SER ASP PHE GLY LEU SER ARG TYR SEQRES 14 A 283 VAL LEU ASP ASP GLU TYR THR SER SER VAL GLY SER LYS SEQRES 15 A 283 PHE PRO VAL ARG TRP SER PRO PRO GLU VAL LEU MET TYR SEQRES 16 A 283 SER LYS PHE SER SER LYS SER ASP ILE TRP ALA PHE GLY SEQRES 17 A 283 VAL LEU MET TRP GLU ILE TYR SER LEU GLY LYS MET PRO SEQRES 18 A 283 TYR GLU ARG PHE THR ASN SER GLU THR ALA GLU HIS ILE SEQRES 19 A 283 ALA GLN GLY LEU ARG LEU TYR ARG PRO HIS LEU ALA SER SEQRES 20 A 283 ALA ALA VAL TYR THR ILE MET TYR SER CYS TRP HIS GLU SEQRES 21 A 283 LYS ALA ASP GLU ARG PRO THR PHE LYS ILE LEU LEU SER SEQRES 22 A 283 ASN ILE LEU ASP VAL MET ASP GLU GLU SER HET 2V1 A 701 43 HETNAM 2V1 4-(METHYLSULFONYL)-N-[3-(8-{[4-(MORPHOLIN-4- HETNAM 2 2V1 YLCARBONYL)PHENYL]AMINO}IMIDAZO[1,2-A]PYRAZIN-6-YL) HETNAM 3 2V1 PHENYL]BENZAMIDE FORMUL 2 2V1 C31 H28 N6 O5 S FORMUL 3 HOH *129(H2 O) HELIX 1 1 ASP A 398 LYS A 400 5 3 HELIX 2 2 SER A 438 ASN A 451 1 14 HELIX 3 3 LEU A 482 GLU A 488 1 7 HELIX 4 4 ALA A 489 ALA A 492 5 4 HELIX 5 5 GLN A 494 LYS A 515 1 22 HELIX 6 6 ALA A 523 ARG A 525 5 3 HELIX 7 7 GLY A 541 VAL A 546 5 6 HELIX 8 8 ASP A 548 SER A 553 1 6 HELIX 9 9 PRO A 560 SER A 564 5 5 HELIX 10 10 PRO A 565 SER A 572 1 8 HELIX 11 11 SER A 575 SER A 592 1 18 HELIX 12 12 THR A 602 GLN A 612 1 11 HELIX 13 13 SER A 623 CYS A 633 1 11 HELIX 14 14 LYS A 637 ARG A 641 5 5 HELIX 15 15 THR A 643 GLU A 658 1 16 SHEET 1 A 5 LEU A 402 GLY A 411 0 SHEET 2 A 5 GLY A 414 TRP A 421 -1 O TYR A 418 N LYS A 406 SHEET 3 A 5 TYR A 425 MET A 431 -1 O ILE A 429 N LYS A 417 SHEET 4 A 5 PHE A 471 GLU A 475 -1 O THR A 474 N ALA A 428 SHEET 5 A 5 LEU A 460 CYS A 464 -1 N TYR A 461 O ILE A 473 SHEET 1 B 3 GLY A 480 CYS A 481 0 SHEET 2 B 3 CYS A 527 VAL A 529 -1 O VAL A 529 N GLY A 480 SHEET 3 B 3 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 CISPEP 1 ARG A 468 PRO A 469 0 0.12 SITE 1 AC1 12 GLU A 407 LEU A 408 THR A 410 VAL A 416 SITE 2 AC1 12 ALA A 428 GLU A 475 TYR A 476 MET A 477 SITE 3 AC1 12 ALA A 478 GLY A 480 ASN A 484 LEU A 528 CRYST1 71.825 105.389 38.240 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026151 0.00000